BAC Information

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BAC

Clone NameB6Ng01-266A24
Chromosome5 (Build37)
Map Location 79,326,046 - 79,481,187
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039398, Mthfr-ps1, EG384187
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266A24.bB6Ng01-266A24.g
ACCGA069553GA069554
length1,1451,145
definitionB6Ng01-266A24.b B6Ng01-266A24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,480,022 - 79,481,187)(79,326,046 - 79,326,629)
sequence
gaattcaaactttatgattgcccttctctcttacagctccacactctggt
gggaaaaagtaaagcaaaatcattacagtgattctgggggtcaacaacca
aaaaccctcttaaacttcatataaagattaatgatagaattttcaaaacg
attgctcaaagagattcattattgatttataatgatgtctactagtcatg
cttactctaattgaaccaatgaaaataatagtgaacttttattgacacta
ataataatgtcactcttttgttttccccatgtttgtgggtgattctaata
ctcagatcagctcaataaatatcagtgacttggaagttttagtaaatgaa
ccaaaagaaaaaatgttctttgatttgttcttgatattaaaggcaatgtc
aaataagaataagatatcttgtgtattgtttcaactcattgatttatggt
agcaatatctgtgtcaaccctactgggacttatatccaatgtttaacttg
ttttaaatataaataaataatgaagtttaaaggctgcataagaggactat
atataagtaatgttgtataggaatttacagactatattttcaaaaaatct
tgatactcacttgtcctatatgcaaattttcattcaacttaagggaaaag
ataatggttacttgaaggcagttttgttcaaatcatttgtaaacgcattg
ccaccagtaatagatacgcaaaatatggaaaacatgtcaaatacttttta
aacagataagggagtctgagcttaattagccacttaaatagaaaacaaaa
ggaaatattttttaaaatacattcctatttctttattacaaaaacagtat
catgagtaaacaacacatattagaaaagtgacatttgtagttgtttgttg
tcattctgttagaagttaaaacttttacttacagttgtattttcacaggc
agtccatgtgtacattgacagagaatagttcaggtttctatggaaaagta
atttcaaataattacctgtagcatacattgtgataatgcttattctctag
agcaacaaatgatctttatttctagtttgatacctaatctttgcattcat
gggtgtgatgcttgtatatccttcgtacagatgtcacatctgaag

gaattcctaattctgataaacaacttcagctaagtggctggatataaatt
aactcatactaatcagtggctttcctatactcaaaggataaaaaggctga
gaaagaaattagggaaacaacacccttcacaatagtcacaaaaaaacata
aaataccttggtgtgactctaaccaagaaagtgaaagatctgtatgacaa
gaacttcaagtctctgaagaaagaaatcaaagaagatcacagaagatgga
aagatctcccatgctcatggattagcaggattaatatagtgaaaatggct
atcttgccaaaagcaatctacagattcaatgcaatccctgtcaaaattcc
aattcaatttttcatagagttagaacaagtgatttgcaaattcatttgga
ataacaaaaatctcaagatagaaaaaactattctcaacaataaaagaaat
tctggggaaatcaccatcccttacctcaagccatattacagagcaatagt
gattaaaggacaaacaaaacaaaacaaaacaaaacaaaacaaaaacaaaa
acaaaactgcatgggattggtgacaggtatgtagatcaatggaatagaat
tgaagacctagaaatgaacatacatacctatggtcatttgatctttgcca
aaggagctaaaaccatccagtagaaaaaagacagcattttcaagaaatgg
tgctggctcagctggtggttagtatgtagaagaatgcaaattcattcatc
cttgtacaaagctcaattccaaatggatcaaggacctccacataaaacca
gagacagtgaaacttatagaggagaaagtggggaagaccctcaaacacat
gggcactgagagaaaaatcctgaacagaaaaccaatggcttatgctataa
gatcaacaatagataaatgtgacctcaaaagtttttaacatggtctcact
gttgctctggctgtctatgaactctctggttgatgcgaagtcttactcat
gtagatccacctgcctcttacctcagagtgctaactgaaaagcatgccac
atgagcccaagcctgtaattcttacatatgtggattttttttgagacagg
ctttccttgtgtagcttgcgttcctggacttcactttgtagacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_79480022_79481187
seq2: B6Ng01-266A24.b_46_1190 (reverse)

