BAC Information

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BAC

Clone NameB6Ng01-270A05
Chromosome5 (Build37)
Map Location 81,875,323 - 82,011,728
singlet/doubletdoublet
Overlap geneLphn3
Upstream geneLOC100039506, LOC100039384
Downstream geneEG433912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270A05.bB6Ng01-270A05.g
ACCGA072465GA072466
length1,1511,177
definitionB6Ng01-270A05.b B6Ng01-270A05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,010,583 - 82,011,728)(81,875,323 - 81,876,488)
sequence
gaattctcctctgcctatagaaaggggctacaaggttcctcggatgtcag
cagggaccatcaattcttaaagtccacaaagcactagttcctcaccctct
ttttatttccctcagcgtctctttcacaaatccaaccttctttttgcacc
acctctttgacagagtgcctattgatgttgtctctgttagccaaatactt
gtttatgctgtccagctgagaagaccctggttttagctatgttaagaaat
acatcataggaaattaccctcatacggttttggaaaagatttaattttta
agtgtatgaacggttcgcctgcatgctcgtatgtacgtcttgtacatgcc
tagtgcctggggaaaccagagagagtctcatctcgtggatggttgtgaat
tgtcatccaggtaagggaactgaacctaggtcacccactctgaactgatg
agccgtctctccaggtctcttcccttattctgctatgaactcgactgcat
ggtgtcactactagtaacatgccatctgctgctagatcgctagattctca
aaggagaattttttgtcttgttttcctcccagaagcacgattactaatcc
ataagcaaacctgggtctcactaagcaagcaaatgagttatacgtacggc
ttccaagagtatgggtgttatttagcatctccgaatatgcggttctttat
tagatgtgacccagatgttagccgcttttgaaatttcacacatagacaat
gttttatattctagaattctaaaggtttcccagtttcagcttttacgtgc
tgactgtttaggggagaaggagaaccagtaaagctgatttgaatggactc
ttcatttgtatggccactaattccagagggcaactgatcataaattaaat
gtctgacattcggtaatggatgattgtatctgacataatgaagttataat
gggaaggtgtccgcacacggcttgactattaagtgcacattttattgtcc
ctgcacaggtggtgatggcgatagcctgtacaaatcatctccagaaatgt
caaaataggctcctttgctgataaagtaccacacatgttttattaagagg
aggcagcttgtcttagaacttgttccatctcgctcatttgaaacaatctt
t

gaattctgggtggaatgagattggcccatccaaggccatgtcagctataa
ttatagaattcaattctttgtaaactgtatttgttagtgtgtctatggcg
tgtgtgtgtgtgttgcatctagtggtttgggtatgtagaccaaaggacaa
catttgagtattagctcttgccttcactcctgtggggtatgaggatctaa
cactacggactttgtagcattctctttcttttatgttctatgccattcta
atgcatggctgaaaacacacagtcatgccatctggtacactctaaagaaa
acctagtagttaattgttgtatatctaggtatacagaaagaatagcaagg
tgacagtgactttaaaatgtagctattgggtggacatggttggcagacat
ttaataccagcatttggaaggcagaggcaggagaatctctgtgaattgga
ggccagcataacctagataatgaactccaggacaaatcgagagataccat
ctcaaaattaaaataaaaagtaaaagataaaaaaaagaaaacaaggaaaa
agaaattattcctttgcatgcttttcttttttattttatttttgttatta
atcattttattcatttacatttcaaatgatatcccccttcccagttaccc
ctccaccaatcccccatctcattgcccttctcctccctcctcttggcctc
tattagggtgctcctccacccattcacccactcccaacttacccctctag
catctccctactctggggcatcaagtctccctcctttcccattgatgtca
gataaggcccttctctgctacctatgtatctggagagaccatctgtatac
ttcttttctaaattagcccagaccccttcctttcttctgtttggtctccc
aactccccccccccaattcttccccctgctcttcctcctcctgttcctct
tcttcctccccctcctttatatctgctgtcagcaacgctaattttgcaac
tatcagcttatgagtacataactggtgtggattttttctgtcattcataa
cagtaagctagaaaaatgtaagaactgttcaggtgtcctggaaaatggag
ttgttggggctacggggagaagtaaaataaccttggaatctggatacctg
cagtgacctatggagtgcattctcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_82010583_82011728
seq2: B6Ng01-270A05.b_47_1197 (reverse)

