BAC Information

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BAC

Clone NameB6Ng01-271A14
Chromosome5 (Build37)
Map Location 124,163,137 - 124,164,247
singlet/doubletsinglet
Overlap geneZcchc8
Upstream geneP2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a, Mlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1
Downstream geneRsrc2, Kntc1, LOC100040005, Gpr109a, Gpr81, Denr, Ccdc62, Hip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1, Sbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271A14.bB6Ng01-271A14.g
ACCGA073223GA073224
length1,1171,032
definitionB6Ng01-271A14.b B6Ng01-271A14.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccctgaagctggagttatatgtggttggaaggtgcccagtgttaa
gcgcagggaatcaaactcagatcttctacaccagtggcacatgctcaact
gctaagctctctctgggggaggaggaagaggaggatgatgacgacgacag
tgatataaccaacaactcacacatgctaggtaagcactatgccactaggc
tgtaagtccagcttagcctttttcctttctgccttgtctccccatgctaa
gattacaagtctaagccaccaaggccagctcccagcctaggctctctgac
tctgagatgaaaagcaccaccttgcattcaagtccaccactaatcctagt
tagccagggacactatgaggcatgatgtctaacaactataatcaaatctg
ctgggatccaacagccctctctggccttttcatgagattcgtggctctcc
atcatctttgcagccccatgtctgtaaaactggggtacattatcacaggg
catattctataagcagaaaaaccagtcatcctttgagactgtgctactaa
taaagtctgcaaaggagctgaaaggcctatataggttcttcctgttaagc
tttgactcttactcgctaattaagcttactgacattttgaatttctaatg
tgccacgttatctctgcttcctctgtatgtaagttttacaagtttagtca
aaggtttcaagataaacatgaagaggttggtcaggaccaacacaaactct
tgcaaaccaagtgtactgtatcctcaggacagagcgcagcagtcactttg
agaggaagtgacattagtggatgacagcaacacttctgctttacagaaat
gtgatgacacacctattgttacgccacccaactgaagacacacaggaacc
atacatctgcagagctcagaataatagtccaaacttacactaaaaagctt
ccttgttgtttttaacggcacatgaattcttccactttatggtcctcttt
caacataacactggaacgggctaagaccaagaaaacaggcaatacggcaa
gtcaacagggatgaataccttttgaccttcaaacttaggaacctacacaa
cctgaatatatagtgag
gaattctttggaaagtcggttggatggcattttgctggggcaaacacgtg
aaggaatgttttgttaaggtgtgaaaggctcaggcagactcgtgaaggaa
catctggctgaagcagacacaggagagaggacgttctgctaaagcaagca
catgaaaggacatgtgatgaaggattctttgcttacgacacgaatgtatt
ggtctgccttacactgagtacttgagctgcgtttgttgagactccataga
aacttcaccaaaaaactcctggtggtgtgctgcagtttgttgccacttct
gaggacttgggctgattttatgaacatactgaggtgagacctgtgctgag
agtaaaacacgtggaggacacgagatgtttggagggtataactaggactc
cacagagtgacagagacagagcttggcttgctggtacagctagatgtgca
aggcttgtgggtctcgagtcttcgctgatcttctcttctctgagagaggc
acagccaagcacttctcctggtatttctgtcggtccctcctgctgattca
agctgaggctgaggcctggctgtctctgctaggtcctgtcactgctgttg
ttaacccgactctaccaagctagactgctggtgtatcctcgaggtgtttg
tgagtggatcgagctgctgctgctaacctgtgaactgaactgccgatttc
cagacaatacagatggcagttgctccaaagaacctttttaaacaggtcca
cttcccctgtttcatttcttttccactacctctggtgggtggtgggctac
aaggaaggttaaagcgtttaagaatcatcattaaaagtaagatttggggg
ctggaaagatggctcagtggttaagagcactgacggctcttccgaaggcc
cagagttcaatcccagaaaccacacagtggctcacacatcagtaatgaga
tctgatgcctcttctggggtgtcaccagcacacacatacatcagcacaca
catacaccagctcacacatacaccaacacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_124163137_124164247
seq2: B6Ng01-271A14.b_46_1162

seq1  GAATTCCCTGAAGCTGGAGTTATATGTGGTTGGAAGGTGCCCAGTGTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGAAGCTGGAGTTATATGTGGTTGGAAGGTGCCCAGTGTTAA  50

seq1  GCGCAGGGAATCAAACTCAGATCTTCTACACCAGTGGCACATGCTCAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCAGGGAATCAAACTCAGATCTTCTACACCAGTGGCACATGCTCAACT  100

seq1  GCTAAGCTCTCTCTGGGGGAGGAGGAAGAGGAGGATGATGACGACGACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGCTCTCTCTGGGGGAGGAGGAAGAGGAGGATGATGACGACGACAG  150

