BAC Information

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BAC

Clone NameB6Ng01-272I21
Chromosome5 (Build37)
Map Location 81,964,495 - 82,141,909
singlet/doubletdoublet
Overlap geneLphn3
Upstream geneLOC100039506, LOC100039384
Downstream geneEG433912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272I21.bB6Ng01-272I21.g
ACCGA074352GA074353
length1,1621,081
definitionB6Ng01-272I21.b B6Ng01-272I21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,140,754 - 82,141,909)(81,964,495 - 81,965,578)
sequence
ggaattcttgccacgagtcagagtcctgagcaattttgactttgaaacac
tgaactaaacacaagccatgggctccatcaagtgactttttcaggcatga
gaaaagcaaagatgaagaataaaatgaattaaagagccagaacagattaa
aatatgtaatccatgagcagttcccctggaggggggggggagcaaaaccc
aatatttctactggaagaatgtggagattttatatattaattaaacaata
gatgatgggtttgctttatcataagtgtctttcagcagacgaaaatttaa
catatttaccaaacgatttaggaatgaatgtggtattatgatgtcatgca
tttacttgcaaaaatctaataacacatcaaaaaaaaaaaagaaacatgca
tatacaccagggtagctatgggacaaattttaaatttaattagagaaaaa
catcattatttatcaacttttctatttaaaaatgtctataaaataatgga
gtgacaataataaaaaaataaataaatgttcttttctcatcctaattcta
aacctgagaatgtgtcctgaattacaaggagagacctagacatccaaagc
tccatctctaaaggaaattatttcaaaaagatatagctcctgcatgttca
gggatgctgataaactgcgtgccttttctccattgccagcacagggtatt
tccaaacatagtggctctcctctgctacagcacaagaatacagaacaatg
tttcttagacatcagattcctgactaatcttgatacataggtaagacact
aattatgaaccaaacaacagtgtgcagtgtgacaaaggtaaatagaaaac
acagtgcaaaattttgttcagtaagaaaaatcgaacatcattctttttgt
tttaaaagattgcccatcatatatccagaagatttcccaccggtaagaaa
ggacacatgttccactatgtcatagcagccttacttataggagccaggaa
gctggaaagaacccagatgccccctcaacagaaggaatggatacaaaaat
ggtggtacatttaacaccaatggaagtacttactcaggcttataaaggga
aatgaatttatgaatcctagcaatggctgacctggagggccatcatccgt
gagtgaggtaac

gaattcaatgtgcctcataaggtaggggccaaagatgcacagacacgacc
atgcctggtcctgatgtattaaccttgagggagccaggtgtctattgtta
ctgagagagtcttaaacatcccccagaatttagttggcaacactcagatg
catttctttctttcttccattaacaaatctgtttgccagtcagggattta
aaaaaaattattattcctcagatactagccaggaggtcacattgccctca
caaggggagggcacagtagatgagttgttacagctcgttgtccttcatac
ttcctcctctttaggaggttacctttgtggtgtcctttactaaggtattc
aaaaggcagagggattttttgcttgtaatacttcctgaaaagaccaaatt
ggttggtttttaagccaattaatctaagaagagaacacctgtctctcctt
aaataatgagtccgatgttttcccatgaatacattttgggaaataatgct
gatcagtggagccataattcatttctagtcatctatttcttccaatttga
aacaaataaaagcttcctggtcgcgaggctcctgggaagaaaaaacaagc
tgattgttctcttgcctgtggagatattctccgtgaagaggagctcagat
gtacttggcagtgattgacttgtttaaagacgagggtagcagtgttagaa
gaggcacttgttcatttttaagtcgcggagcctaaatgaggtagactgtt
agaaggctccttcagtcttctgtcgtgtttgcttgtgaactaatgaccat
tctgggcgtagatattaactgcaagttgttctgaagaaactcactgctgt
tgcacgcatatgaataacgccttatctctcaactgcctttcacgctaaag
cagctcagaaattcctatgcaatgaattattttacatgaatagttttatc
tcggcctacagatgagaattggagaaacgattcacaggatatttctgtac
agtatagaaaaataatagctatttttcttttttaaaaatgaaataaaata
agtttttgtgccattacgtttagaagaacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_82140754_82141909
seq2: B6Ng01-272I21.b_49_1209 (reverse)