seq1  CTTCAGATGGTGCCACTCCCTGGTCCAAGGATATACAAACCATCACACCC  50
      |||||||| ||| ||    |||  | |||||||||| || ||||||||||
seq2  CTTCAGAT-GTGACA---TCTGTACGAAGGATATAC-AAGCATCACACCC  45

seq1  AATGAATGCAAAGATTTAGTTAACCAAAACTTAGAAATAAAAGATCAATT  100
       ||||||||||||| |||| || |  |||| ||||||| ||||||||  |
seq2  -ATGAATGCAAAGA-TTAGGTATC--AAAC-TAGAAAT-AAAGATCA--T  87

seq1  TTGTTGCCTCTAGGAGAATTAAGCATTATCACAATTGTAATGCTACAGGT  150
      |||||| ||||| ||||| ||||||||||||||| ||| |||||||||||
seq2  TTGTTG-CTCTA-GAGAA-TAAGCATTATCACAA-TGT-ATGCTACAGGT  132

seq1  AATTATTTGAAATTTACTTTTCCATAGAAACCTTGAACTATTCTCTGTCA  200
      |||||||||||| ||||||||||||||||||| |||||||||||||||||
seq2  AATTATTTGAAA-TTACTTTTCCATAGAAACC-TGAACTATTCTCTGTCA  180

seq1  ATGTACACATGGACTGCCTGTGAAAATACAACTGTAAGTAAAAGTTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACACATGGACTGCCTGTGAAAATACAACTGTAAGTAAAAGTTTTAA  230

seq1  CCTTCTAACAGAATGACAACAAACAACTACAAATGTCACTTTTCTAATAT  300
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CTTCTAACAGAATGACAACAAACAACTACAAATGTCACTTTTCTAATAT  279

seq1  GTGTTGTTTACTCATGATACTGTTTTTGTAATAAAGAAATAGGAATGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGTTTACTCATGATACTGTTTTTGTAATAAAGAAATAGGAATGTAT  329

seq1  TTTAAAAAATATTTCCTTTTGTTTTCTATTTAAGTGGCTAATTAAGCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAATATTTCCTTTTGTTTTCTATTTAAGTGGCTAATTAAGCTCA  379

seq1  GACTCCCTTATCTGTTTAAAAAGTATTTGACATGTTTTCCATATTTTGCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCCTTATCTGTTTAAAAAGTATTTGACATGTTTTCCATATTTTGCG  429

seq1  TATCTATTACTGGTGGCAATGCGTTTACAAATGATTTGAACAAAACTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATTACTGGTGGCAATGCGTTTACAAATGATTTGAACAAAACTGCC  479

seq1  TTCAAGTAACCATTATCTTTTCCCTTAAGTTGAATGAAAATTTGCATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTAACCATTATCTTTTCCCTTAAGTTGAATGAAAATTTGCATATA  529

seq1  GGACAAGTGAGTATCAAGATTTTTTGAAAATATAGTCTGTAAATTCCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAGTGAGTATCAAGATTTTTTGAAAATATAGTCTGTAAATTCCTAT  579

seq1  ACAACATTACTTATATATAGTCCTCTTATGCAGCCTTTAAACTTCATTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATTACTTATATATAGTCCTCTTATGCAGCCTTTAAACTTCATTAT  629

seq1  TTATTTATATTTAAAACAAGTTAAACATTGGATATAAGTCCCAGTAGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATATTTAAAACAAGTTAAACATTGGATATAAGTCCCAGTAGGGT  679

seq1  TGACACAGATATTGCTACCATAAATCAATGAGTTGAAACAATACACAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACAGATATTGCTACCATAAATCAATGAGTTGAAACAATACACAAGA  729

seq1  TATCTTATTCTTATTTGACATTGCCTTTAATATCAAGAACAAATCAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTATTCTTATTTGACATTGCCTTTAATATCAAGAACAAATCAAAGA  779

seq1  ACATTTTTTCTTTTGGTTCATTTACTAAAACTTCCAAGTCACTGATATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTTTCTTTTGGTTCATTTACTAAAACTTCCAAGTCACTGATATTT  829

seq1  ATTGAGCTGATCTGAGTATTAGAATCACCCACAAACATGGGGAAAACAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGCTGATCTGAGTATTAGAATCACCCACAAACATGGGGAAAACAAA  879

