BAC Information

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BAC

Clone NameB6Ng01-263A10
Chromosome5 (Build37)
Map Location 49,366,172 - 49,478,816
singlet/doubletdoublet
Overlap geneLOC100041668
Upstream geneLOC100040876, Slit2, 4933428G09Rik, Kcnip4
Downstream geneLOC100041659, EG433885, LOC666223, Gpr125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263A10.bB6Ng01-263A10.g
ACCGA067296GA067297
length1,1061,092
definitionB6Ng01-263A10.b B6Ng01-263A10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,366,172 - 49,367,289)(49,477,725 - 49,478,816)
sequence
gaattcaagaatgtccctcaggtgccgtgtggctcactgtgtttgttctt
atttggaacggaattactatgatgatttcttacatgttgacgtattacta
agtatttaagaacacactgaaattaatgttcttaaattttaaagaaatta
atgttcttaaattttaatatctaagcattttaaagtagcttagacaaact
ttgacaaatgacatatgtatgttcttactcatcatttataagtgattcaa
gacatccagaattttctattgttgaatgttttactttgcttttagattca
agtgcagtgtgctaaggaagtctcaggtcttgccattatcctgcctgaaa
ccccaagtagctgggattgcgtacatacactttgaggtctgacaagatcc
accatttcttaagacctaatttgttttctttccatgttaaaatttaggta
tatggtagctggactgtgaataacttgagctaccatgatgactaccaccc
tgaatcaaagtaacaccaggtttttgatctttcatctgaactgatggaca
gctcctccaattctctatcccctttcctttgaggctgccttacacacaca
cacattctgtcataagaacatgtatttttagtaaagatcaaaatgtttag
actgtcaaaatgcactgaaaattctcaaggcacttgcacctgtaacaaac
tttaaacaagacatatctgacttttctttctaggagaagctctttctagg
caaagcgtttctctatgaaaaatgcatgcatttgcaaatttttcttttta
cactacttcctcgtgtggtttaaagaaattatcattaaaatagtaacaca
tgcgatgtttctgtattactactcaccttaattttatatcccatctagaa
agtttatactgggtgatgtgtgtatgtgtagacatttagaaagggattat
ttagcatttcaactgcacagttcctattgtatttccatgttgtcaccctc
tctcactatctacaaatgccctttgtccctggactggcattcacacatct
taatatctacaaatgataacagttctaatcagacccgattactacaaaag
catctt

gaattcattattatttgcagcagcatgtgccagactatctggcctaagag
ttctcaaggttcttatgtccccctctctcatattgtcttaggaacactgg
aattagatgcttctggtggtacgatgtctggctttccaaggattttagag
acccaaattaaatacctatatttttgagacaaatgctttacctactggga
ccactctctatatagatccacattttaaacaaataccttaaaatattttg
agacgttcagaatcagattaaggcttaaaactatgtatttgaattaccag
taactgttacatagtctttaacaatcaaaagctgtagattgaagtctgtt
cttgagtctttacacctcgttgaaccaagttcttctagaacataattagt
gataaccatagataataatatacctaatacacgataatcatagataaatt
attattatagataataaattgataatgtgatggaaagtaactaaggaact
aaacacttcactgtgataaaattcatgatgttactgaataagttcctaaa
accaaaatataggtcacttaaaccctaaactaggtcttttcctatgccta
gcacaatagaaggtgataagatttacaagtcaaggaaattcatgctgtct
tcttaggagctacagcctcagaaagtatattggaaatattgaaaccaaaa
agaccatattgttaagcaacttttagttcttatagttgcagttcttatag
tttacttctaaatatttttattttttatcttttttatttagatttttttc
tttatttacatttcaaatgttatcccttttcctggtttcccctctaaacc
cccgcccccatcccatctcccctccacttgctcaccaacctacccactcc
cgctttcctgtcctggcattcccctatactagagcaatgagctttcacag
aaccaaagggcctctcctcctcattgatgtccacaggctgtctttttgct
acatatgcaggtggagccgtgatccctccatgtgtactcatggtgtgatt
taagtctctggaaactcctgatggtactggttggtttatatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_49366172_49367289
seq2: B6Ng01-263A10.b_48_1153

seq1  GAATTCAAGAATGTCCCTCAGGTGCCGTGTGGCTCACTGTGTTTGTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAATGTCCCTCAGGTGCCGTGTGGCTCACTGTGTTTGTTCTT  50

seq1  ATTTGGAACGGAATTACTATGATGATTTCTTACATGTTGACGTATTACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAACGGAATTACTATGATGATTTCTTACATGTTGACGTATTACTA  100

seq1  AGTATTTAAGAACACACTGAAATTAATGTTCTTAAATTTTAAAGAAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTAAGAACACACTGAAATTAATGTTCTTAAATTTTAAAGAAATTA  150