seq1  GTTACCTCACTCA-GGATGAT-GCCCTCCAGGTCCAACCATTTGCCTAGG  48
      ||||||||||||| ||||||| ||||||||||| || |||||   |||||
seq2  GTTACCTCACTCACGGATGATGGCCCTCCAGGT-CAGCCATT--GCTAGG  47

seq1  AATTTCATAAATTCA-TTCCTTTTAATAG-CTGAGT-AGTAC-TCCATT-  93
      |  |||||||||||| |||| ||||  || |||||| ||||| |||||| 
seq2  A--TTCATAAATTCATTTCCCTTTATAAGCCTGAGTAAGTACTTCCATTG  95

seq1  GTG-TAAATGTACCACATTTTTTGTATCCATTCC-TCTGTTGA-GGGGCA  140
      ||| ||||||||||||  |||||||||||||||| |||||||| ||||||
seq2  GTGTTAAATGTACCACCATTTTTGTATCCATTCCTTCTGTTGAGGGGGCA  145

seq1  TCTGGGTTCTTTCCAGCTT-CTGGCTCTTATAAGTAAGGCTGCTATGAAC  189
      ||||||||||||||||||| ||||||| ||||||||||||||||||| ||
seq2  TCTGGGTTCTTTCCAGCTTCCTGGCTCCTATAAGTAAGGCTGCTATG-AC  194

seq1  ATAGTGGAACATGTGTCC-TTCTTACCGGTTGGGAAATCTTCTGGATATA  238
      |||||||||||||||||| |||||||||| ||||||||||||||||||||
seq2  ATAGTGGAACATGTGTCCTTTCTTACCGG-TGGGAAATCTTCTGGATATA  243

seq1  TGATGGGCAATCTTTTAAAACAAAAAGAATGATGTTCGATTTTTCTTACT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGGCAATCTTTTAAAACAAAAAGAATGATGTTCGATTTTTCTTACT  293

seq1  GAACAAAATTTTGCACTGTGTTTTCTATTTACCTTTGTCACACTGCACAC  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAATTTTGCACTGTGTTTTCTATTTACCTTTGTCACACTGCACAC  343

seq1  TGTTGTTTGGTTCATAATTAGTGTCTTACCTATGTATCAAGATTAGTCAG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTTGGTTCATAATTAGTGTCTTACCTATGTATCAAGATTAGTCAG  393

seq1  GAATCTGATGTCTAAGAAACATTGTTCTGTATTCTTGTGCTGTAGCAGAG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGATGTCTAAGAAACATTGTTCTGTATTCTTGTGCTGTAGCAGAG  443

seq1  GAGAGCCACTATGTTTGGAAATACCCTGTGCTGGCAATGGAGAAAAGGCA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCCACTATGTTTGGAAATACCCTGTGCTGGCAATGGAGAAAAGGCA  493

seq1  CGCAGTTTATCAGCATCCCTGAACATGCAGGAGCTATATCTTTTTGAAAT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGTTTATCAGCATCCCTGAACATGCAGGAGCTATATCTTTTTGAAAT  543

seq1  AATTTCCTTTAGAGATGGAGCTTTGGATGTCTAGGTCTCTCCTTGTAATT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCTTTAGAGATGGAGCTTTGGATGTCTAGGTCTCTCCTTGTAATT  593

seq1  CAGGACACATTCTCAGGTTTAGAATTAGGATGAGAAAAGAACATTTATTT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACACATTCTCAGGTTTAGAATTAGGATGAGAAAAGAACATTTATTT  643

