MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-273M05
Chromosome	5 (Build37)
Map Location	117,184,063 - 117,319,143
singlet/doublet	doublet
Overlap gene	Gm1684
Upstream gene	LOC665032, Cit, Prkab1, LOC545798, Ccdc60, 4930562A09Rik, Hspb8, 1500001A10Rik, LOC433943
Downstream gene	LOC665073, Suds3, Taok3, Pebp1, LOC100042313, LOC100039359, BC023744, LOC667175, Wsb2, Rfc5, Ksr2, Nos1
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC665032 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665032
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 mRNAs, 961 ESTs, 5 Proteins

name	Cit (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12704 MGI:105313
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Prkab1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19079 MGI:1336167
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC545798 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:545798
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Ccdc60 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:269693 MGI:2141043
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930562A09Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75303 MGI:1922553
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 11 ESTs

name	Hspb8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:80888 MGI:2135756
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1500001A10Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68955 MGI:1916205
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC433943 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:433943
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 134 ESTs, 20 Proteins pseudo : _no_value

name	Gm1684 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381709 MGI:2686530
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	LOC665073 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665073
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 84 ESTs, 1 Protein pseudo : _no_value

name	Suds3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71954 MGI:1919204
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Taok3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:330177 MGI:3041177
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pebp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:23980 MGI:1344408
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042313 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042313
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	LOC100039359 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039359
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	BC023744 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:231668 MGI:2448533
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667175 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667175
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 28 ESTs, 5 Proteins pseudo : _no_value

name	Wsb2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:59043 MGI:2144041
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rfc5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72151 MGI:1919401
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ksr2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:333050 MGI:3610315
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nos1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18125 MGI:97360
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665032 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94375577 GeneID:665032
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 mRNAs, 960 ESTs, 5 Proteins product : similar to ribosomal protein transcript_id : XM_974069.1

name	Cit (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487318 GeneID:12704 MGI:105313
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : citron transcript_id : NM_007708.3

name	Prkab1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130748 GeneID:19079 MGI:1336167
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein kinase, AMP-activated, beta 1 non-catalytic subunit transcript_id : NM_031869.2

name	LOC545798 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94375579 GeneID:545798
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : similar to MGC79481 protein transcript_id : XM_620250.3

name	Ccdc60 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802445 GeneID:269693 MGI:2141043
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 60 transcript_id : NM_177759.3

name	Hspb8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892223 GeneID:80888 MGI:2135756
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : heat shock protein 8 transcript_id : NM_030704.2

name	1500001A10Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126215551 GeneID:68955 MGI:1916205
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1500001A10 gene transcript_id : NM_026886.3

name	Gm1684 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149254539 GeneID:381709 MGI:2686530
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : gene model 1684, (NCBI) transcript_id : XM_001472646.1

name	Suds3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31581562 GeneID:71954 MGI:1919204
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : suppressor of defective silencing 3 homolog (S. cerevisiae) transcript_id : NM_178622.3

name	Taok3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486800 GeneID:330177 MGI:3041177
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : TAO kinase 3 transcript_id : NM_001081308.1

name	Pebp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84794551 GeneID:23980 MGI:1344408
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphatidylethanolamine binding protein 1 transcript_id : NM_018858.2

name	LOC100039359 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254542 GeneID:100039359
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : hypothetical protein LOC100039359 transcript_id : XM_001472751.1

name	BC023744 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142345853 GeneID:231668 MGI:2448533
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC023744 transcript_id : NM_001033311.2

name	Wsb2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142369522 GeneID:59043 MGI:2144041
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : WD repeat and SOCS box-containing 2 transcript_id : NM_021539.4

name	Rfc5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110625923 GeneID:72151 MGI:1919401
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : replication factor C (activator 1) 5 transcript_id : NM_028128.1

name	Ksr2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131065 GeneID:333050 MGI:3610315
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : kinase suppressor of ras 2 transcript_id : NM_001034873.2

name	Nos1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130618 GeneID:18125 MGI:97360
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nitric oxide synthase 1, neuronal transcript_id : NM_008712.2