seq1  ATGTTCTTAAATTTTAATATCTAAGCATTTTAAAGTAGCTTAGACAAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTTAAATTTTAATATCTAAGCATTTTAAAGTAGCTTAGACAAACT  200

seq1  TTGACAAATGACATATGTATGTTCTTACTCATCATTTATAAGTGATTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAAATGACATATGTATGTTCTTACTCATCATTTATAAGTGATTCAA  250

seq1  GACATCCAGAATTTTCTATTGTTGAATGTTTTACTTTGCTTTTAGATTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCCAGAATTTTCTATTGTTGAATGTTTTACTTTGCTTTTAGATTCA  300

seq1  AGTGCAGTGTGCTAAGGAAGTCTCAGGTCTTGCCATTATCCTGCCTGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAGTGTGCTAAGGAAGTCTCAGGTCTTGCCATTATCCTGCCTGAAA  350

seq1  CCCCAAGTAGCTGGGATTGCGTACATACACTTTGAGGTCTGACAAGATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAGTAGCTGGGATTGCGTACATACACTTTGAGGTCTGACAAGATCC  400

seq1  ACCATTTCTTAAGACCTAATTTGTTTTCTTTCCATGTTAAAATTTAGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTCTTAAGACCTAATTTGTTTTCTTTCCATGTTAAAATTTAGGTA  450

seq1  TATGGTAGCTGGACTGTGAATAACTTGAGCTACCATGATGACTACCACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTAGCTGGACTGTGAATAACTTGAGCTACCATGATGACTACCACCC  500

seq1  TGAATCAAAGTAACACCAGGTTTTTGATCTTTCATCTGAACTGATGGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCAAAGTAACACCAGGTTTTTGATCTTTCATCTGAACTGATGGACA  550

seq1  GCTCCTCCAATTCTCTATCCCCTTTCCTTTGAGGCTGCCTTACACACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTCCAATTCTCTATCCCCTTTCCTTTGAGGCTGCCTTACACACACA  600

seq1  CACATTCTGTCATAAGAACATGTATTTTTAGTAAAGATCAAAATGTTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCTGTCATAAGAACATGTATTTTTAGTAAAGATCAAAATGTTTAG  650

seq1  ACTGTCAAAATGCACTGAAAATTCTCAAGGCACTTGCACCTGTAACAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCAAAATGCACTGAAAATTCTCAAGGCACTTGCACCTGTAACAAAC  700

seq1  TTTAAACAAGACATATCTGACTTTTCTTTCTAGGAGAAGCTCTTTCTAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACAAGACATATCTGACTTTTCTTTCTAGGAGAAGCTCTTTCTAGG  750

seq1  CAAAGCGTTTCTCTATGAAAAATGCATGCATTTGCAAATTTTTCTTTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCGTTTCTCTATGAAAAATGCATGCATTTGCAAATTTTTCTTTTTA  800

seq1  CACTACTTCCTCGTGTGGTTTAAAGAAATTATCATTAAAATAGTAACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACTTCCTCGTGTGGTTTAAAGAAATTATCATTAAAATAGTAACACA  850

seq1  TGCGATGTTTCTGTATTACTACTCACCTTAATTTTATATCCCATCTAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGATGTTTCTGTATTACTACTCACCTTAATTTTATATCCCATCTAGAA  900

seq1  AGTTTATACTGGGTGATGTGTGTATGTGTAGACATTTAGAAA-GGATTAT  949
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGTTTATACTGGGTGATGTGTGTATGTGTAGACATTTAGAAAGGGATTAT  950

seq1  TTAGCATTTCAACTGCACAGTTCCTATTGTATTTCCATGTTGTCACCCTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATTTCAACTGCACAGTTCCTATTGTATTTCCATGTTGTCACCCTC  1000

seq1  CTTCTCACTATCTACAAATGCCCTTTGTTCCCTGGAACTGGGCATTCACC  1049
        ||||||||||||||||||||||||| ||||||| ||| |||||||| |
seq2  --TCTCACTATCTACAAATGCCCTTTG-TCCCTGG-ACT-GGCATTCA-C  1044

seq1  ACATCTTAATATCTACAAAATTGAATAACCAGTTTCTAATCAGACCCGAT  1099
      |||||||||||||||||||  || |||| ||| |||||||||||||||| 
seq2  ACATCTTAATATCTACAAA--TG-ATAA-CAG-TTCTAATCAGACCCGA-  1088

seq1  TTACTACAAAAGCCATCTT  1118
      |||||||||||| ||||||
seq2  TTACTACAAAAG-CATCTT  1106


seq1: chr5_49477725_49478816
seq2: B6Ng01-263A10.g_67_1158 (reverse)

seq1  CATATAAACCAACCAGTACCATCA-GAGTTTCCAGAGAC-TAAATCACCA  48
      |||||||||||||||||||||||| |||||||||||||| ||||||||  
seq2  CATATAAACCAACCAGTACCATCAGGAGTTTCCAGAGACTTAAATCAC--  48

