BAC Information

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BAC

Clone NameB6Ng01-272E11
Chromosome5 (Build37)
Map Location 14,045,835 - 14,058,036
singlet/doubletdoublet
Overlap geneSema3e, LOC100042957
Upstream geneLOC625989, LOC670717, Sema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148
Downstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272E11.bB6Ng01-272E11.g
ACCGA074145GA074146
length1,1231,123
definitionB6Ng01-272E11.b B6Ng01-272E11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,045,835 - 14,047,089)(14,056,904 - 14,058,036)
sequence
gaattccagactttactctgtctgagttcccaatcaatatctttggcaag
agctagtacgtaaagcaagcttgtgaaagccatcagtggtttacaatttc
ctctttcataaaatcatttagttactaatatattcaaattataaattcca
taaatgaaatgggagctatttatactctttgacttgattatggaagaata
ttttgagggttagctttatcactctacagttagctgctttagagcttata
ttaaccttcatgtatgaaatggaaataagcattctcaaaggagggctatt
aaatttactcttgtagagtgagcattatacaggagcctaaagcattaaga
atatgaagggagattataatgaccaccaaatattttaaattctaaaatat
atttacacattgtgttttttattgaaaagaatgattcttaagatgttaaa
attttagccacattaattattaaaacagacaaagtatattattggttaga
gtctttgaagactatttcttggcatgggtgggatctcttgcccaaccaag
agggagattctaaatctgagtttctatcatttcaataattatagtcagct
ggggtgaattctacctgctaattgtatatgagtctatttccttattttgt
gagaaatgggttaaatgtatttaaaaaatgtcaaaatggggtgtctatta
tgatgactaattatagaagtctttgattattacagtgatctagccaaggt
aaaccatcattagatatctttttaaaactatgtgtacttttcttcttgcc
tttcctatttttttttataaggaaactcttcatcaagagaattttatgca
ggtcatgcagtatttgacctaatgttttccaaggcagtatttaaccccac
aggacagaagtgtctttctctttttctttgtcaggctgatcttctagtct
acctttaagcaggtttcttagaagctcttctgtgataaaatggttacatt
tagtgctacatgtagtaggtcagtttgctgctgcttgcatcctaatagct
aaaactgatccctaagatgtctgctcagatgtgggtggcaccacacttat
ccagcactcgggaagcagatgca

cggaattttatgacatttttcttcttgtgttatatacctttctatccata
tgacctgaagtcatatacacaattaaatggtgtataggaaacaatgtatt
ttttccttataaacagattctcaaaaaaaaaaaaattacccaaggtattt
ctgagttgaattttcctaagtgttttcaggtacctttcattagtcttcag
aaactaagtgtcaaatatgaaaactaaaaatagtttaagttaaaagaagt
gaaatcagataaggctgtatggtttgaacaccttgatgaaatattaagga
cacattttaattaaacacagaatgatgtcattgtaagttgctaatgctta
atattttccacttctggccctttcctaaaacaggtaacacaatgttcctt
tcattaggaagctatggaactagttatctcacctagagggtaaagtgttt
tgcggttaagcagaagtacaaaagttactatgtgaatatgagacacagga
gagaagccatttaagcattctaaactgacagatgccaaaatagttcattt
atactgagtattcaaatttaagtagcctaactttgctgccaacttggcat
agagcaattaaatggttacatggttgttcctttatgaaagtaattgaatt
taagttgtgttttatttttaacataaacatgaatagttctacccaagttg
aatcaaattaaaataagtatacattctggctagtgtttgcttgcgactta
gcaatgtgtgagtacagcattagtcattttcacacaaacaaataattcta
tgaaaagtcggaattactgaataagacaaacctaataattcaaacttttg
cttaaagttctatgtctacgacccttcaactaacatttcacagcctgaat
tgcatgatatcttgtcagtgttagtggaaaataagaaacgattagtataa
caatttttaattgtctctacatttgaggagtaaacccatgtatatataac
agacattttcaaacaacaatggacatgttacaggtagtttatagatgctg
atatcatgatagctcagtttctatcaatcttcctgtgattcatcataact
cattgaaagtcctgatgcgctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_14045835_14047089
seq2: B6Ng01-272E11.b_50_1172