seq1  AAAGATTTGTTTTAAATGAGC-AGATGG-ACCAGTCTTAAGACAAGCTGC  48
      ||||| |||||| |||||||| |||||| || |||  |||||||||||||
seq2  AAAGA-TTGTTTCAAATGAGCGAGATGGAACAAGTTCTAAGACAAGCTGC  49

seq1  --TCTCTTAAT-AAACATGTGTGGTACTTTATCAGCAAAGGAGCCTATTT  95
         |||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTTAATAAAACATGTGTGGTACTTTATCAGCAAAGGAGCCTATTT  99

seq1  TGACATTTCTTGGAGATGATTTGTACAGGCTATCGCCATCA-CACCTGGT  144
      ||||||||| ||||||||||||||||||||||||||||||| ||||| ||
seq2  TGACATTTC-TGGAGATGATTTGTACAGGCTATCGCCATCACCACCT-GT  147

seq1  GCAGGGACAAT-AAATGTGCACTTAATAGTCAAGCCGTGTGCGGACACCT  193
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGACAATAAAATGTGCACTTAATAGTCAAGCCGTGTGCGGACACCT  197

seq1  T-CCATTATAACTTCATTATGTCAGATACAATCATCCATTACCGAATGTC  242
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTATAACTTCATTATGTCAGATACAATCATCCATTACCGAATGTC  247

seq1  AGACATTTAATTTATGATCAGTTGCCCTCTGGAATTAGTGGCCATACAAA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTTAATTTATGATCAGTTGCCCTCTGGAATTAGTGGCCATACAAA  297

seq1  TGAAGAGTCCATTCAAATCAGCTTTACTGGTTCTCCTTCTCCCCTAAACA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGTCCATTCAAATCAGCTTTACTGGTTCTCCTTCTCCCCTAAACA  347

seq1  GTCAGCACGTAAAAGCTGAAACTGGGAAACCTTTAGAATTCTAGAATATA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCACGTAAAAGCTGAAACTGGGAAACCTTTAGAATTCTAGAATATA  397

seq1  AAACATTGTCTATGTGTGAAATTTCAAAAGCGGCTAACATCTGGGTCACA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTGTCTATGTGTGAAATTTCAAAAGCGGCTAACATCTGGGTCACA  447

seq1  TCTAATAAAGAACCGCATATTCGGAGATGCTAAATAACACCCATACTCTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATAAAGAACCGCATATTCGGAGATGCTAAATAACACCCATACTCTT  497

seq1  GGAAGCCGTACGTATAACTCATTTGCTTGCTTAGTGAGACCCAGGTTTGC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCGTACGTATAACTCATTTGCTTGCTTAGTGAGACCCAGGTTTGC  547

seq1  TTATGGATTAGTAATCGTGCTTCTGGGAGGAAAACAAGACAAAAAATTCT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGATTAGTAATCGTGCTTCTGGGAGGAAAACAAGACAAAAAATTCT  597

seq1  CCTTTGAGAATCTAGCGATCTAGCAGCAGATGGCATGTTACTAGTAGTGA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGAGAATCTAGCGATCTAGCAGCAGATGGCATGTTACTAGTAGTGA  647

seq1  CACCATGCAGTCGAGTTCATAGCAGAATAAGGGAAGAGACCTGGAGAGAC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGCAGTCGAGTTCATAGCAGAATAAGGGAAGAGACCTGGAGAGAC  697

seq1  GGCTCATCAGTTCAGAGTGGGTGACCTAGGTTCAGTTCCCTTACCTGGAT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCATCAGTTCAGAGTGGGTGACCTAGGTTCAGTTCCCTTACCTGGAT  747

