BAC Information

Click to search

BAC

Clone NameB6Ng01-262L09
Chromosome5 (Build37)
Map Location 62,244,620 - 62,363,763
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666597, EG666610, LOC100041524, G6pd2
Downstream geneLOC100041543, Centd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262L09.bB6Ng01-262L09.g
ACCGA067054GA067055
length1,1711,113
definitionB6Ng01-262L09.b B6Ng01-262L09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,244,620 - 62,245,788)(62,362,640 - 62,363,763)
sequence
gaattctccagtatgccttttcactttggactcacagttactagtgtatg
tgcattaggaaatacagatcagatatgttctctttaattcatccaagtca
gtggttctccaaaatggctacaaaatcacaacacacaaatagctttttaa
aagtatgtgtgcttgtgttaatttaattggcttggtagtacttagctata
aatatcttttaaaattgttgaagtgaatctaataggcactcagtgttgaa
aacagttagcatcagcttgtcccatgggtttaatacagtctagtggttca
aactgatcacagactgagaacaaacatctatcccaatttccaaatcatac
acagaattgcccgtgaggtttcgctgaaggaatacaaaatactcagatca
aaattgggctcatgtctcctctataatttctcttctctgtatgttcattc
tttgaatttagaaatgtcatttatcccatttctgagggcatccaagtgac
tctagctctctcacaatgtttagttatctcaaaattacagagtaaaccat
ttaaaaatatagcctaaatccaataaattctcatttcctagactactact
taactcatcaagcgcctacattacagaagctttgtctccatactcatgca
ttttactctagttcctaatagcgtatatatgtaattttcaacaaatgaac
acaatatatgaaattaaatcttcccattgtgtctatacgtttcaaattta
gaataaacacaaatttaaaacatttaacaaacagcaagttccattaatga
aaagctcaattttatacttaccaggcatctcaatctccatccatgaatgt
gaattaatacacgtacaaggatttaaagttatctttaaacatgacagaca
aagagataattcatcttaagaacttattagcttatgttctttaaaataat
atttttccttgtatattatgttctagaaaggcaatacagaaataatatta
tgtataatatctgcattatctcaggtgacctcatctatatttatataaat
caaacattctctgatatacaccacatacagaatcatgtcatatgttcata
tttcatattatatggaagatattttctaaacatagttataggcatgcagt
tactcaaatattaaactgaaa

gaattctcaccacagttttggataaattcaccttatttgctggaaaagaa
caataaaacttgtttgataactgttcagtaataagtaaggaaaaactaat
aattatattataatgtctcccatttacaaatggacttcatttatctttag
aaaacaattatacgaagcttatgaatacttagtgcttctgagaagaatgc
tgtgacctcaactagcaattacttttctttctatgctccataaaattgaa
gagatttacagagcaagtgaaaatactaacttttataatgacaggccata
tggcactctgtttactatatttatgcttagcagagagtttaaaattatac
atcttgcttttttttttcagtaaaatgaggttgccacttctatgatgctt
gcaaattaccaaggctagaaaaacaaagcaaaaaaattctatattaattt
caaaaatagaatctatcacaattgccattttccctcaggtgttttggctt
ccagaataagtctttatatgttttaaaacatgaaatactgatattttagg
gctataaaaacaagtttgatgttgaaatccataagactgtgagtttggct
taagaattatttctctcttattacaaacatgttgctgaaaaatacatgaa
gcattggcacaactgctaagcaattggtatcatggttggagtttttaaag
gagtctttcagtctttctcttggtcttgggatcctgcatcctaagatgtt
cactggatagtggacatgtcagaactgtgacatttataccaaaacctgca
ggaatggaaggagttttcccaatacacaggtcatgtttgttgtagatggc
agacatggagaactagagcggctaaaggttttgttaatatttaaagggaa
gcccaaaattcccacttcatcatatgttacatttgcagaaaaccaagttt
tatttcccaatgggtaaatgtaatgactgtaatagttttcataggagcat
gtgttagccaatttatcttctagatactatagaaggcctataatatacct
cataatataaaagattcatcagcctatatattagttactatttgtgatta
tacaagatctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_62244620_62245788
seq2: B6Ng01-262L09.b_48_1218

seq1  GAATTCTCCAGTATGCCTTTTCACTTTGGACTCACAGTTACTAGTGTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAGTATGCCTTTTCACTTTGGACTCACAGTTACTAGTGTATG  50

seq1  TGCATTAGGAAATACAGATCAGATATGTTCTCTTTAATTCATCCAAGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTAGGAAATACAGATCAGATATGTTCTCTTTAATTCATCCAAGTCA  100

seq1  GTGGTTCTCCAAAATGGCTACAAAATCACAACACACAAATAGCTTTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTCTCCAAAATGGCTACAAAATCACAACACACAAATAGCTTTTTAA  150

seq1  AAGTATGTGTGCTTGTGTTAATTTAATTGGCTTGGTAGTACTTAGCTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGTGTGCTTGTGTTAATTTAATTGGCTTGGTAGTACTTAGCTATA  200