name	LOC665032 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:94375578 GeneID:665032
definition	codon_start : 1 product : similar to ribosomal protein protein_id : XP_979163.1

name	Cit (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487319 CCDS:CCDS19597.1 GeneID:12704 MGI:105313
definition	GO_component : GO:0015629 - actin cytoskeleton [Evidence IDA]; GO:0005737 - cytoplasm [Evidence IDA]; GO:0005622 - intracellular [Evidence IDA] [Evidence IEA]; GO:0001726 - ruffle [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0019992 - diacylglycerol binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IDA]; GO:0004713 - protein-tyrosine kinase activity [Evidence IDA]; GO:0005083 - small GTPase regulator activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IMP]; GO:0016358 - dendrite development [Evidence IMP]; GO:0007275 - development [Evidence IEA]; GO:0048699 - generation of neurons [Evidence IMP] [Evidence IDA]; GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0007067 - mitosis [Evidence IEA]; GO:0007091 - mitotic metaphase/anaphase transition [Evidence IMP]; GO:0000070 - mitotic sister chromatid segregation [Evidence IMP]; GO:0050774 - negative regulation of dendrite morphogenesis [Evidence IDA]; GO:0007399 - nervous system development [Evidence IEA]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]; GO:0007283 - spermatogenesis [Evidence IMP] codon_start : 1 note : citron kinase; citron-N product : citron protein_id : NP_031734.3

name	Prkab1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23956234 CCDS:CCDS19598.1 GeneID:19079 MGI:1336167
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0004679 - AMP-activated protein kinase activity [Evidence TAS]; GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0006633 - fatty acid biosynthesis [Evidence IEA]; GO:0008610 - lipid biosynthesis [Evidence IEA]; GO:0006950 - response to stress [Evidence TAS] codon_start : 1 product : AMP-activated protein kinase beta 1 non-catalytic subunit protein_id : NP_114075.1

name	LOC545798 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:63533863 GeneID:545798
definition	codon_start : 1 product : similar to MGC79481 protein protein_id : XP_620250.1

name	Ccdc60 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244264 CCDS:CCDS19599.1 GeneID:269693 MGI:2141043
definition	codon_start : 1 product : coiled-coil domain containing 60 protein_id : NP_808427.1

name	Hspb8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13507646 CCDS:CCDS19600.1 GeneID:80888 MGI:2135756
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0006457 - protein folding [Evidence IEA]; GO:0006986 - response to unfolded protein [Evidence IEA] codon_start : 1 note : crystallin, alpha C; heat shock 27kDa protein 8 product : heat shock protein 20-like protein protein_id : NP_109629.1

name	1500001A10Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30794434 CCDS:CCDS19601.1 GeneID:68955 MGI:1916205
definition	codon_start : 1 product : hypothetical protein LOC68955 protein_id : NP_081162.1

name	Gm1684 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149254540 GeneID:381709 MGI:2686530
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472696.1

name	Suds3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31559849 GeneID:71954 MGI:1919204
definition	GO_component : GO:0016580 - Sin3 complex [Evidence IDA] GO_function : GO:0042826 - histone deacetylase binding [Evidence IDA]; GO:0042802 - identical protein binding [Evidence IPI] GO_process : GO:0016568 - chromatin modification [Evidence IEA]; GO:0016481 - negative regulation of transcription [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation product : RIKEN cDNA 2400003N08 protein_id : NP_848737.2

name	Taok3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486801 GeneID:330177 MGI:3041177
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004601 - peroxidase activity [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA] codon_start : 1 product : TAO kinase 3 protein_id : NP_001074777.1

name	Pebp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84794552 GeneID:23980 MGI:1344408
definition	GO_component : GO:0009986 - cell surface [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0004866 - endopeptidase inhibitor activity [Evidence IEA]; GO:0008289 - lipid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004867 - serine-type endopeptidase inhibitor activity [Evidence IEA] GO_process : GO:0048240 - sperm capacitation [Evidence IDA] codon_start : 1 product : phosphatidylethanolamine binding protein 1 protein_id : NP_061346.2

