BAC Information

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BAC

Clone NameB6Ng01-266N15
Chromosome5 (Build37)
Map Location 79,641,745 - 79,787,536
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039398, Mthfr-ps1, EG384187
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266N15.bB6Ng01-266N15.g
ACCGA070141GA070142
length1,1851,183
definitionB6Ng01-266N15.b B6Ng01-266N15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,786,332 - 79,787,536)(79,641,745 - 79,642,918)
sequence
gaattccattttaaatgatatagacccattcatccaaagtttcaccacta
tatactacatagtgaaagacttttacactggcatccacttcatagacact
ctacttttagatgtttcagctcttttcatatatcttattgttcaataaaa
acccataaaccagtggcatagaagggataacctcagattatacatgagga
aagagaactaactgtctgttaaaattacacttgtgaatagtctaacatca
gacagtttagcctcagttgtatgccttggcacccacagcagtaccataaa
attttaccttacaaagttgtatttatttgggtatgatgcatattttgatg
ccaatttgtagccttaatatttcttatagaattgtgaacagacatcaaaa
cccagatatgtaatacttgacaacaaaaaaattaagtattttaacagctt
cctatttgctgtatcaatgagttcattttgcatactaatagaagcattgg
caagatgttactaacagatcattgaagagcccctctccaccaaacatctg
taaacttccaataagtcatgaataattaacttatggaagttacattatct
actttcacattcaggtaatttttcatacactcctacttcataattttcca
agatcattctggggcaaaagcaaaaatacctggaacgacaggtaagagtc
ctgtgacccttcactaccttcttatattactgattgctaatagctactcc
accattgccataaacctaattatcatggcatatttatggcatcatggacc
tagatatgatggttcttcttaatttcttgaatgattatcagactaaggta
attcacattctcacgtggggatagggtataactagaagtaaagttatact
ccagaagatgcattctagctattttgttgttattagcttgtttttatttt
tattttttatactttgaggaaatccaatggaactacatcatctttttggt
tacttaccacaaactagtacttgctatacactgcacacttcttagattaa
agatatttttatttcagatacatttatctgacatatatagtaggttttaa
tcatttacctcaactcatgaaatttctgtgtcctcattccagttctcatc
agtcgctgcttgaaccggatcttggcataaaacca

gaattcttggtcgtgataagttttgctttgaaaatagaaagcattttggt
acagatattttctttcattttttttttttaatttttactagggacatttt
cttccaaatggaattagagcactaatatattttaaagtagttaaaatctg
cctgttacacagaagacacttgcaaatatcagaaataattaaaaaatcaa
ttccttttaaaattaaatagatgtcattctttagatatgaatatttaaat
gtcatgcagcttcagcctatctacagacttacatctccatctttcactga
gaaactattaaacctcatttaagaaaagaacctatgaactgaggatttca
gtagagatcaactagattgagttatagttgaaatacttccctgaaaaaat
tctaaggcagaggaatgctaatgaaaaaaatctaccaaaggcatagacaa
gagaggatatcaactctacaacgatataagaggagagttatcattaattg
ttttaacactaaactagcctaacatgggacaatgaaaggaaactaaaaat
aaatgttcctaaagaacacaaacatagaaatcttcaacaaatcccatcaa
tattgcaagcagatgataaatcttgaacagtgagcattagagatattaga
aaaccttttaatgaattcaacaggtgaaacaatataaagtcttgagatta
taagagatactggaaatatattgaaaaaaaacctaagcatatgaacatag
aaaggtattataatatttactaacttaataatggcttcttgggttgatac
acaaattcatatactgaagtgctaactaccagaaaactaaatgtgggtgt
atttgcaaacaggcctttacttaataaatgaatttatttattaaataaat
tcatataaaatatttattaaatatttattatatatactctaaccctccta
aattcctaatgacctttcaagtaaggaaggaagactcaattgtgagtgtg
ctgagacttcatgtagccaccacaggaactgctgttcttctaatagatcc
tctgagaagaatacctagagaagtgcctccctccacaaacccagcagagc
tgaccctcccacctcagcatttctggaccatcagaggcagtctctctgtg
cccatttattatggaattggaaatgccttaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_79786332_79787536
seq2: B6Ng01-266N15.b_42_1226 (reverse)

