BAC Information

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BAC

Clone NameB6Ng01-260K19
Chromosome5 (Build37)
Map Location 68,136,989 - 68,138,240
singlet/doubletsinglet
Overlap geneAtp8a1
Upstream gene3732412D22Rik, LOC624662, Phox2b, Tmem33, Slc30a9, EG666938, C330024D21Rik, D830007B15Rik, LOC100042458
Downstream geneEG330097, EG666977, AY616753
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260K19.bB6Ng01-260K19.g
ACCGA065538GA065539
length1,227866
definitionB6Ng01-260K19.b B6Ng01-260K19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactaaactttcagattaatgaaaaaaaagtgaacgataggggag
gggtcaaaagaattccaagtatcacagaagctggactacggactacggag
gtccaaatagaatgcatgggacagagctgccaacagacaagattatctgt
tgtgactgtgctgaggttactaacttacccatgagcccatgctcaaggag
tcagaaaaagaatgtgaaacaataaaaaaagtcaaaactttatctttagg
aagtaatagaaaaatgcatttttaagataaaattttaagttaggaaagaa
atagtttaaaggaaaaaatacaccaggtacaaagatgtttagctatgaac
acaatagaagcattaataataattttcaagacgagaactcatttacatga
aagaaacatagagatcttcagtgtaaattgtatagtttgataaaggttcc
gcctcgtaaataccacccagttgaagacacagaacatctgacccacaaat
tcccgtgttccatttccaatcaattttctccctgccccagggcaatcact
gctcaacattctatctttataaatcacatctgcaaaatttccagctgcac
acagatggactcgtgcaggacgctttcctcaatgcctggcacgtcccctc
ttccacagaaaggtgctacgactcatccccaccgctccggaatcaagaag
acactcttattgtttagattgttcatcctctcctgctgatgtgcgttctt
tttggttctggtttggggaaaccatggccacagccactatgaacactccg
tggtaagtccttggcggatacaaacttcctttcctcctgagtaactgaga
actgagtgtgaattgaagcagctttccttcttcagaaaactctttaaacc
tcacaaacgtttgcttctgtggctctatcttagcttctgcactgggagca
caatcttgcctcgtaatgtgtttcatgtcttgatgactagccttgtaacc
tgtcatgtagttgcatggagctgcttggatcctcacctgctgtcatgtgc
agaccttgaataattatttcatggtttgtcattttgagaacaggtctctg
tgtagcccagctgcctcaacttgctatgtagctgagactggcttgacact
ccaaggttcctgtcctgcctccatgacatgtacactcgatctctaacaaa
ctaatggctattggaatctagagaaga
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcagattttactgaaag
gacccagatgtagctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_68136989_68138240
seq2: B6Ng01-260K19.b_49_1275

seq1  GAATTCACTAAACTTTCAGATTAATGAAAAAAAAGTGAACGATAGGGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAAACTTTCAGATTAATGAAAAAAAAGTGAACGATAGGGGAG  50

seq1  GGGTCAAAAGAATTCCAAGTATCACAGAAGCTGGACTACGGACTACGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAAAAGAATTCCAAGTATCACAGAAGCTGGACTACGGACTACGGAG  100

seq1  GTCCAAATAGAATGCATGGGACAGAGCTGCCAACAGACAAGATTATCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAATAGAATGCATGGGACAGAGCTGCCAACAGACAAGATTATCTGT  150

seq1  TGTGACTGTGCTGAGGTTACTAACTTACCCATGAGCCCATGCTCAAGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTGTGCTGAGGTTACTAACTTACCCATGAGCCCATGCTCAAGGAG  200

seq1  TCAGAAAAAGAATGTGAAACAATAAAAAAAGTCAAAACTTTATCTTTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAAAGAATGTGAAACAATAAAAAAAGTCAAAACTTTATCTTTAGG  250

seq1  AAGTAATAGAAAAATGCATTTTTAAGATAAAATTTTAAGTTAGGAAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATAGAAAAATGCATTTTTAAGATAAAATTTTAAGTTAGGAAAGAA  300

seq1  ATAGTTTAAAGGAAAAAATACACCAGGTACAAAGATGTTTAGCTATGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTAAAGGAAAAAATACACCAGGTACAAAGATGTTTAGCTATGAAC  350

seq1  ACAATAGAAGCATTAATAATAATTTTCAAGACGAGAACTCATTTACATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAGAAGCATTAATAATAATTTTCAAGACGAGAACTCATTTACATGA  400