seq1  AATATCTTTTAAAATTGTTGAAGTGAATCTAATAGGCACTCAGTGTTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTTTTAAAATTGTTGAAGTGAATCTAATAGGCACTCAGTGTTGAA  250

seq1  AACAGTTAGCATCAGCTTGTCCCATGGGTTTAATACAGTCTAGTGGTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTAGCATCAGCTTGTCCCATGGGTTTAATACAGTCTAGTGGTTCA  300

seq1  AACTGATCACAGACTGAGAACAAACATCTATCCCAATTTCCAAATCATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATCACAGACTGAGAACAAACATCTATCCCAATTTCCAAATCATAC  350

seq1  ACAGAATTGCCCGTGAGGTTTCGCTGAAGGAATACAAAATACTCAGATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATTGCCCGTGAGGTTTCGCTGAAGGAATACAAAATACTCAGATCA  400

seq1  AAATTGGGCTCATGTCTCCTCTATAATTTCTCTTCTCTGTATGTTCATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGGCTCATGTCTCCTCTATAATTTCTCTTCTCTGTATGTTCATTC  450

seq1  TTTGAATTTAGAAATGTCATTTATCCCATTTCTGAGGGCATCCAAGTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATTTAGAAATGTCATTTATCCCATTTCTGAGGGCATCCAAGTGAC  500

seq1  TCTAGCTCTCTCACAATGTTTAGTTATCTCAAAATTACAGAGTAAACCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTCTCTCACAATGTTTAGTTATCTCAAAATTACAGAGTAAACCAT  550

seq1  TTAAAAATATAGCCTAAATCCAATAAATTCTCATTTCCTAGACTACTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATATAGCCTAAATCCAATAAATTCTCATTTCCTAGACTACTACT  600

seq1  TAACTCATCAAGCGCCTACATTACAGAAGCTTTGTCTCCATACTCATGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCATCAAGCGCCTACATTACAGAAGCTTTGTCTCCATACTCATGCA  650

seq1  TTTTACTCTAGTTCCTAATAGCGTATATATGTAATTTTCAACAAATGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTCTAGTTCCTAATAGCGTATATATGTAATTTTCAACAAATGAAC  700

seq1  ACAATATATGAAATTAAATCTTCCCATTGTGTCTATACGTTTCAAATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATATGAAATTAAATCTTCCCATTGTGTCTATACGTTTCAAATTTA  750

seq1  GAATAAACACAAATTTAAAACATTTAACAAACAGCAAGTTCCATTAATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAACACAAATTTAAAACATTTAACAAACAGCAAGTTCCATTAATGA  800

seq1  AAAGCTCAATTTTATACTTACCAGGCATCTCAATCTCCATCCATGAATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCAATTTTATACTTACCAGGCATCTCAATCTCCATCCATGAATGT  850

seq1  GAATTAATACACGTACAAGGATTTAAAGTTATCTTTAAACATGACAGACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAATACACGTACAAGGATTTAAAGTTATCTTTAAACATGACAGACA  900

seq1  AAGAGATAATTCATCTTAAGAACTTATTAGCTTATGTTCTTTAAAATAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATAATTCATCTTAAGAACTTATTAGCTTATGTTCTTTAAAATAAT  950

seq1  ATTTTTCCTTGTATATTATGTTCTAGAAAGGCAATACAGAAATAATATAA  1000
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATTTTTCCTTGTATATTATGTTCTAGAAAGGCAATACAGAAATAATATTA  1000

seq1  TGTATAATATCTGCATTATCTCAGGTGACCTCATCTATATTTATATAAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAATATCTGCATTATCTCAGGTGACCTCATCTATATTTATATAAAT  1050

seq1  CAAACA-TCTCTGAATATACA-CACATACAGAAATTCATGTCATATG-TC  1097
      |||||| |||||| ||||||| |||||||||||  |||||||||||| ||
seq2  CAAACATTCTCTG-ATATACACCACATACAGAA--TCATGTCATATGTTC  1097

seq1  ATATTTCATA-TATATG--AGATA--TTCTAAACATAGTTTAATAGCAAT  1142
      |||||||||| ||||||  |||||  ||||||||||||||  ||||  ||
seq2  ATATTTCATATTATATGGAAGATATTTTCTAAACATAGTT--ATAGGCAT  1145

seq1  GCAGTAACTCAATATTTAAAACTGAAA  1169
      ||||| |||||| || | |||||||||
seq2  GCAGTTACTCAA-ATATTAAACTGAAA  1171


seq1: chr5_62362640_62363763
seq2: B6Ng01-262L09.g_65_1177 (reverse)

seq1  AAAAGATCTTGTATAATCACAAAATTAGTAACCTATATAATATAGGCTGA  50
      |||||||||||||||||||||||  |||||||   ||  |||||||||||
seq2  AAAAGATCTTGTATAATCACAAA--TAGTAAC---TAATATATAGGCTGA  45

seq1  TTTGTATCCCTTTATATTATGA-GTATATTATTAGGCCTTTCTATAGTAT  99
        || || | |||||||||||| |||||||| |||||| |||||||||||
seq2  --TGAAT-CTTTTATATTATGAGGTATATTA-TAGGCC-TTCTATAGTAT  90