name	LOC100039359 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254543 GeneID:100039359
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472801.1

name	BC023744 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701814 CCDS:CCDS19603.1 GeneID:231668 MGI:2448533
definition	codon_start : 1 product : hypothetical protein LOC231668 protein_id : NP_001028483.1

name	Wsb2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982686 CCDS:CCDS19604.1 GeneID:59043 MGI:2144041
definition	GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA] codon_start : 1 note : WD-40-repeat-containing protein with a SOCS box 2 product : WSB-2 protein protein_id : NP_067514.2

name	Rfc5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625924 GeneID:72151 MGI:1919401
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006260 - DNA replication [Evidence IEA] codon_start : 1 note : replication factor C, 36 kDa product : replication factor C 5 protein_id : NP_082404.1

name	Ksr2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85702215 CCDS:CCDS19605.1 GeneID:333050 MGI:3610315
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA] GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 product : kinase suppressor of ras 2 protein_id : NP_001030045.1

name	Nos1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6724321 CCDS:CCDS19606.1 GeneID:18125 MGI:97360
definition	GO_component : GO:0005739 - mitochondrion [Evidence ISS]; GO:0045202 - synapse [Evidence IDA] GO_function : GO:0005516 - calmodulin binding [Evidence IEA]; GO:0009055 - electron carrier activity [Evidence IEA]; GO:0050660 - FAD binding [Evidence IEA]; GO:0010181 - FMN binding [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]; GO:0004517 - nitric-oxide synthase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS] GO_process : GO:0006118 - electron transport [Evidence IEA]; GO:0006809 - nitric oxide biosynthesis [Evidence IEA]; GO:0006941 - striated muscle contraction [Evidence IMP] codon_start : 1 note : neuronal nitric oxide synthase product : nitric oxide synthase 1, neuronal protein_id : NP_032738.1

name	LOC100042313 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042313
definition	number : 1 pseudo : _no_value

name	4930562A09Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149254571 GeneID:75303 MGI:1922553
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 11 ESTs product : RIKEN cDNA 4930562A09 gene transcript_id : XR_035352.1

name	LOC433943 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149254572 GeneID:433943
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 134 ESTs, 20 Proteins product : similar to Glutathione S-transferase Mu 1 (GST class-mu 1) (Glutathione S-transferase GT8.7) (pmGT10) (GST 1-1) pseudo : _no_value transcript_id : XR_034042.1

name	LOC665073 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149254541 GeneID:665073
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 84 ESTs, 1 Protein product : similar to ubiquitin-conjugating enzyme E2E 1 pseudo : _no_value transcript_id : XR_030833.1

name	LOC667175 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149254573 GeneID:667175
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 28 ESTs, 5 Proteins product : similar to ribosomal protein L27a pseudo : _no_value transcript_id : XR_034064.1