seq1  GAATTCCAGACTTTACTCTGTCTGAGTTCCCAATCAATATCTTTGGCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACTTTACTCTGTCTGAGTTCCCAATCAATATCTTTGGCAAG  50

seq1  AGCTAGTACGTAAAGCAAGCTTGTGAAAGCCATCAGTGGTTTACAATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGTACGTAAAGCAAGCTTGTGAAAGCCATCAGTGGTTTACAATTTC  100

seq1  CTCTTTCATAAAATCATTTAGTTACTAATATATTCAAATTATAAATTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCATAAAATCATTTAGTTACTAATATATTCAAATTATAAATTCCA  150

seq1  TAAATGAAATGGGAGCTATTTATACTCTTTGACTTGATTATGGAAGAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAAATGGGAGCTATTTATACTCTTTGACTTGATTATGGAAGAATA  200

seq1  TTTTGAGGGTTAGCTTTATCACTCTACAGTTAGCTGCTTTAGAGCTTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGGGTTAGCTTTATCACTCTACAGTTAGCTGCTTTAGAGCTTATA  250

seq1  TTAACCTTCATGTATGAAATGGAAATAAGCATTCTCAAAGGAGGGCTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCTTCATGTATGAAATGGAAATAAGCATTCTCAAAGGAGGGCTATT  300

seq1  AAATTTACTCTTGTAGAGTGAGCATTATACAGGAGCCTAAAGCATTAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTACTCTTGTAGAGTGAGCATTATACAGGAGCCTAAAGCATTAAGA  350

seq1  ATATGAAGGGAGATTATAATGACCACCAAATATTTTAAATTCTAAAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAGGGAGATTATAATGACCACCAAATATTTTAAATTCTAAAATAT  400

seq1  ATTTACACATTGTGTTTTTTATTGAAAAGAATGATTCTTAAGATGTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACACATTGTGTTTTTTATTGAAAAGAATGATTCTTAAGATGTTAAA  450

seq1  ATTTTAGCCACATTAATTATTAAAACAGACAAAGTATATTATTGGTTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGCCACATTAATTATTAAAACAGACAAAGTATATTATTGGTTAGA  500

seq1  GTCTTTGAAGACTATTTCTTGGCATGGGTGGGATCTCTTGCCCAACCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGAAGACTATTTCTTGGCATGGGTGGGATCTCTTGCCCAACCAAG  550

seq1  AGGGAGATTCTAAATCTGAGTTTCTATCATTTCAATAATTATAGTCAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGATTCTAAATCTGAGTTTCTATCATTTCAATAATTATAGTCAGCT  600

seq1  GGGGTGAATTCTACCTGCTAATTGTATATGAGTCTATTTCCTTATTTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGAATTCTACCTGCTAATTGTATATGAGTCTATTTCCTTATTTTGT  650

seq1  GAGAAATGGGTTAAATGTATTTAAAAAATGTCAAAATGGGGTGTCTATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATGGGTTAAATGTATTTAAAAAATGTCAAAATGGGGTGTCTATTA  700

seq1  TGATGACTAATTATAGAAGTCTTTGATTATTACAGTGATCTAGCCAAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACTAATTATAGAAGTCTTTGATTATTACAGTGATCTAGCCAAGGT  750

seq1  AAACCATCATTAGATATCTTTTTAAAACTATGTGTACTTTTCTTCTTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATCATTAGATATCTTTTTAAAACTATGTGTACTTTTCTTCTTGCC  800

