BAC Information

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BAC

Clone NameB6Ng01-265O10
Chromosome10 (Build37)5 (Build37)
Map Location 79,302,272 - 79,302,58066,019,954 - 66,021,133
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneOlfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57, 2610008E11Rik, EG624765, AJ543404, LOC100041709, EG624845, EG625029, Ppap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik
Downstream genePtbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18, Grin3b, ORF61, Cnn2, Abca7, Hmha1, Polr2e, Gpx4, Sbno2, Stk11, Dos, Atp5d, Midn, Cirbp, 1600002K03Rik, Efna2, Mum1, Ndufs7, Gamt, Dazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a, Onecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265O10.bB6Ng01-265O10.g
ACCGA069431GA069432
length5921,157
definitionB6Ng01-265O10.b B6Ng01-265O10.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(79,302,272 - 79,302,580)(66,019,954 - 66,021,133)
sequence
actttgtagaccaggcttgcctcagactcagagatctgcttgccaatctg
cctccccagctccttacaccatcttaaagatcattatttttccttctctt
atgccatttattaaaaagccctttttcctccattgttttatcctgttgtt
gaaaattagtttctggggctggagagatggctcagcagttaagagcactg
actgctcttccagaggtcctgagttcaaatcccagcaaccacatggtggc
tcacaaccatctttgatggaataatctgatgccttcttctggtgtgtctg
aagacagctacagtatacgcatatatttcaaataaataaatacaccttta
aaaaaagaattcgtttctattgaagagaattaattcatttccattgattt
ctatgtttttgcatcataccacactgtcttaattattgttgctttgtaat
attttttttcttttttcaagacagggtttctctgtatagccccctggcta
tcctggaaactcactctgtagaccaggctggcctcaaattcagaaatccc
acctgcctctgcctccctagtgctgggattaaaggcatgtgc
gaattcattttatttcccagtgagcaaacaaaaattccctatatattttt
taatttgataaggaaaaggtattacttaagtttagattgcattacttcgc
ttagaacaacaaatagttaaacattttttttctaagtcaagtgataatag
taagccttctatacaaagcacttcagtacacagttaagatatgctaaata
agaaattttcattactgccaacccaattctaatcattttgttgctataaa
acttctgttgccttactgaacttaaaaatgttgggtttcatttacttttt
gcatatctcttcaatttatcaaagcattaagcataatgaactataactat
gtatctcttcaagtagattttttagaggaaataattaatgttatctttaa
ataacacaatggtaccaagtatctaacagtactcaatgactactaaatgc
atgaaaaaaagattttgtgtcctctcacataaatttaagtagaaatcacg
atttaccactgctggtgctctggatgtcaagtatttgaaaataaacaagg
gacttgacaatttcttcatgtaagaaacaaaaaggagccgggcgtggtgg
cgcacacctttaatcccagcactcaggaggcagaggaggcgaatttctct
gagttcgaggccaccctggtcaacagagtgagttctaggacagccaaggc
tacacagagaaaccctgtctcgaaaaacaaaaagcaaaacaaaaaaaaaa
agaaacaaacaaacaaaaaggagacagtaatttcactacactgaaaagtg
gaaattaatttatcaatgttttcgttttggttgtataaacattccttgaa
actgccagaaagaaggcttctcctgcccccttttttgagcaaccactgtg
agtcgttctatttgttcaatcatattacgggtgatcagactctgctacac
ttctcatagtgttacagaaattcaacaatatttcttatacagcaaatatg
gattttagtacactgagctgattaaaataaaaattatagcagaagtcata
gttttgaatgacaaaaataataccaatatctcatgtatcagagagaataa
atcacagctagtgcaatcaaaccctcactattagtcacttacgatcatgg
ctactag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_79302272_79302580
seq2: B6Ng01-265O10.b_218_644 (reverse)

seq1  GCACACGCCTTTAATCCCAGCATTTGGGAGGCAGAGGCAGGT-GGATTTC  49
      ||||| |||||||||||||||| | ||||||||||||||||| |||||||
seq2  GCACATGCCTTTAATCCCAGCACTAGGGAGGCAGAGGCAGGTGGGATTTC  50