clone name	MSMg01-184J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-138M20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-213L23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-482I21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-546D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-217K23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-452D15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063C02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-363D09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-382B15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-278B01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-180H21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-175L16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-527L21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-519L18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-332A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-125F21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-499J24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-312M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-052D12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-430O20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-517K11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-268B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-159B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-511L10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-262M06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-355C23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-054N06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-084O24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-137I08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-435D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-181M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-318N17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-374F09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372J01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-110F01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-308C15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-501P20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478L18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-461A04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-176M04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-176M12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-317E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-166J03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-066F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-377O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-355O24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-142D15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353I07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-060D12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-426I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-517O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-137K14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-502J10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-337F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-099D09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-334C11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-517N02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-121F06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-435D16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-403O20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540M14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-147L10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-147K09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-147L08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-323P06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-231M24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-348J10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-176J14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-301G20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-529D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-144C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-309L22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-365G15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349E04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349L23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-276O01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-508D23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-387E03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-543H04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-430L05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080F06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-075B16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-510M24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-079H14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-391I20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-131P22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-519J09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-446M15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-091C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251M11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-093D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138G12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-159O07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-137M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233K12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-305M12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134P14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-202A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162G19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270N03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-026B05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-265C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319M07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163C04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-077G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067M10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-173C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014B01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-264I16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-237M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017M03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-184M16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-349K08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-124L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218J18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101H24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-108F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087J17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317J17