seq1  GACAATTCACAACCATCCACGAGATGAGACTCTCTCTGGTTTCCCCAGGC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATTCACAACCATCCACGAGATGAGACTCTCTCTGGTTTCCCCAGGC  797

seq1  ACTAGGCATGTACAAGACGTACATACGAGCATGCAGGCGAACCGTTCATA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGCATGTACAAGACGTACATACGAGCATGCAGGCGAACCGTTCATA  847

seq1  CACTTAAAAATTAAATCTTTTCCAAAACCGTATGAGGGTAATTTCCTATG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAAAAATTAAATCTTTTCCAAAACCGTATGAGGGTAATTTCCTATG  897

seq1  ATGTATTTCTTAACATAGCTAAAACCAGGGTCTTCTCAGCTGGACAGCAT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTCTTAACATAGCTAAAACCAGGGTCTTCTCAGCTGGACAGCAT  947

seq1  AAACAAGTATTTGGCTAACAGAGACAACATCAATAGGCACTCTGTCAAAG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGTATTTGGCTAACAGAGACAACATCAATAGGCACTCTGTCAAAG  997

seq1  AGGTGGTGCAAAAAGAAGGTTGGATTTGTGAAAGAGACGCTGAGGGAAAT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGTGCAAAAAGAAGGTTGGATTTGTGAAAGAGACGCTGAGGGAAAT  1047

seq1  AAAAAGAGGGTGAGGAACTAGTGCTTTGTGGACTTTAAGAATTGATGGTC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAGGGTGAGGAACTAGTGCTTTGTGGACTTTAAGAATTGATGGTC  1097

seq1  CCTGCTGACATCCGAGGAACCTTGTAGCCCCTTTCTATAGGCAGAGGAGA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGACATCCGAGGAACCTTGTAGCCCCTTTCTATAGGCAGAGGAGA  1147

seq1  ATTC  1146
      ||||
seq2  ATTC  1151


seq1: chr5_81875323_81876488
seq2: B6Ng01-270A05.g_63_1239

seq1  GAATTCTGGGTGGAATGAGATTGGCCCATCCAAGGCCATGTCAGCTATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGTGGAATGAGATTGGCCCATCCAAGGCCATGTCAGCTATAA  50

seq1  TTATAGAATTCAATTCTTTGTAAACTGTATTTGTTAGTGTGTCTATGGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAATTCAATTCTTTGTAAACTGTATTTGTTAGTGTGTCTATGGCG  100

seq1  TGTGTGTGTGTGTTGCATCTAGTGGTTTGGGTATGTAGACCAAAGGACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTTGCATCTAGTGGTTTGGGTATGTAGACCAAAGGACAA  150

seq1  CATTTGAGTATTAGCTCTTGCCTTCACTCCTGTGGGGTATGAGGATCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAGTATTAGCTCTTGCCTTCACTCCTGTGGGGTATGAGGATCTAA  200

seq1  CACTACGGACTTTGTAGCATTCTCTTTCTTTTATGTTCTATGCCATTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACGGACTTTGTAGCATTCTCTTTCTTTTATGTTCTATGCCATTCTA  250

seq1  ATGCATGGCTGAAAACACACAGTCATGCCATCTGGTACACTCTAAAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGGCTGAAAACACACAGTCATGCCATCTGGTACACTCTAAAGAAA  300

seq1  ACCTAGTAGTTAATTGTTGTATATCTAGGTATACAGAAAGAATAGCAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGTAGTTAATTGTTGTATATCTAGGTATACAGAAAGAATAGCAAGG  350

seq1  TGACAGTGACTTTAAAATGTAGCTATTGGGTGGACATGGTTGGCAGACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTGACTTTAAAATGTAGCTATTGGGTGGACATGGTTGGCAGACAT  400