seq1  AGAGTGACATTATTATTAGTGTCAATAAAAGTTCACTATTATTTTCATTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGACATTATTATTAGTGTCAATAAAAGTTCACTATTATTTTCATTG  929

seq1  GTTCAATTAGAGTAAGCATGACTAGTAGACATCATTATAAATCAATAATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAATTAGAGTAAGCATGACTAGTAGACATCATTATAAATCAATAATG  979

seq1  AATCTCTTTGAGCAATCGTTTTGAAAATTCTATCATTAATCTTTATATGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTTTGAGCAATCGTTTTGAAAATTCTATCATTAATCTTTATATGA  1029

seq1  AGTTTAAGAGGGTTTTTGGTTGTTGACCCCCAGAATCACTGTAATGATTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAGAGGGTTTTTGGTTGTTGACCCCCAGAATCACTGTAATGATTT  1079

seq1  TGCTTTACTTTTTCCCACCAGAGTGTGGAGCTGTAAGAGAGAAGGGCAAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTACTTTTTCCCACCAGAGTGTGGAGCTGTAAGAGAGAAGGGCAAT  1129

seq1  CATAAAGTTTGAATTC  1166
      ||||||||||||||||
seq2  CATAAAGTTTGAATTC  1145


seq1: chr5_79326046_79326629
seq2: B6Ng01-266A24.g_638_1209

seq1  CAGGTATGTAGATCAATGGAATAGAATTGAAGACCTAGAAATGAACATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATGTAGATCAATGGAATAGAATTGAAGACCTAGAAATGAACATAC  50

seq1  ATACCTATGGTCATTTGATCTTTGCCAAAGGAGCTAAAACCATCCAGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTATGGTCATTTGATCTTTGCCAAAGGAGCTAAAACCATCCAGTAG  100

seq1  AAAAAAGACAGCATTTTCAAGAAATGGTGCTGGCTCAGCTGGTGGTTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGACAGCATTTTCAAGAAATGGTGCTGGCTCAGCTGGTGGTTAGT  150

seq1  ATGTAGAAGAATGCAAATTCATTCATCCTTGTACAAAGCTCAATTCCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAAGAATGCAAATTCATTCATCCTTGTACAAAGCTCAATTCCAAA  200

seq1  TGGATCAAGGACCTCCACATAAAACCAGAGACAGTGAAACTTATAGAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCAAGGACCTCCACATAAAACCAGAGACAGTGAAACTTATAGAGGA  250

seq1  GAAAGTGGGGAAGACCCTCAAACACATGGGCACTGAGAGAAAAATCCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGGGGAAGACCCTCAAACACATGGGCACTGAGAGAAAAATCCTGA  300

seq1  ACAGAAAACCAATGGCTTATGCTATAAGATCAACAATAGATAAATGTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAACCAATGGCTTATGCTATAAGATCAACAATAGATAAATGTGAC  350

seq1  CTCAAAAGTTTTTAACATGGTCTCACTGTTTGCTCTGGCTGTCTATGAAC  400
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTCAAAAGTTTTTAACATGGTCTCACTG-TTGCTCTGGCTGTCTATGAAC  399

seq1  TCTCTGGGTTGATGCGGAAGGTCTTTACCTCATGTAGATTCCACCTGCCT  450
      ||||| ||||||||||  | |||||   |||||||||| |||||||||||
seq2  TCTCT-GGTTGATGCG--AAGTCTT--ACTCATGTAGA-TCCACCTGCCT  443

seq1  C-TACCTCCAGAGTGCTAACCTGAAAAGCATGCCACATGAAGCCCAGCCC  499
      | ||||| ||||||||||| ||||||||||||||||||| ||||||  ||
seq2  CTTACCT-CAGAGTGCTAA-CTGAAAAGCATGCCACATG-AGCCCAAGCC  490

seq1  TGTAATTCTTACATATGTGATTTTTTTTTTGAGACAGGGTTTCTCTGTGT  549
      |||||||||||||||||||   |||||||||||||||| ||||  |||||
seq2  TGTAATTCTTACATATGTG-GATTTTTTTTGAGACAGGCTTTCCTTGTGT  539

seq1  AGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCA  584
      ||  || ||  |||||||  |||||||||||||||
seq2  AG--CTTGCGTTCCTGGACTTCACTTTGTAGACCA  572


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