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-273M05.b	B6Ng01-273M05.g
ACC	GA075251	GA075252
length	1,081	546
definition	B6Ng01-273M05.b	B6Ng01-273M05.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(117,184,063 - 117,185,139)	(117,318,592 - 117,319,143)
sequence	gaattccgcaacttgtaaaaacagaagttgcacctccattcagcatcctt cactatagcagtggaaatgggccagcaggatgcagctaatcttgattcac tttattagccaaaggtctgcacactaatgtcagccatgctcacacatgcc ttagagacaaccctcagtcaaacagagactcttacccagagtctcacctc tttcccaatacatcccatatctaacaaccaactagcccagagctagaaaa gtgtggcctattttaatacaggatgctgttgtatcatccttactccaggg ctccccatggggtcaggccgtggtcatcaatgaataatacagacttcatt cactcctgcctcatgccttctcccctttcctagctccctccctgttatgg tttgtatatgttctgctcaggaagtggcactattagaaggtgtggaccct gttggagtaggtgtggccctgttggagtaggcgtgatcttattatagtgg catggcgttgttctagtgggcgtggccttgttggggtaggtgtgccactg tgggcataggctttttaaaaaccctcatcctagctgcctggcaaccagtc ttcagatagcagtgtttagatgaagatgtagaactctcagctcttcctga accatgcctgcctggatgctgccatgttctctccttgatgatactggact gaacctctgaacctgtaaagccagccccaattaaatcttgtccttataag agttgccttggtcatggattctgttcacagcagtaaaacactctcccttt ctcccacctcccctcttctcacctcaatacatcaagtttgtaggaattct actgcatgtcacactctttgttctatggagcccaatctgaaatacaacat ggtcttcgatccttgaaacccagtgtttatcagcaatggttagttcatgt tttttatcacctaccacataccagatacctgctatatatgtcttttactt gtgacttcaaagctcagtgcactgtttgccaccgcacagagtaaaacacc caatgctctgagaagtgatggtgtggaagat	aggtcctcacacttttccaggttcattccccagtccagagattaatttga ctttccgagatgggcagatggaggctcagagcaacaggacaatgtcccct tcatgcaggtagaataaaaccttcccttagcctccctcccgaccgcagat ttcccagggagctgcttccagactgacgcgggctttccctttggctcttg gtggacagggggctccacgcctcgtcctgagcttcacctgtctgatgctg attgagataaagtctctctgatcatttagctatgctggtcacacccccat gtcccagaacggtgttgagaaatgcaatttgtggcatcccaggtggaaaa tttctgattctctctgacggaggatgtcgaggtggattggtctctagcct ggtggaaatataaacgtccgctctgagaataaaggagctaggtgcggggg ggaaaggggggatgaggtcttggaaagtgatggaaagctggctgtttgga atgtttaaattaaccagggatctcccagtcgctgccttccccgggc
quality values	Open. Hide. 47 14 22 22 54 48 38 30 48 52 41 52 54 47 62 62 62 62 62 62 56 56 38 56 62 56 56 62 62 47 62 56 32 33 27 21 21 19 50 36 28 44 50 59 59 62 59 59 62 62 59 56 59 43 62 62 59 59 59 62 59 62 62 62 54 62 62 59 62 62 62 59 59 59 51 59 59 51 62 59 59 62 59 59 46 59 59 59 62 62 62 62 62 62 59 59 62 62 59 59 62 62 62 62 62 59 59 56 62 59 59 62 62 59 62 59 56 56 62 59 59 59 59 59 59 62 62 62 62 62 62 62 59 59 59 59 59 59 59 62 62 59 62 56 62 59 62 62 62 62 62 62 62 59 59 59 59 62 59 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 59 59 59 62 54 62 62 62 62 62 59 62 59 59 59 62 62 62 62 59 59 56 54 56 56 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 59 59 59 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 46 62 62 62 62 62 62 62 62 59 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 56 62 56 56 56 47 43 38 46 56 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 54 56 62 56 62 62 62 62 62 62 62 62 62 62 56 62 56 56 62 62 62 62 62 62 62 62 47 54 62 62 54 43 51 62 62 62 62 62 62 56 43 39 47 47 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 47 43 62 52 62 54 62 62 62 62 41 52 45 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 49 62 62 62 62 62 62 52 62 62 52 62 62 52 46 45 39 54 58 58 54 54 52 52 52 52 47 58 49 41 41 52 54 54 54 58 54 37 35 54 37 49 52 47 39 42 41 48 25 58 41 54 35 58 39 58 54 54 42 54 35 42 41 54 37 58 54 50 58 52 54 54 52 34 54 58 39 52 53 52 52 49 53 58 50 52 54 36 52 54 52 52 47 54 35 52 52 54 52 46 40 46 50 50 49 42 50 33 53 58 35 50 52 50 47 41 45 49 34 54 58 37 22 42 53 39 50 51 37 49 58 49 39 50 58 51 50 51 46 39 52 27 29 28 15 26 31 42 54 17 9 58 16 18 50 32 22 31 42 58 58 58 29 39 29 49 42 58 58 50 50 36 52 51 31 26 58 32 50 52 41 33 58 18 58 32 51 40 37 30 50 32 32 58 41 30 39 39 39 58 51 49 29 39 53 39 41 12 51 24 31 32 38 41 50 50 19 32 39 54 54 51 39 32 39 54 52 42 37 54 42 28 51 33 27 42 52 50 38 25 32 51 54 44 51 54 40 50 54 33 33 35 21 17 29 7 40 39 38 52 26 33 33 31 23 37 37 31 23 37 28 47 32 53 22 28 26 26 33 28 31 42 42 25 28 31 31 41 23 23 17 35 31 28 24 30 20 31 35 41 22 53 11 14 36 7 14 23 29 32 45 40 34 21 46 51 28 13 32 37 33 31 29 33 51 30 24 17 34 16 32 30 20 21 21 27 24 36 34 33 33 22 36 30 36 27 11 21 29 36 35 10 9 40 31 21 24 37 26 7 46 7 14 26 34 27 31 36 30 18 13 46 15 8 31 18 17 28 23 30 23 26 41 18 46 48 31 46 15 11 11 8 12 26 31 31 32 30 37 18 30 19 32 25 22 25 7 6 16 22 31 25 22 18 42 11 25 19 14 18 11 14 31 23 9 18 9 44 38 27 14 44 9 11 26 20 26 37 33 7 9 15 10 38 14 5 4 12 19 11 6 17 33 33 7 8 15 32 17 37 14 21 37 19 13 9 26 16 18 14 27 28 14 20 5 5 16 39 39 17 6 4 6 20 15 8 18 13 29 18 14 27 16 14 24 11 24 21 4 5 14 14 5 28 28 15 26 5 7 13 11 7 6 4 6	Open. Hide. 44 62 62 62 45 45 43 40 24 43 28 27 32 34 43 38 62 49 36 62 62 62 62 59 59 62 62 62 62 62 62 59 59 59 62 59 59 62 59 59 59 59 62 62 62 62 62 62 62 49 49 59 43 38 48 48 50 62 59 54 62 62 62 62 62 62 62 54 62 62 62 59 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 59 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 54 54 59 62 62 62 62 62 62 62 62 62 62 59 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 59 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 49 47 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 46 37 32 62 62 62 62 62 62 62 62 62 54 41 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 41 62 49 30 52 40 24 43 36 46 41 47 52 46 43 50 34 28 38 29 18 18 9 12 14 11 26 19 17 8 13 19 17 17 12 12 21 21 12 17 34 13 9 6 9 12 12 17 13 9 19 17 19 13 15 12 35 21 22 19 13 12 9 4 8 7 9 16 9 10 11 16 9 9 9 16 10 13 9 8 9 9 17 9