seq1  TTTCCTATTTTTTTTTATAAGGAAACTCTTCATCAAGAGAATTTTATGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTATTTTTTTTTATAAGGAAACTCTTCATCAAGAGAATTTTATGCA  850

seq1  GGTCATGCAGTATTTGACCTAATGTTTTCCAAGGCAGTATTTAACCCCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATGCAGTATTTGACCTAATGTTTTCCAAGGCAGTATTTAACCCCAC  900

seq1  AGGACAGAAGTGTCTTTCTCTTTTTCTTTGTCAGGCTGATCTTCTAGTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGAAGTGTCTTTCTCTTTTTCTTTGTCAGGCTGATCTTCTAGTCT  950

seq1  ACCTTTAAGCAGGGTTTCTTAGAAGCTCTTCTGGTGATAAAAATGGTTAC  1000
      ||||||||||| |||||||||||||||||||| ||||| |||||||||||
seq2  ACCTTTAAGCA-GGTTTCTTAGAAGCTCTTCT-GTGAT-AAAATGGTTAC  997

seq1  ATTTAGTGCTACATGTAGTAGGTCAGTTTGCTGCTGCTTGCATCCT-ATA  1049
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATTTAGTGCTACATGTAGTAGGTCAGTTTGCTGCTGCTTGCATCCTAATA  1047

seq1  GCTAAAACTGATCCCTTAAGATGTGGTTGCTCAGATGT-GGTGGCACACA  1098
      ||||||||||||||| ||||||||   ||||||||||| |||||||| ||
seq2  GCTAAAACTGATCCC-TAAGATGT--CTGCTCAGATGTGGGTGGCAC-CA  1093

seq1  CCTTTAATCCCAGCACTCGGGAGGCAGATGCAGGTGAATTTCTGAGTTCG  1148
      |  |||   ||||||||||||| |||||||||                  
seq2  CACTTA--TCCAGCACTCGGGAAGCAGATGCA------------------  1123

seq1  AGGTCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGACTACACAG  1198
                                                        
seq2  --------------------------------------------------  1123

seq1  AGAAACCCTGTCTCGGAAAAAAAAAAAAGATGTGGTTGTTCCTGAAGAGC  1248
                                                        
seq2  --------------------------------------------------  1123

seq1  AGATGCA  1255
             
seq2  -------  1123


seq1: chr5_14056904_14058036
seq2: B6Ng01-272E11.g_66_1185 (reverse)

seq1  AGAGCCGCATCAAAGGGGTTTTCAAATGAGTGTATGATGAAATCACA-GA  49
      |||| |||||||   ||  |||| ||||||| ||||||| ||||||| ||
seq2  AGAG-CGCATCA---GGACTTTC-AATGAGT-TATGATG-AATCACAGGA  43

seq1  AGATTGATAGGAAACTGAGCCTTATCATGATATCAAGCATTCTATAAACT  99
      ||||||||| ||||||||||  |||||||||||| |||| ||||||||| 
seq2  AGATTGATA-GAAACTGAGC--TATCATGATATC-AGCA-TCTATAAAC-  87

seq1  TACCTTGTAACATGTCCATTGTTGTTTTGAAAATGTCTGTTATATATACA  149
      |||| ||||||||||||||||||| |||||||||||||||||||||||||
seq2  TACC-TGTAACATGTCCATTGTTG-TTTGAAAATGTCTGTTATATATACA  135

seq1  TGGGTTTACTCCTCAAATGTAGAGACAATTAAAAATTGTTATACTAATCG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTACTCCTCAAATGTAGAGACAATTAAAAATTGTTATACTAATCG  185

seq1  TTTCTTA-TTTCCACTAACACTGACAAGATATCATGCAATTCAGGCTGTG  248
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTATTTTCCACTAACACTGACAAGATATCATGCAATTCAGGCTGTG  235