seq1  ACCAATGAGTACACATGGAGGGATCCACGGCTCCACCTGCATATGTAGC-  97
      ||| |||||||||||||||||||| |||||||||||||||||||||||| 
seq2  ACC-ATGAGTACACATGGAGGGAT-CACGGCTCCACCTGCATATGTAGCA  96

seq1  AAAAGACAGCCTTGTTGGACATCAATGA-GAGGAGAGGCCC-TTGGTTCT  145
      ||||||||||||   ||||||||||||| |||||||||||| ||||||||
seq2  AAAAGACAGCCT--GTGGACATCAATGAGGAGGAGAGGCCCTTTGGTTCT  144

seq1  GTGAAAGCTCATTGCTCTAGTATAGGGGAATGCCAGGACAGGAAAGCGGG  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGCTCATTGCTCTAGTATAGGGGAATGCCAGGACAGGAAAGCGGG  194

seq1  AGTGGGTAGGTTGGTGAGCAAGTGGAGGGGAGATGGGATGGGGGCGGGGG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTAGGTTGGTGAGCAAGTGGAGGGGAGATGGGATGGGGGCGGGGG  244

seq1  TTTAGAGGGGAAACCAGG-AAAGGGATAACATTTGAAATGTAAATAAAGA  294
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTTAGAGGGGAAACCAGGAAAAGGGATAACATTTGAAATGTAAATAAAGA  294

seq1  AAAAAATCTAAATAAAAAAGATAAAAAATAAAAATATTTAGAAGTAAACT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCTAAATAAAAAAGATAAAAAATAAAAATATTTAGAAGTAAACT  344

seq1  ATAAGAACTGCAACTATAAGAACTAAAAGTTGCTTAACAATATGGTCTTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAACTGCAACTATAAGAACTAAAAGTTGCTTAACAATATGGTCTTT  394

seq1  TTGGTTTCAATATTTCCAATATACTTTCTGAGGCTGTAGCTCCTAAGAAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTCAATATTTCCAATATACTTTCTGAGGCTGTAGCTCCTAAGAAG  444

seq1  ACAGCATGAATTTCCTTGACTTGTAAATCTTATCACCTTCTATTGTGCTA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATGAATTTCCTTGACTTGTAAATCTTATCACCTTCTATTGTGCTA  494

seq1  GGCATAGGAAAAGACCTAGTTTAGGGTTTAAGTGACCTATATTTTGGTTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAGGAAAAGACCTAGTTTAGGGTTTAAGTGACCTATATTTTGGTTT  544

seq1  TAGGAACTTATTCAGTAACATCATGAATTTTATCACAGTGAAGTGTTTAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAACTTATTCAGTAACATCATGAATTTTATCACAGTGAAGTGTTTAG  594

seq1  TTCCTTAGTTACTTTCCATCACATTATCAATTTATTATCTATAATAATAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAGTTACTTTCCATCACATTATCAATTTATTATCTATAATAATAA  644

seq1  TTTATCTATGATTATCGTGTATTAGGTATATTATTATCTATGGTTATCAC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTATGATTATCGTGTATTAGGTATATTATTATCTATGGTTATCAC  694

seq1  TAATTATGTTCTAGAAGAACTTGGTTCAACGAGGTGTAAAGACTCAAGAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATGTTCTAGAAGAACTTGGTTCAACGAGGTGTAAAGACTCAAGAA  744

seq1  CAGACTTCAATCTACAGCTTTTGATTGTTAAAGACTATGTAACAGTTACT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTCAATCTACAGCTTTTGATTGTTAAAGACTATGTAACAGTTACT  794

seq1  GGTAATTCAAATACATAGTTTTAAGCCTTAATCTGATTCTGAACGTCTCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATTCAAATACATAGTTTTAAGCCTTAATCTGATTCTGAACGTCTCA  844

seq1  AAATATTTTAAGGTATTTGTTTAAAATGTGGATCTATATAGAGAGTGGTC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTTAAGGTATTTGTTTAAAATGTGGATCTATATAGAGAGTGGTC  894

seq1  CCAGTAGGTAAAGCATTTGTCTCAAAAATATAGGTATTTAATTTGGGTCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAGGTAAAGCATTTGTCTCAAAAATATAGGTATTTAATTTGGGTCT  944

seq1  CTAAAATCCTTGGAAAGCCAGACATCGTACCACCAGAAGCATCTAATTCC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATCCTTGGAAAGCCAGACATCGTACCACCAGAAGCATCTAATTCC  994

seq1  AGTGTTCCTAAGACAATATGAGAGAGGGGGACATAAGAACCTTGAGAACT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCCTAAGACAATATGAGAGAGGGGGACATAAGAACCTTGAGAACT  1044

seq1  CTTAGGCCAGATAGTCTGGCACATGCTGCTGCAAATAATAATGAATTC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGCCAGATAGTCTGGCACATGCTGCTGCAAATAATAATGAATTC  1092


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