seq1  ATTTTTTTATTATTGTCACTCCATTATTTTATAGACATTTTTAAATAGAA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTATTATTGTCACTCCATTATTTTATAGACATTTTTAAATAGAA  693

seq1  AAGTTGATAAATAATGATGTTTTTCTCTAATTAAATTTAAAATTTGTCCC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGATAAATAATGATGTTTTTCTCTAATTAAATTTAAAATTTGTCCC  743

seq1  ATAGCTACCCTGGTGTATATGCATGTTTCTTTTTTTTTTTTGATGTGTTA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTACCCTGGTGTATATGCATGTTTCTTTTTTTTTTTTGATGTGTTA  793

seq1  TTAGATTTTTGCAAGTAAATGCATGACATCATAATACCACATTCATTCCT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTTTTGCAAGTAAATGCATGACATCATAATACCACATTCATTCCT  843

seq1  AAATCGTTTGGTAAATATGTTAAATTTTCGTCTGCTGAAAGACACTTATG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCGTTTGGTAAATATGTTAAATTTTCGTCTGCTGAAAGACACTTATG  893

seq1  ATAAAGCAAACCCATCATCTATTGTTTAATTAATATATAAAATCTCCACA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCAAACCCATCATCTATTGTTTAATTAATATATAAAATCTCCACA  943

seq1  TTCTTCCAGTAGAAATATTGGGTTTTGCTCCCCCCCCCCTCCAGGGGAAC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCAGTAGAAATATTGGGTTTTGCTCCCCCCCCCCTCCAGGGGAAC  993

seq1  TGCTCATGGATTACATATTTTAATCTGTTCTGGCTCTTTAATTCATTTTA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATGGATTACATATTTTAATCTGTTCTGGCTCTTTAATTCATTTTA  1043

seq1  TTCTTCATCTTTGCTTTTCTCATGCCTGAAAAAGTCACTTGATGGAGCCC  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCATCTTTGCTTTTCTCATGCCTGAAAAAGTCACTTGATGGAGCCC  1093

seq1  ATGGCTTGTGTTTAGTTCAGTGTTTCAAAGTCAAAATTGCTCAGGACTCT  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTGTGTTTAGTTCAGTGTTTCAAAGTCAAAATTGCTCAGGACTCT  1143

seq1  GACTCGTGGCAAGAATTC  1156
      ||||||||||||||||||
seq2  GACTCGTGGCAAGAATTC  1161


seq1: chr5_81964495_81965578
seq2: B6Ng01-272I21.g_66_1146

seq1  GAATTCAATGTGCCTCATAAGGTAGGGGCCAAAGATGCACAGACACGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGTGCCTCATAAGGTAGGGGCCAAAGATGCACAGACACGACC  50

seq1  ATGCCTGGTCCTGATGTATTAACCTTGAGGGAGCCAGGTGTCTATTGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGGTCCTGATGTATTAACCTTGAGGGAGCCAGGTGTCTATTGTTA  100

seq1  CTGAGAGAGTCTTAAACATCCCCCAGAATTTAGTTGGCAACACTCAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGAGTCTTAAACATCCCCCAGAATTTAGTTGGCAACACTCAGATG  150

seq1  CATTTCTTTCTTTCTTCCATTAACAAATCTGTTTGCCAGTCAGGGATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTTTCTTTCTTCCATTAACAAATCTGTTTGCCAGTCAGGGATTTA  200

seq1  AAAAAAATTATTATTCCTCAGATACTAGCCAGGAGGTCACATTGCCCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATTATTATTCCTCAGATACTAGCCAGGAGGTCACATTGCCCTCA  250

seq1  CAAGGGGAGGGCACAGTAGATGAGTTGTTACAGCTCGTTGTCCTTCATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGGAGGGCACAGTAGATGAGTTGTTACAGCTCGTTGTCCTTCATAC  300