seq1  AAGAAACATAGAGATCTTCAGTGTAAATTGTATAGTTTGATAAAGGTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACATAGAGATCTTCAGTGTAAATTGTATAGTTTGATAAAGGTTCC  450

seq1  GCCTCGTAAATACCACCCAGTTGAAGACACAGAACATCTGACCCACAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGTAAATACCACCCAGTTGAAGACACAGAACATCTGACCCACAAAT  500

seq1  TCCCGTGTTCCATTTCCAATCAATTTTCTCCCTGCCCCAGGGCAATCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGTGTTCCATTTCCAATCAATTTTCTCCCTGCCCCAGGGCAATCACT  550

seq1  GCTCAACATTCTATCTTTATAAATCACATCTGCAAAATTTCCAGCTGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAACATTCTATCTTTATAAATCACATCTGCAAAATTTCCAGCTGCAC  600

seq1  ACAGATGGACTCGTGCAGGACGCTTTCCTCAATGCCTGGCACGTCCCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGGACTCGTGCAGGACGCTTTCCTCAATGCCTGGCACGTCCCCTC  650

seq1  TTCCACAGAAAGGTGCTACGACTCATCCCCACCGCTCCGGAATCAAGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAGAAAGGTGCTACGACTCATCCCCACCGCTCCGGAATCAAGAAG  700

seq1  ACACTCTTATTGTTTAGATTGTTCATCCTCTCCTGCTGATGTGCGTTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTTATTGTTTAGATTGTTCATCCTCTCCTGCTGATGTGCGTTCTT  750

seq1  TTTGGTTCTGGTTTGGGGAAACCATGGCCACAGCCACTATGAACACTCCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTCTGGTTTGGGGAAACCATGGCCACAGCCACTATGAACACTCCG  800

seq1  TGGTAAGTCCTTGGCGGATACAAACTTCCTTTCCTCCTGAGTAACTGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGTCCTTGGCGGATACAAACTTCCTTTCCTCCTGAGTAACTGAGA  850

seq1  ACTGAGTGTGAATTGAAGCAGGCTTTCCTTCTTCAGAAAACTCTTTAAAA  900
      |||||||||||||||||||| ||||||||||||||||||||||||| |||
seq2  ACTGAGTGTGAATTGAAGCA-GCTTTCCTTCTTCAGAAAACTCTTT-AAA  898

seq1  CCTCACAAACGTTTGCTTCTGTGGCTCTATCTTAGCTTCTGCACTGGGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACAAACGTTTGCTTCTGTGGCTCTATCTTAGCTTCTGCACTGGGAG  948

seq1  CACAATCTTGCCTCGTTATGTGTTTCATGTTCTTGATGACTAGCCTTGTA  1000
      |||||||||||||||| |||||||||||| ||||||||||||||||||||
seq2  CACAATCTTGCCTCGTAATGTGTTTCATG-TCTTGATGACTAGCCTTGTA  997

seq1  ACCTGTCATGTAGTTGGCCATGGAGCTGCTTGGAT-CTCACCTGCTGTCA  1049
      ||||||||||||||||  ||||||||||||||||| ||||||||||||||
seq2  ACCTGTCATGTAGTTG--CATGGAGCTGCTTGGATCCTCACCTGCTGTCA  1045

seq1  TGTGCAGACCCTGAATAATTATTTCATTGTTTGTCATTTTGAGACAGGGT  1099
      |||||||||| |||||||||||||||| ||||||||||||||||   |||
seq2  TGTGCAGACCTTGAATAATTATTTCATGGTTTGTCATTTTGAGAACAGGT  1095

seq1  CTC-GTGTAGCCCAGGCTGGCTTCAAACTTGCTATGTAGCTGAAGCTGGC  1148
      ||| |||||||||| |||| ||   ||||||||||||||||||  |||||
seq2  CTCTGTGTAGCCCA-GCTGCCT--CAACTTGCTATGTAGCTGAGACTGGC  1142

seq1  TGCACA-TCCCAGGTTCTCCTGCTTCCTGCCTCCCATGCACTGTACCCAC  1197
      |  ||| ||| ||||  |||||  |||||||| |||||   |||||    
seq2  TTGACACTCCAAGGT--TCCTG--TCCTGCCT-CCATGACATGTAC----  1183

seq1  CCTTCTGGATACTTACATAACCAAACATTTAAT-GCTATTTGGAATCTAG  1246
          || ||| ||    ||| |||||   |||| |||| |||||||||||
seq2  ---ACTCGAT-CT---CTAA-CAAAC---TAATGGCTA-TTGGAATCTAG  1221

seq1  AGAAGA  1252
      ||||||
seq2  AGAAGA  1227