seq1  TTAATACCAGCATTTGGAAGGCAGAGGCAGGAGAATCTCTGTGAATTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATACCAGCATTTGGAAGGCAGAGGCAGGAGAATCTCTGTGAATTGGA  450

seq1  GGCCAGCATAACCTAGATAATGAACTCCAGGACAAATCGAGAGATACCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCATAACCTAGATAATGAACTCCAGGACAAATCGAGAGATACCAT  500

seq1  CTCAAAATTAAAATAAAAAGTAAAAGATAAAAAAAAGAAAACAAGGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAATTAAAATAAAAAGTAAAAGATAAAAAAAAGAAAACAAGGAAAA  550

seq1  AGAAATTATTCCTTTGCATGCTTTTCTTTTTTATTTTATTTTTGTTATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTATTCCTTTGCATGCTTTTCTTTTTTATTTTATTTTTGTTATTA  600

seq1  ATCATTTTATTCATTTACATTTCAAATGATATCCCCCTTCCCAGTTACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTTATTCATTTACATTTCAAATGATATCCCCCTTCCCAGTTACCC  650

seq1  CTCCACCAATCCCCCATCTCATTGCCCTTCTCCTCCCTCCTCTTGGCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCAATCCCCCATCTCATTGCCCTTCTCCTCCCTCCTCTTGGCCTC  700

seq1  TATTAGGGTGCTCCTCCACCCATTCACCCACTCCCAACTTACCCCTCTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGGGTGCTCCTCCACCCATTCACCCACTCCCAACTTACCCCTCTAG  750

seq1  CATCTCCCTACTCTGGGGCATCAAGTCTCCCTCCTTTCCCATTGATGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCCTACTCTGGGGCATCAAGTCTCCCTCCTTTCCCATTGATGTCA  800

seq1  GATAAGGCCCTTCTCTGCTACCTATGTATCTGGAGAGACCATCTGTATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGGCCCTTCTCTGCTACCTATGTATCTGGAGAGACCATCTGTATAC  850

seq1  TTCTTTTCTAAATTAGCCCAGACCCCTTCCTTTCTTCTGTTTGGTCTCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCTAAATTAGCCCAGACCCCTTCCTTTCTTCTGTTTGGTCTCCC  900

seq1  AACTCCCCCCCCCCAATTCTTCCCCCTGCTCTTCCTCCTCCTGTTCCTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCCCCCCCCCAATTCTTCCCCCTGCTCTTCCTCCTCCTGTTCCTCT  950

seq1  TCTTCCTCCCCCTCCTTTATATCTTGCTGTCAGCAACGCTAATTTTGCAA  1000
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCTTCCTCCCCCTCCTTTATATC-TGCTGTCAGCAACGCTAATTTTGCAA  999

seq1  CTATCAGCTTATGAGTACAT-ACT-GTGTG--ATTTTTCTGTCCATTCAT  1046
      |||||||||||||||||||| ||| |||||   ||||||||| |||||||
seq2  CTATCAGCTTATGAGTACATAACTGGTGTGGATTTTTTCTGT-CATTCAT  1048

seq1  -ACAGTAAGCTAG-AAAATGTAGGAACTG-TCA-GTGTCCTGGAGA--TG  1090
       |||||||||||| |||||||| |||||| ||| |||||||||| |   |
seq2  AACAGTAAGCTAGAAAAATGTAAGAACTGTTCAGGTGTCCTGGAAAATGG  1098

seq1  AGTTGTTTGGGGCCCAGGGGAG-AGT-AAATAACTTGAGATTCT-GATAA  1137
      ||||| |||||||   |||||| ||| ||||||| |  || ||| |||| 
seq2  AGTTG-TTGGGGCTACGGGGAGAAGTAAAATAACCTTGGAATCTGGATAC  1147

seq1  CTGGCAATGACCTATG--ATGCATTCTCAGA  1166
      || ||| |||||||||   ||||||||||||
seq2  CT-GCAGTGACCTATGGAGTGCATTCTCAGA  1177


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