Alignment Information

BAC End 1

BAC End 2

seq1: chr5_117184063_117185139
seq2: B6Ng01-273M05.b_46_1126

seq1  GAATTCCGCAACTTGTAAAAACAGAAGTTGCACCTCCATTCAGCATCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGCAACTTGTAAAAACAGAAGTTGCACCTCCATTCAGCATCCTT  50

seq1  CACTATAGCAGTGGAAATGGGCCAGCAGGATGCAGCTAATCTTGATTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATAGCAGTGGAAATGGGCCAGCAGGATGCAGCTAATCTTGATTCAC  100

seq1  TTTATTAGCCAAAGGTCTGCACACTAATGTCAGCCATGCTCACACATGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAGCCAAAGGTCTGCACACTAATGTCAGCCATGCTCACACATGCC  150

seq1  TTAGAGACAACCCTCAGTCAAACAGAGACTCTTACCCAGAGTCTCACCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGACAACCCTCAGTCAAACAGAGACTCTTACCCAGAGTCTCACCTC  200

seq1  TTTCCCAATACATCCCATATCTAACAACCAACTAGCCCAGAGCTAGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAATACATCCCATATCTAACAACCAACTAGCCCAGAGCTAGAAAA  250

seq1  GTGTGGCCTATTTTAATACAGGATGCTGTTGTATCATCCTTACTCCAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGCCTATTTTAATACAGGATGCTGTTGTATCATCCTTACTCCAGGG  300

seq1  CTCCCCATGGGGTCAGGCCGTGGTCATCAATGAATAATACAGACTTCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCATGGGGTCAGGCCGTGGTCATCAATGAATAATACAGACTTCATT  350

seq1  CACTCCTGCCTCATGCCTTCTCCCCTTTCCTAGCTCCCTCCCTGTTATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTGCCTCATGCCTTCTCCCCTTTCCTAGCTCCCTCCCTGTTATGG  400

seq1  TTTGTATATGTTCTGCTCAGGAAGTGGCACTATTAGAAGGTGTGGACCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATATGTTCTGCTCAGGAAGTGGCACTATTAGAAGGTGTGGACCCT  450

seq1  GTTGGAGTAGGTGTGGCCCTGTTGGAGTAGGCGTGATCTTATTATAGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAGTAGGTGTGGCCCTGTTGGAGTAGGCGTGATCTTATTATAGTGG  500

seq1  CATGGCGTTGTTCTAGTGGGCGTGGCCTTGTTGGGGTAGGTGTGCCACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCGTTGTTCTAGTGGGCGTGGCCTTGTTGGGGTAGGTGTGCCACTG  550

seq1  TGGGCATAGGCTTTTTAAAAACCCTCATCCTAGCTGCCTGGCAACCAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATAGGCTTTTTAAAAACCCTCATCCTAGCTGCCTGGCAACCAGTC  600

seq1  TTCAGATAGCAGTGTTTAGATGAAGATGTAGAACTCTCAGCTCTTCCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATAGCAGTGTTTAGATGAAGATGTAGAACTCTCAGCTCTTCCTGA  650

seq1  ACCATGCCTGCCTGGATGCTGCCATGTTCTCTCCTTGATGATACTGGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCCTGCCTGGATGCTGCCATGTTCTCTCCTTGATGATACTGGACT  700

seq1  GAACCTCTGAACCTGT-AAGCCAGCCCCAATTAAATCTTGTCCTTATAAG  749
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GAACCTCTGAACCTGTAAAGCCAGCCCCAATTAAATCTTGTCCTTATAAG  750

seq1  AGTTGCCTTGGTCATGGATTCTGTTCACAGCAGTAAAACACTCTCCCTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCCTTGGTCATGGATTCTGTTCACAGCAGTAAAACACTCTCCCTTT  800

seq1  CTCCCACCTCCCCTCTTCTCACCTCAATACATCAAGTTTGTAGGAATTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACCTCCCCTCTTCTCACCTCAATACATCAAGTTTGTAGGAATTCT  850

seq1  ACTGCATGTCACACTC-TTGTTCTATGGAGCCCAATCTGAAATACAACAT  898
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACTGCATGTCACACTCTTTGTTCTATGGAGCCCAATCTGAAATACAACAT  900