seq1  TTCCTCCTCTTTAGGAGGTTACCTTTGTGGTGTCCTTTACTAAGGTATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCTCTTTAGGAGGTTACCTTTGTGGTGTCCTTTACTAAGGTATTC  350

seq1  AAAAGGCAGAGGGATTTTTTGCTTGTAATACTTCCTGAAAAGACCAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCAGAGGGATTTTTTGCTTGTAATACTTCCTGAAAAGACCAAATT  400

seq1  GGTTGGTTTTTAAGCCAATTAATCTAAGAAGAGAACACCTGTCTCTCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGTTTTTAAGCCAATTAATCTAAGAAGAGAACACCTGTCTCTCCTT  450

seq1  AAATAATGAGTCCGATGTTTTCCCATGAATACATTTTGGGAAATAATGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATGAGTCCGATGTTTTCCCATGAATACATTTTGGGAAATAATGCT  500

seq1  GATCAGTGGAGCCATAATTCATTTCTAGTCATCTATTTCTTCCAATTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGTGGAGCCATAATTCATTTCTAGTCATCTATTTCTTCCAATTTGA  550

seq1  AACAAATAAAAGCTTCCTGGTCGCGAGGCTCCTGGGAAGAAAAAACAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATAAAAGCTTCCTGGTCGCGAGGCTCCTGGGAAGAAAAAACAAGC  600

seq1  TGATTGTTCTCTTGCCTGTGGAGATATTCTCCGTGAAGAGGAGCTCAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGTTCTCTTGCCTGTGGAGATATTCTCCGTGAAGAGGAGCTCAGAT  650

seq1  GTACTTGGCAGTGATTGACTTGTTTAAAGACGAGGGTAGCAGTGTTAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTGGCAGTGATTGACTTGTTTAAAGACGAGGGTAGCAGTGTTAGAA  700

seq1  GAGGCACTTGTTCATTTTTAAGTCGCGGAGCCTAAATGAGGTAGACTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCACTTGTTCATTTTTAAGTCGCGGAGCCTAAATGAGGTAGACTGTT  750

seq1  AGAAGGCTCCTTCAGTCTTCTGTCGTGTTTGCTTGTGAACTAATGACCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCTCCTTCAGTCTTCTGTCGTGTTTGCTTGTGAACTAATGACCAT  800

seq1  TCTGGGCGTAGATATTAACTGCAAGTTGTTCTGAAGAAACTCACTGCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCGTAGATATTAACTGCAAGTTGTTCTGAAGAAACTCACTGCTGT  850

seq1  TGCACGCATATGAATAACGCCTTATCTCTCAACTGCCTTTCACGCTAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGCATATGAATAACGCCTTATCTCTCAACTGCCTTTCACGCTAAAG  900

seq1  CAGCTCAGGAAATTCCTATGCAATGAATTATTTTACATGAATAGTTTTAT  950
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCA-GAAATTCCTATGCAATGAATTATTTTACATGAATAGTTTTAT  949

seq1  CTCGGCCTACAGATGAGAAATTGGAGAAACGATTCACAGGATATTTCTGT  1000
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTCGGCCTACAGATGAG-AATTGGAGAAACGATTCACAGGATATTTCTGT  998

seq1  ACAGTAATAGAAAAATAATAGCTA-TTTTCTTTTTAAAAAATGAAATAAA  1049
      ||||| |||||||||||||||||| |||||||||| ||||||||||||||
seq2  ACAGT-ATAGAAAAATAATAGCTATTTTTCTTTTTTAAAAATGAAATAAA  1047

seq1  ATAAG-TTTTGTGCCCATAAGGTTTAGAAAGAACAC  1084
      ||||| ||||||| |||| | |||||| ||||||||
seq2  ATAAGTTTTTGTG-CCATTACGTTTAG-AAGAACAC  1081


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