seq1  TGGTTTTATGCCAAGACTCCGTTCTCAAGCAACCGACTGATGAGGAAATT  50
      |||||||||||||||| |||| | |||||| | |||||||||||  || |
seq2  TGGTTTTATGCCAAGA-TCCGGT-TCAAGC-AGCGACTGATGAG--AACT  45

seq1  TGAATGAGGACACAGATATTTTCCATGAGGTTGAGTTAAATGAATAAAAA  100
       ||||||||||||||| ||||  ||||| |||||| ||||||| ||||| 
seq2  GGAATGAGGACACAGAAATTT--CATGA-GTTGAGGTAAATGATTAAAAC  92

seq1  CTACCTATAATATGTCAAGATAAATTGTAATCCTGAAATAAAAATATCTT  150
      ||| |||| ||||||| ||||||| ||||   ||||||||||||||||||
seq2  CTA-CTAT-ATATGTC-AGATAAA-TGTA--TCTGAAATAAAAATATCTT  136

seq1  TAATCTAAGAAGTTGTGCAGTGGTTATAGGCAAGTACCTAGTTTGTTGGT  200
      |||||||||||| |||||||||  |||| ||||||| |||||||| ||||
seq2  TAATCTAAGAAG-TGTGCAGTG--TATA-GCAAGTA-CTAGTTTG-TGGT  180

seq1  AAGTAACCAAAAAGATGATGTAGTTCCATTGGATTTCCTCAAAGTATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAACCAAAAAGATGATGTAGTTCCATTGGATTTCCTCAAAGTATAAA  230

seq1  AAATAAAAATAAAAACAAGCTAATAACAACAAAATAGCTAGAATGCATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAATAAAAACAAGCTAATAACAACAAAATAGCTAGAATGCATCT  280

seq1  TCTGGAGTATAACTTTACTTCTAGTTATACCCTATCCCCACGTGAGAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGTATAACTTTACTTCTAGTTATACCCTATCCCCACGTGAGAATG  330

seq1  TGAATTACCTTAGTCTGATAATCATTCAAGAAATTAAGAAGAACCATCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTACCTTAGTCTGATAATCATTCAAGAAATTAAGAAGAACCATCAT  380

seq1  ATCTAGGTCCATGATGCCATAAATATGCCATGATAATTAGGTTTATGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGGTCCATGATGCCATAAATATGCCATGATAATTAGGTTTATGGCA  430

seq1  ATGGTGGAGTAGCTATTAGCAATCAGTAATATAAGAAGGTAGTGAAGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGAGTAGCTATTAGCAATCAGTAATATAAGAAGGTAGTGAAGGGT  480

seq1  CACAGGACTCTTACCTGTCGTTCCAGGTATTTTTGCTTTTGCCCCAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGACTCTTACCTGTCGTTCCAGGTATTTTTGCTTTTGCCCCAGAAT  530

seq1  GATCTTGGAAAATTATGAAGTAGGAGTGTATGAAAAATTACCTGAATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTGGAAAATTATGAAGTAGGAGTGTATGAAAAATTACCTGAATGTG  580

seq1  AAAGTAGATAATGTAACTTCCATAAGTTAATTATTCATGACTTATTGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGATAATGTAACTTCCATAAGTTAATTATTCATGACTTATTGGAA  630

seq1  GTTTACAGATGTTTGGTGGAGAGGGGCTCTTCAATGATCTGTTAGTAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACAGATGTTTGGTGGAGAGGGGCTCTTCAATGATCTGTTAGTAACA  680

seq1  TCTTGCCAATGCTTCTATTAGTATGCAAAATGAACTCATTGATACAGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCAATGCTTCTATTAGTATGCAAAATGAACTCATTGATACAGCAA  730