seq1  TGATATAACCAACAACTCACACATGCTAGGTAAGCACTATGCCACTAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATAACCAACAACTCACACATGCTAGGTAAGCACTATGCCACTAGGC  200

seq1  TGTAAGTCCAGCTTAGCCTTTTTCCTTTCTGCCTTGTCTCCCCATGCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTCCAGCTTAGCCTTTTTCCTTTCTGCCTTGTCTCCCCATGCTAA  250

seq1  GATTACAAGTCTAAGCCACCAAGGCCAGCTCCCAGCCTAGGCTCTCTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACAAGTCTAAGCCACCAAGGCCAGCTCCCAGCCTAGGCTCTCTGAC  300

seq1  TCTGAGATGAAAAGCACCACCTTGCATTCAAGTCCACCACTAATCCTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGATGAAAAGCACCACCTTGCATTCAAGTCCACCACTAATCCTAGT  350

seq1  TAGCCAGGGACACTATGAGGCATGATGTCTAACAACTATAATCAAATCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGGGACACTATGAGGCATGATGTCTAACAACTATAATCAAATCTG  400

seq1  CTGGGATCCAACAGCCCTCTCTGGCCTTTTCATGAGATTCGTGGCTCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATCCAACAGCCCTCTCTGGCCTTTTCATGAGATTCGTGGCTCTCC  450

seq1  ATCATCTTTGCAGCCCCATGTCTGTAAAACTGGGGTACATTATCACAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTTTGCAGCCCCATGTCTGTAAAACTGGGGTACATTATCACAGGG  500

seq1  CATATTCTATAAGCAGAAAAACCAGTCATCCTTTGAGACTGTGCTACTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTCTATAAGCAGAAAAACCAGTCATCCTTTGAGACTGTGCTACTAA  550

seq1  TAAAGTCTGCAAAGGAGCTGAAAGGCCTATATAGGTTCTTCCTGTTAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCTGCAAAGGAGCTGAAAGGCCTATATAGGTTCTTCCTGTTAAGC  600

seq1  TTTGACTCTTACTCGCTAATTAAGCTTACTGACATTTTGAATTTCTAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTCTTACTCGCTAATTAAGCTTACTGACATTTTGAATTTCTAATG  650

seq1  TGCCACGTTATCTCTGCTTCCTCTGTATGTAAGTTTTACAAGTTTAGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACGTTATCTCTGCTTCCTCTGTATGTAAGTTTTACAAGTTTAGTCA  700

seq1  AAGGTTTCAAGATAAACATGAAGAGGTTGGTCAGGACCAACACAAACTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTCAAGATAAACATGAAGAGGTTGGTCAGGACCAACACAAACTCT  750

seq1  TGCAAACCAAGTGTACTGTATCCTCAGGACAGAGCGCAGCAGTCACTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACCAAGTGTACTGTATCCTCAGGACAGAGCGCAGCAGTCACTTTG  800

seq1  AGAGGAAGTGACATTAGTGGATGACAGCAACACTTCTGCTTTACAGAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAGTGACATTAGTGGATGACAGCAACACTTCTGCTTTACAGAAAT  850

seq1  GTGATGACACACCTATTGTTACGCCACCCAACTGAAGACACACAGGAACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGACACACCTATTGTTACGCCACCCAACTGAAGACACACAGGAACC  900

seq1  ATACATCTGCAGAGCTCAGAATAATAGTCCAAACTTACACT-AAAAGCTT  949
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATACATCTGCAGAGCTCAGAATAATAGTCCAAACTTACACTAAAAAGCTT  950

seq1  CCTTGTTGTTTTTAACGGCACATG-ATTCTTCCACTTTATGGTCCTCTTC  998
      |||||||||||||||||||||||| |||||||||||||||||||||||| 
seq2  CCTTGTTGTTTTTAACGGCACATGAATTCTTCCACTTTATGGTCCTCTTT  1000

seq1  CAACATAACACTGGA--CGGCTAAGACCAAG-AAACAGGCATTACGGCAA  1045
      |||||||||||||||   ||||||||||||| ||||||||| ||||||||
seq2  CAACATAACACTGGAACGGGCTAAGACCAAGAAAACAGGCAATACGGCAA  1050

seq1  GTCACAAGGGAATGAATACCTTTTGACTTTCAAACTTTAGGAACCTACAC  1095
      ||||  |||| |||||||||||||||| ||||||| ||||||||||||||
seq2  GTCAACAGGG-ATGAATACCTTTTGACCTTCAAAC-TTAGGAACCTACAC  1098

seq1  A--CTGAATATA-AGTGAG  1111
      |  ||||||||| ||||||
seq2  AACCTGAATATATAGTGAG  1117