seq1  TGAGTTTGAGGCCATCCTGGTCTACAGAATGAG-TTCCAGGACAGCCA--  96
      ||| |||||||||| ||||||||||||| |||| |||||||| |||||  
seq2  TGAATTTGAGGCCAGCCTGGTCTACAGAGTGAGTTTCCAGGATAGCCAGG  100

seq1  GGGCTATACAGAGAAACTCTGTCTCG---AAAGAAAAAA-----------  132
      ||||||||||||||||| |||||| |   ||||||||||           
seq2  GGGCTATACAGAGAAACCCTGTCTTGAAAAAAGAAAAAAAATATTACAAA  150

seq1  --------------------------------------------------  132
                                                        
seq2  GCAACAATAATTAAGACAGTGTGGTATGATGCAAAAACATAGAAATCAAT  200

seq1  -------------------------------------------AAAGATT  139
                                                 |||| | 
seq2  GGAAATGAATTAATTCTCTTCAATAGAAACGAATTCTTTTTTTAAAGGTG  250

seq1  TATTTGTTTATT----ATATGTAAATACACTGTAGCTGTCTTCAGACACA  185
      ||||| ||||||    |||| |   || ||||||||||||||||||||||
seq2  TATTTATTTATTTGAAATATATGCGTATACTGTAGCTGTCTTCAGACACA  300

seq1  CCAGAAGAGGGCATCAG---ATCTCATTACAGATGGTTGTGAGCCACCAT  232
      |||||||| ||||||||   ||  ||| | ||||||||||||||||||||
seq2  CCAGAAGAAGGCATCAGATTATTCCATCAAAGATGGTTGTGAGCCACCAT  350

seq1  GTGGTTGCTAGGATTTGAACTCAGGACCTATGGAAGAGCAGTCAGTGCTC  282
      ||||||||| ||||||||||||||||||| ||||||||||||||||||||
seq2  GTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTC  400

seq1  TTAACTGCTGAGCCATCTCTCCAGCCC  309
      |||||||||||||||||||||||||||
seq2  TTAACTGCTGAGCCATCTCTCCAGCCC  427

seq1: chr5_66019954_66021133
seq2: B6Ng01-265O10.g_66_1222

seq1  GAATTCATTTTATTTCCCAGTGAGCAAACAAAAATTCCCTATATATTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTATTTCCCAGTGAGCAAACAAAAATTCCCTATATATTTTT  50

seq1  TAATTTGATAAGGAAAAGGTATTACTTAAGTTTAGATTGCATTACTTCGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGATAAGGAAAAGGTATTACTTAAGTTTAGATTGCATTACTTCGC  100

seq1  TTAGAACAACAAATAGTTAAACATTTTTTTTCTAAGTCAAGTGATAATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACAACAAATAGTTAAACATTTTTTTTCTAAGTCAAGTGATAATAG  150

seq1  TAAGCCTTCTATACAAAGCACTTCAGTACACAGTTAAGATATGCTAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTTCTATACAAAGCACTTCAGTACACAGTTAAGATATGCTAAATA  200

seq1  AGAAATTTTCATTACTGCCAACCCAATTCTAATCATTTTGTTGCTATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTTTCATTACTGCCAACCCAATTCTAATCATTTTGTTGCTATAAA  250

seq1  ACTTCTGTTGCCTTACTGAACTTAAAAATGTTGGGTTTCATTTACTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGTTGCCTTACTGAACTTAAAAATGTTGGGTTTCATTTACTTTTT  300

seq1  GCATATCTCTTCAATTTATCAAAGCATTAAGCATAATGAACTATAACTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATCTCTTCAATTTATCAAAGCATTAAGCATAATGAACTATAACTAT  350

seq1  GTATCTCTTCAAGTAGATTTTTTAGAGGAAATAATTAATGTTATCTTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTCTTCAAGTAGATTTTTTAGAGGAAATAATTAATGTTATCTTTAA  400

