BAC Information

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BAC

Clone NameB6Ng01-267N02
Chromosome5 (Build37)
Map Location 51,563,447 - 51,564,618
singlet/doubletsinglet
Overlap genenone
Upstream geneEG637307, LOC100041015, LOC242987, EG624734, LOC666265, LOC100041059
Downstream genePpargc1a, Dhx15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-267N02.bB6Ng01-267N02.g
ACCGA070838GA070839
length1,1741,171
definitionB6Ng01-267N02.b B6Ng01-267N02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagctctgagtcccatattttaagggggttatttgatt
ttctggagtccaccctcttgagttctctgtatatattggatattagtccc
ctatctgatttatgctaggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgtagaagctttgcagtttca
tgaggtcccatttgtcaattctcaatcttacagcacaagccattgctgtt
ctattcaggaattttttccctgtgcctatatcttcgaggcttttccccac
tttctcctctataagtttcagtgtctctgattttatgtgaagttccttga
tccacttcgatttgaccttagtacaaggagagaggaatgggtcaattcgc
attcttctacatgataacaaccagttgtgccagcaccctttgctgaaaat
gctatctttcttccactggatggttttaactcccttgttgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctactagtccgtcactataccagtaccatgcagtttttataacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggtatttt
tatccttgagaagagcttttgctatcctaggatttttgttattccagatg
aatttgcaaattgctctttctaattagttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgagagatctttcttttct
tttttctttcttctgagatcttctttaatttctttcttcagagacttgaa
gtttttatcatacagatctttcactttccttagttagagtcatgccaagg
tattttatattattgtgactattgagaaggtgttgtttccctaaatttct
tctcagctgttattctttgtgtagagaaaggccattgactagttgagtat
tttatatcagctactttcacgagcctcttaatcagttagggagttctctg
gttgaatttttaggtcactaattaactatcaattatctggcaaagggtaa
ttgtgacatcctctttttccacat
gaattctgaggctagattatgaagatgaatatagattttttttctttgct
cccctgtttttcttcatgttctgacctgccgttgggtttctcgtttacca
tgtaattagctctgtgtctctcattggagagatcatgaaatgacacacta
aaacttttagataaaattcagtatgattaaaactccgagctttagctcta
tacatatgaggccagatgttggcattattagacgactcctcaacaggacc
tgggatcaaaactatagaactgagtgagttccttctaaatttatgactca
tagaaatgtgagataattttttattaaatcatgacattaaacagtgaggt
gtcttatcacagtgactgttgctagtctagtgctcacctaagaatacttc
agacatcactgaatatgaaatgagatgcataaaattgccttttctagaat
gccttagagaatatgagtgtatcaatgaaaatttatgtcctattaaagcc
acaccattttaacattattaacatttgaaaaatgcatttatatttttata
caacagtacagtcggaagggagtattgatagagacagagaacttgctaag
catatctaagccccacatatccattttcagaaagcctgtttgaaaagtaa
catttgtagtaaagcacagaacaggatggaggtttttttttttccccata
atgtattcggatacccatctctgacagctccatggcacctatgataccaa
aacctagaacactggtgagtaatcttcatctacagaaaggttctagaatg
ttccttcccccccaaaaaaaaacttgggtactggatattgatggttatta
ttacttgggtaccacacaggtaacctctacagcaggtagttcacagaaga
tatctttactgtgagaaatgatatattttttcaaagtcatccactcatat
tctttgtaaacagttcctggatctaaccttattcatgtgtctctcagttc
tgatgtatagatggacatgtctttctgctgtagaagacttatcgagtgta
atcctttcaggacatgttgtgttctcaggttgcaacaagaaccttttagt
agtgtcttatgtacagaaatgacttgcttctgggtctatgttcctgaggg
tacatattccaagaacaggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_51563447_51564618
seq2: B6Ng01-267N02.g_69_1239 (reverse)

seq1  CTCCTGT--CTGGGATATGTCACCCTCA-GAACATAGCCCCAGAAGCAAA  47
      |||||||   ||| |||||| ||||||| |||||||| |||||||||  |
seq2  CTCCTGTTCTTGGAATATGT-ACCCTCAGGAACATAGACCCAGAAGC--A  47

seq1  AGTCTATTCTGTACCATAAGACACTTACTAAAAGGT--CTGTGCCAACCT  95
      ||||  ||||||| |||||||||| |||||||||||   |||  ||||||
seq2  AGTCATTTCTGTA-CATAAGACAC-TACTAAAAGGTTCTTGTTGCAACCT  95

seq1  GAG-ACACAACATGTCCTGGAAGGATTACACTCGATAAGTCTTCTAACAG  144
      ||| ||||||||||||||| ||||||||||||||||||||||||| ||| 
seq2  GAGAACACAACATGTCCTGAAAGGATTACACTCGATAAGTCTTCT-ACA-  143