seq1  AAATGTTAGTTGAAGGGTCGTAGACATAGAACTTTAAGCAAAAGTTTGAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTAGTTGAAGGGTCGTAGACATAGAACTTTAAGCAAAAGTTTGAA  285

seq1  TTATTAGGTTTGTCTTATTCAGTAATTCCGACTTTTCATAGAATTATTTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGGTTTGTCTTATTCAGTAATTCCGACTTTTCATAGAATTATTTG  335

seq1  TTTGTGTGAAAATGACTAATGCTGTACTCACACATTGCTAAGTCGCAAGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTGAAAATGACTAATGCTGTACTCACACATTGCTAAGTCGCAAGC  385

seq1  AAACACTAGCCAGAATGTATACTTATTTTAATTTGATTCAACTTGGGTAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTAGCCAGAATGTATACTTATTTTAATTTGATTCAACTTGGGTAG  435

seq1  AACTATTCATGTTTATGTTAAAAATAAAACACAACTTAAATTCAATTACT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTCATGTTTATGTTAAAAATAAAACACAACTTAAATTCAATTACT  485

seq1  TTCATAAAGGAACAACCATGTAACCATTTAATTGCTCTATGCCAAGTTGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAAGGAACAACCATGTAACCATTTAATTGCTCTATGCCAAGTTGG  535

seq1  CAGCAAAGTTAGGCTACTTAAATTTGAATACTCAGTATAAATGAACTATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAGTTAGGCTACTTAAATTTGAATACTCAGTATAAATGAACTATT  585

seq1  TTGGCATCTGTCAGTTTAGAATGCTTAAATGGCTTCTCTCCTGTGTCTCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATCTGTCAGTTTAGAATGCTTAAATGGCTTCTCTCCTGTGTCTCA  635

seq1  TATTCACATAGTAACTTTTGTACTTCTGCTTAACCGCAAAACACTTTACC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCACATAGTAACTTTTGTACTTCTGCTTAACCGCAAAACACTTTACC  685

seq1  CTCTAGGTGAGATAACTAGTTCCATAGCTTCCTAATGAAAGGAACATTGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGTGAGATAACTAGTTCCATAGCTTCCTAATGAAAGGAACATTGT  735

seq1  GTTACCTGTTTTAGGAAAGGGCCAGAAGTGGAAAATATTAAGCATTAGCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCTGTTTTAGGAAAGGGCCAGAAGTGGAAAATATTAAGCATTAGCA  785

seq1  ACTTACAATGACATCATTCTGTGTTTAATTAAAATGTGTCCTTAATATTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACAATGACATCATTCTGTGTTTAATTAAAATGTGTCCTTAATATTT  835

seq1  CATCAAGGTGTTCAAACCATACAGCCTTATCTGATTTCACTTCTTTTAAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAGGTGTTCAAACCATACAGCCTTATCTGATTTCACTTCTTTTAAC  885

seq1  TTAAACTATTTTTAGTTTTCATATTTGACACTTAGTTTCTGAAGACTAAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTATTTTTAGTTTTCATATTTGACACTTAGTTTCTGAAGACTAAT  935

seq1  GAAAGGTACCTGAAAACACTTAGGAAAATTCAACTCAGAAATACCTTGGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTACCTGAAAACACTTAGGAAAATTCAACTCAGAAATACCTTGGG  985

seq1  TAATTTTTTTTTTTTTGAGAATCTGTTTATAAGGAAAAAATACATTGTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTTTTTTTTTGAGAATCTGTTTATAAGGAAAAAATACATTGTTT  1035

seq1  CCTATACACCATTTAATTGTGTATATGACTTCAGGTCATATGGATAGAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATACACCATTTAATTGTGTATATGACTTCAGGTCATATGGATAGAAA  1085

seq1  GGTATATAACACAAGAAGAAAAATGTCATAAAATT  1133
      |||||||||||||||||||||||||||||||||||
seq2  GGTATATAACACAAGAAGAAAAATGTCATAAAATT  1120


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