seq1  ATAACACAATGGTACCAAGTATCTAACAGTACTCAATGACTACTAAATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACACAATGGTACCAAGTATCTAACAGTACTCAATGACTACTAAATGC  450

seq1  ATGAAAAAAAGATTTTGTGTCCTCTCACATAAATTTAAGTAGAAATCACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAAAAGATTTTGTGTCCTCTCACATAAATTTAAGTAGAAATCACG  500

seq1  ATTTACCACTGCTGGTGCTCTGGATGTCAAGTATTTGAAAATAAACAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACCACTGCTGGTGCTCTGGATGTCAAGTATTTGAAAATAAACAAGG  550

seq1  GACTTGACAATTTCTTCATGTAAGAAACAAAAAGGAGCCGGGCGTGGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGACAATTTCTTCATGTAAGAAACAAAAAGGAGCCGGGCGTGGTGG  600

seq1  CGCACACCTTTAATCCCAGCACTCAGGAGGCAGAGGAGGCGAATTTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACACCTTTAATCCCAGCACTCAGGAGGCAGAGGAGGCGAATTTCTCT  650

seq1  GAGTTCGAGGCCACCCTGGTCAACAGAGTGAGTTCTAGGACAGCCAAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCGAGGCCACCCTGGTCAACAGAGTGAGTTCTAGGACAGCCAAGGC  700

seq1  TACACAGAGAAACCCTGTCTCGAAAAACAAAAAGCAAAACAAAAAAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGAGAAACCCTGTCTCGAAAAACAAAAAGCAAAACAAAAAAAAAA  750

seq1  AGAAACAAACAAACAAAAAGGAGACAGTAATTTCACTACACTGAAAAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAAACAAACAAAAAGGAGACAGTAATTTCACTACACTGAAAAGTG  800

seq1  GAAATTAATTTATCAATGTTTTCGTTTTGGTTGTATAAACATTCCTTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAATTTATCAATGTTTTCGTTTTGGTTGTATAAACATTCCTTGAA  850

seq1  ACTGCCAGAAAGAAGGCTTCTCCTGCCCCCTTTTTTGAGCAACCACTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCAGAAAGAAGGCTTCTCCTGCCCCCTTTTTTGAGCAACCACTGTG  900

seq1  AGTCGTTCTATTTGTTCAATCATATTACGGGGTGATCAGACTCTGCTACA  950
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGTCGTTCTATTTGTTCAATCATATTAC-GGGTGATCAGACTCTGCTACA  949

seq1  CTTCTCATAGTGTTACAGAAATTCAACAATAATTTCTTATACAGCAAATA  1000
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTTCTCATAGTGTTACAGAAATTCAACAAT-ATTTCTTATACAGCAAATA  998

seq1  TGGATTTTAGTAACACTGAGCTGATTTAAAATAAAAATTTATTAGCAGAA  1050
      ||||||||||| |||||||||||| ||||||||||||||   ||||||||
seq2  TGGATTTTAGT-ACACTGAGCTGA-TTAAAATAAAAATT--ATAGCAGAA  1044

seq1  GTTCATAGTTTTTGGAAATGACAAAAAT-ATACCAATATTCTTCAATGTA  1099
      | ||||||||||    |||||||||||| ||||||||| |||   |||||
seq2  G-TCATAGTTTT---GAATGACAAAAATAATACCAATA-TCT--CATGTA  1087

seq1  TTCAAGAGAGATAAATCCACAGCTTAAGGTGCAATTAAAACACTCACTAT  1149
      |   ||||| |||||| |||||||    |||||| | |||| ||||||||
seq2  TCAGAGAGA-ATAAAT-CACAGCT---AGTGCAA-TCAAACCCTCACTAT  1131

seq1  TAGTCAACTCTTACCCAATCATGGGTACTAG  1180
      ||||||   ||||  | ||||||| ||||||
seq2  TAGTCA---CTTA--CGATCATGGCTACTAG  1157