seq1  ATAGGAAGCTGTTAAAATACTTAATTTTTTTGTTGTCAAGTATTACATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAGCTGTTAAAATACTTAATTTTTTTGTTGTCAAGTATTACATAT  780

seq1  CTGGGTTTTGATGTCTGTTCACAATTCTATAAGAAATATTAAGGCTACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTTTGATGTCTGTTCACAATTCTATAAGAAATATTAAGGCTACAA  830

seq1  ATTGGCATCAAAATATGCATCATACCCAAATAAATACAACTTTGTAAGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCATCAAAATATGCATCATACCCAAATAAATACAACTTTGTAAGGT  880

seq1  AAAATTTTATGGTACTGCTGTGGGTGCCAAGGCATACAACTGAGGCTAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTTATGGTACTGCTGTGGGTGCCAAGGCATACAACTGAGGCTAAA  930

seq1  CTGTCTGATGTTAGACTATTCACAAGTGTAATTTTAACAGACAGTTAGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGATGTTAGACTATTCACAAGTGTAATTTTAACAGACAGTTAGTT  980

seq1  CTCTTTCCTCATGTATAATCTGAGGTTATCCCTTCTATGCCACTGGTTTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCCTCATGTATAATCTGAGGTTATCCCTTCTATGCCACTGGTTTA  1030

seq1  TGGGTTTTTATTGAACAATAAGATATATGAAAAGAGCTGAAACATCTAAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTTTATTGAACAATAAGATATATGAAAAGAGCTGAAACATCTAAA  1080

seq1  AGTAGAGTGTCTATGAAGTGGATGCCAGTGTAAAAGTCTTTCACTATGTA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAGTGTCTATGAAGTGGATGCCAGTGTAAAAGTCTTTCACTATGTA  1130

seq1  GTATATAGTGGTGAAACTTTGGATGAATGGGTCTATATCATTTAAAATGG  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATAGTGGTGAAACTTTGGATGAATGGGTCTATATCATTTAAAATGG  1180

seq1  AATTC  1205
      |||||
seq2  AATTC  1185


seq1: chr5_79641745_79642918
seq2: B6Ng01-266N15.g_71_1253

seq1  GAATTCTTGGTCGTGATAAGTTTTGCTTTGAAAATAGAAAGCATTTTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGTCGTGATAAGTTTTGCTTTGAAAATAGAAAGCATTTTGGT  50

seq1  ACAGATATTTTCTTTCATTTTTTTTTTTTAATTTTTACTAGGGACATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATATTTTCTTTCATTTTTTTTTTTTAATTTTTACTAGGGACATTTT  100

seq1  CTTCCAAATGGAATTAGAGCACTAATATATTTTAAAGTAGTTAAAATCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAATGGAATTAGAGCACTAATATATTTTAAAGTAGTTAAAATCTG  150

seq1  CCTGTTACACAGAAGACACTTGCAAATATCAGAAATAATTAAAAAATCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTACACAGAAGACACTTGCAAATATCAGAAATAATTAAAAAATCAA  200

seq1  TTCCTTTTAAAATTAAATAGATGTCATTCTTTAGATATGAATATTTAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTAAAATTAAATAGATGTCATTCTTTAGATATGAATATTTAAAT  250

seq1  GTCATGCAGCTTCAGCCTATCTACAGACTTACATCTCCATCTTTCACTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGCAGCTTCAGCCTATCTACAGACTTACATCTCCATCTTTCACTGA  300

seq1  GAAACTATTAAACCTCATTTAAGAAAAGAACCTATGAACTGAGGATTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTATTAAACCTCATTTAAGAAAAGAACCTATGAACTGAGGATTTCA  350

seq1  GTAGAGATCAACTAGATTGAGTTATAGTTGAAATACTTCCCTGAAAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGATCAACTAGATTGAGTTATAGTTGAAATACTTCCCTGAAAAAAT  400