seq1  CTAGAAGATTAAAATTTGGCTAACACATGCTCCTATGAAAACTATTACAG  149
      |||||||||   || |||||||||||||||||||||||||||||||||||
seq2  CTAGAAGAT---AAATTGGCTAACACATGCTCCTATGAAAACTATTACAG  137

seq1  TCATTTACATTTACCCATTGGGAAATAAAACTTGGTTTTCTGCAAATGTA  199
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCA-TTACATTTACCCATTGGGAAATAAAACTTGGTTTTCTGCAAATGTA  186

seq1  ACATATGATGAAGTGGGAATTTT-GGCTTTCCCTTAAATATTAACAAAAC  248
      ||||||||||||||||||||||| ||||| || |||||||||||||||||
seq2  ACATATGATGAAGTGGGAATTTTGGGCTTCCCTTTAAATATTAACAAAAC  236

seq1  C-TTAGCCGCTCTAGTTCTCCATGTCTGCCATCTACAACAAACATGACCT  297
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCCGCTCTAGTTCTCCATGTCTGCCATCTACAACAAACATGACCT  286

seq1  GTGTATTGGGAAAACTCCTTCCATTCCTGCAGGTTTTGGTATAAATGTCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTGGGAAAACTCCTTCCATTCCTGCAGGTTTTGGTATAAATGTCA  336

seq1  CAGTTCTGACATGTCCACTATCCAGTGAACATCTTAGGATGCAGGATCCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTGACATGTCCACTATCCAGTGAACATCTTAGGATGCAGGATCCC  386

seq1  AAGACCAAGAGAAAGACTGAAAGACTCCTTTAAAAACTCCAACCATGATA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCAAGAGAAAGACTGAAAGACTCCTTTAAAAACTCCAACCATGATA  436

seq1  CCAATTGCTTAGCAGTTGTGCCAATGCTTCATGTATTTTTCAGCAACATG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTGCTTAGCAGTTGTGCCAATGCTTCATGTATTTTTCAGCAACATG  486

seq1  TTTGTAATAAGAGAGAAATAATTCTTAAGCCAAACTCACAGTCTTATGGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAATAAGAGAGAAATAATTCTTAAGCCAAACTCACAGTCTTATGGA  536

seq1  TTTCAACATCAAACTTGTTTTTATAGCCCTAAAATATCAGTATTTCATGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACATCAAACTTGTTTTTATAGCCCTAAAATATCAGTATTTCATGT  586

seq1  TTTAAAACATATAAAGACTTATTCTGGAAGCCAAAACACCTGAGGGAAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACATATAAAGACTTATTCTGGAAGCCAAAACACCTGAGGGAAAA  636

seq1  TGGCAATTGTGATAGATTCTATTTTTGAAATTAATATAGAATTTTTTTGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAATTGTGATAGATTCTATTTTTGAAATTAATATAGAATTTTTTTGC  686

seq1  TTTGTTTTTCTAGCCTTGGTAATTTGCAAGCATCATAGAAGTGGCAACCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTCTAGCCTTGGTAATTTGCAAGCATCATAGAAGTGGCAACCT  736

seq1  CATTTTACTGAAAAAAAAAAGCAAGATGTATAATTTTAAACTCTCTGCTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTACTGAAAAAAAAAAGCAAGATGTATAATTTTAAACTCTCTGCTA  786

seq1  AGCATAAATATAGTAAACAGAGTGCCATATGGCCTGTCATTATAAAAGTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAAATATAGTAAACAGAGTGCCATATGGCCTGTCATTATAAAAGTT  836

seq1  AGTATTTTCACTTGCTCTGTAAATCTCTTCAATTTTATGGAGCATAGAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTTCACTTGCTCTGTAAATCTCTTCAATTTTATGGAGCATAGAAA  886

seq1  GAAAAGTAATTGCTAGTTGAGGTCACAGCATTCTTCTCAGAAGCACTAAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTAATTGCTAGTTGAGGTCACAGCATTCTTCTCAGAAGCACTAAG  936

seq1  TATTCATAAGCTTCGTATAATTGTTTTCTAAAGATAAATGAAGTCCATTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATAAGCTTCGTATAATTGTTTTCTAAAGATAAATGAAGTCCATTT  986

seq1  GTAAATGGGAGACATTATAATATAATTATTAGTTTTTCCTTACTTATTAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGGGAGACATTATAATATAATTATTAGTTTTTCCTTACTTATTAC  1036

seq1  TGAACAGTTATCAAACAAGTTTTATTGTTCTTTTCCAGCAAATAAGGTGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGTTATCAAACAAGTTTTATTGTTCTTTTCCAGCAAATAAGGTGA  1086

seq1  ATTTATCCAAAACTGTGGTGAGAATTC  1124
      |||||||||||||||||||||||||||
seq2  ATTTATCCAAAACTGTGGTGAGAATTC  1113


| Home | SequenceCutter | Blast | Download |