seq1  GCAGAAAGACATGTCCCATCTATACATCAGAACTGAGAGACACATGAATA  194
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCAGAAAGACATGT-CCATCTATACATCAGAACTGAGAGACACATGAATA  192

seq1  AGGTTAGATCCAGGAACTGTTTACAAAG-ATATGAGTGGATGACTTTG-A  242
      |||||||||||||||||||||||||||| ||||||||||||||||||| |
seq2  AGGTTAGATCCAGGAACTGTTTACAAAGAATATGAGTGGATGACTTTGAA  242

seq1  AAAATATATCATTTCTCACAGTAAAGATATCTTCTGTTGAACTACCTGCT  292
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAAATATATCATTTCTCACAGTAAAGATATCTTCTG-TGAACTACCTGCT  291

seq1  GTAGAGGTTACCTGTGTGGTACCCAAGTAATAATAACCATCAATATCCAG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGGTTACCTGTGTGGTACCCAAGTAATAATAACCATCAATATCCAG  341

seq1  TACCCAAGTTTTTTTTTGGGGGGGAAGGAACATTCTAGAACCTTTCTGTA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAAGTTTTTTTTTGGGGGGGAAGGAACATTCTAGAACCTTTCTGTA  391

seq1  GATGAAGATTACTCACCAGTGTTCTAGGTTTTGGTATCATAGGTGCCATG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGATTACTCACCAGTGTTCTAGGTTTTGGTATCATAGGTGCCATG  441

seq1  GAGCTGTCAGAGATGGGTATCCGAATACATTATGGGGAAAAAAAAAAACC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTCAGAGATGGGTATCCGAATACATTATGGGGAAAAAAAAAAACC  491

seq1  TCCATCCTGTTCTGTGCTTTACTACAAATGTTACTTTTCAAACAGGCTTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCTGTTCTGTGCTTTACTACAAATGTTACTTTTCAAACAGGCTTT  541

seq1  CTGAAAATGGATATGTGGGGCTTAGATATGCTTAGCAAGTTCTCTGTCTC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAATGGATATGTGGGGCTTAGATATGCTTAGCAAGTTCTCTGTCTC  591

seq1  TATCAATACTCCCTTCCGACTGTACTGTTGTATAAAAATATAAATGCATT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATACTCCCTTCCGACTGTACTGTTGTATAAAAATATAAATGCATT  641

seq1  TTTCAAATGTTAATAATGTTAAAATGGTGTGGCTTTAATAGGACATAAAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAATGTTAATAATGTTAAAATGGTGTGGCTTTAATAGGACATAAAT  691

seq1  TTTCATTGATACACTCATATTCTCTAAGGCATTCTAGAAAAGGCAATTTT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTGATACACTCATATTCTCTAAGGCATTCTAGAAAAGGCAATTTT  741

seq1  ATGCATCTCATTTCATATTCAGTGATGTCTGAAGTATTCTTAGGTGAGCA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATCTCATTTCATATTCAGTGATGTCTGAAGTATTCTTAGGTGAGCA  791

seq1  CTAGACTAGCAACAGTCACTGTGATAAGACACCTCACTGTTTAATGTCAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTAGCAACAGTCACTGTGATAAGACACCTCACTGTTTAATGTCAT  841

seq1  GATTTAATAAAAAATTATCTCACATTTCTATGAGTCATAAATTTAGAAGG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAATAAAAAATTATCTCACATTTCTATGAGTCATAAATTTAGAAGG  891

seq1  AACTCACTCAGTTCTATAGTTTTGATCCCAGGTCCTGTTGAGGAGTCGTC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACTCAGTTCTATAGTTTTGATCCCAGGTCCTGTTGAGGAGTCGTC  941

seq1  TAATAATGCCAACATCTGGCCTCATATGTATAGAGCTAAAGCTCGGAGTT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATGCCAACATCTGGCCTCATATGTATAGAGCTAAAGCTCGGAGTT  991

seq1  TTAATCATACTGAATTTTATCTAAAAGTTTTAGTGTGTCATTTCATGATC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCATACTGAATTTTATCTAAAAGTTTTAGTGTGTCATTTCATGATC  1041

seq1  TCTCCAATGAGAGACACAGAGCTAATTACATGGTAAACGAGAAACCCAAC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAATGAGAGACACAGAGCTAATTACATGGTAAACGAGAAACCCAAC  1091

seq1  GGCAGGTCAGAACATGAAGAAAAACAGGGGAGCAAAGAAAAAAAATCTAT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTCAGAACATGAAGAAAAACAGGGGAGCAAAGAAAAAAAATCTAT  1141

seq1  ATTCATCTTCATAATCTAGCCTCAGAATTC  1172
      ||||||||||||||||||||||||||||||
seq2  ATTCATCTTCATAATCTAGCCTCAGAATTC  1171