seq1  GGTCTTCGATCC-TGAAACCCAGTG-TTATCAGCAATGGTTAGTTCATG-  945
      |||||||||||| |||||||||||| ||||||||||||||||||||||| 
seq2  GGTCTTCGATCCTTGAAACCCAGTGTTTATCAGCAATGGTTAGTTCATGT  950

seq1  TTTTTATCACCTACCACATACCAGGATACCTGCTTATATATGTC-TTTAC  994
      ||||||||||||||||||||||| ||||||||| |||||||||| |||||
seq2  TTTTTATCACCTACCACATACCA-GATACCTGC-TATATATGTCTTTTAC  998

seq1  CTGTGACCTCAAAGGCTCAGTGCCACTG-TTGCCACCGCACAGAGGAAAA  1043
       |||||| ||||| |||||||| ||||| |||||||||||||||| ||||
seq2  TTGTGACTTCAAA-GCTCAGTG-CACTGTTTGCCACCGCACAGAGTAAAA  1046

seq1  CA-CCAATGCTCTGAGAAGTGATGGTGTGGAAGAT  1077
      || ||||||||||||||||||||||||||||||||
seq2  CACCCAATGCTCTGAGAAGTGATGGTGTGGAAGAT  1081

seq1: chr5_117318592_117319143
seq2: B6Ng01-273M05.g_68_619 (reverse)

seq1  GCCCGGGGAAGGCAGCGACTGGGAGATCCCTGGTTAATTTTAACATTCCA  50
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCCCGGGGAAGGCAGCGACTGGGAGATCCCTGGTTAATTTAAACATTCCA  50

seq1  AACAGCCAGCTTTCCATCACTTTCCAAGACCTCATCCCCCCTTTCCCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCAGCTTTCCATCACTTTCCAAGACCTCATCCCCCCTTTCCCCCC  100

seq1  CGCACCTAGCTCCTTTATTCTCAGAGCGGACGTTTATATTTCCACCAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACCTAGCTCCTTTATTCTCAGAGCGGACGTTTATATTTCCACCAGGC  150

seq1  TAGAGACCAATCCACCTCGACATCCTCCGTCAGAGAGAATCAGAAATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACCAATCCACCTCGACATCCTCCGTCAGAGAGAATCAGAAATTTT  200

seq1  CCACCTGGGATGCCACAAATTGCATTTCTCAACACCGTTCTGGGACATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGGGATGCCACAAATTGCATTTCTCAACACCGTTCTGGGACATGG  250

seq1  GGGTGTGACCAGCATAGCTAAATGATCAGAGAGACTTTATCTCAATCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTGACCAGCATAGCTAAATGATCAGAGAGACTTTATCTCAATCAGC  300

seq1  ATCAGACAGGTGAAGCTCAGGACGAGGCGTGGAGCCCCCTGTCCACCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGACAGGTGAAGCTCAGGACGAGGCGTGGAGCCCCCTGTCCACCAAG  350

seq1  AGCCAAAGGGAAAGCCCGCGTCAGTCTGGAAGCAGCTCCCTGGGAAATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAAGGGAAAGCCCGCGTCAGTCTGGAAGCAGCTCCCTGGGAAATCT  400

seq1  GCGGTCGGGAGGGAGGCTAAGGGAAGGTTTTATTCTACCTGCATGAAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTCGGGAGGGAGGCTAAGGGAAGGTTTTATTCTACCTGCATGAAGGG  450

seq1  GACATTGTCCTGTTGCTCTGAGCCTCCATCTGCCCATCTCGGAAAGTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTGTCCTGTTGCTCTGAGCCTCCATCTGCCCATCTCGGAAAGTCAA  500

seq1  ATTAATCTCTGGACTGGGGAATGAACCTGGAAAAGTGTGAGGACCTGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATCTCTGGACTGGGGAATGAACCTGGAAAAGTGTGAGGACCTGAAT  550

seq1  TC  552
      ||
seq2  TC  552

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BAC

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Alignment Information