seq1  TCTAAGGCAGAGGAATGCTAATGAAAAAAATCTACCAAAGGCATAGACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGGCAGAGGAATGCTAATGAAAAAAATCTACCAAAGGCATAGACAA  450

seq1  GAGAGGATATCAACTCTACAACGATATAAGAGGAGAGTTATCATTAATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGATATCAACTCTACAACGATATAAGAGGAGAGTTATCATTAATTG  500

seq1  TTTTAACACTAAACTAGCCTAACATGGGACAATGAAAGGAAACTAAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACACTAAACTAGCCTAACATGGGACAATGAAAGGAAACTAAAAAT  550

seq1  AAATGTTCCTAAAGAACACAAACATAGAAATCTTCAACAAATCCCATCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTCCTAAAGAACACAAACATAGAAATCTTCAACAAATCCCATCAA  600

seq1  TATTGCAAGCAGATGATAAATCTTGAACAGTGAGCATTAGAGATATTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCAAGCAGATGATAAATCTTGAACAGTGAGCATTAGAGATATTAGA  650

seq1  AAACCTTTTAATGAATTCAACAGGTGAAACAATATAAAGTCTTGAGATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTTTAATGAATTCAACAGGTGAAACAATATAAAGTCTTGAGATTA  700

seq1  TAAGAGATACTGGAAATATATTGAAAAAAAACCTAAGCATATGAACATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGATACTGGAAATATATTGAAAAAAAACCTAAGCATATGAACATAG  750

seq1  AAAGGTATTATAATATTTACTAACTTAATAATGGCTTCTTGGGTTGATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTATTATAATATTTACTAACTTAATAATGGCTTCTTGGGTTGATAC  800

seq1  ACAAATTCATATACTGAAGTGCTAACTACCAGAAAACTAAATGTGGGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTCATATACTGAAGTGCTAACTACCAGAAAACTAAATGTGGGTGT  850

seq1  ATTTGCAAACAGGCCTTTACTTAATAAATGAATTTATTTATTAAATAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCAAACAGGCCTTTACTTAATAAATGAATTTATTTATTAAATAAAT  900

seq1  TCATATAAAATATTTATTAAATATTTATTTATATATACTCTAA-CCTCCT  949
      ||||||||||||||||||||||||||| ||||||||||||||| ||||||
seq2  TCATATAAAATATTTATTAAATATTTA-TTATATATACTCTAACCCTCCT  949

seq1  AAATTCCTAATGACCTTTCAGGTAAGGAAGGGAAGACTCAATTGTGAGTG  999
      |||||||||||||||||||| |||||||| ||||||||||||||||||||
seq2  AAATTCCTAATGACCTTTCAAGTAAGGAA-GGAAGACTCAATTGTGAGTG  998

seq1  TGCTGAAGACTTCATGTAG-CACACAAGGAACTGCTG-TCTTCT-ATAGA  1046
      ||||| ||||||||||||| |||   ||||||||||| |||||| |||||
seq2  TGCTG-AGACTTCATGTAGCCACCACAGGAACTGCTGTTCTTCTAATAGA  1047

seq1  T-CTCTGAGAAG-ATACTAGGAGAAAGTG-CTCC--TCACAAACCCAAGC  1091
      | |||||||||| ||||   ||| ||||| ||||   ||||||||| |||
seq2  TCCTCTGAGAAGAATACCTAGAG-AAGTGCCTCCCTCCACAAACCC-AGC  1095

seq1  AGAGCTGACACTCC--ACTCAGCATTTCT-GAGCATCAAGAGGGA-AGTC  1137
      ||||||||| ||||   |||||||||||| || |||| ||||| |   ||
seq2  AGAGCTGACCCTCCCACCTCAGCATTTCTGGACCATC-AGAGGCAGTCTC  1144

seq1  TCTGTGCCATTTTATTATGGAAATGGAAATGC--TAATG  1174
      ||||||||  |||||||||||| |||||||||  |||||
seq2  TCTGTGCCCATTTATTATGGAATTGGAAATGCCTTAATG  1183


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