BAC Information

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BAC

Clone NameB6Ng01-276M23
Chromosome5 (Build37)
Map Location 49,687,235 - 49,770,089
singlet/doubletdoublet
Overlap genenone
Upstream geneSlit2, 4933428G09Rik, Kcnip4, LOC100041668
Downstream geneLOC100041659, EG433885, LOC666223, Gpr125, EG637307
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276M23.bB6Ng01-276M23.g
ACCGA077495GA077496
length1,1941,128
definitionB6Ng01-276M23.b B6Ng01-276M23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,687,235 - 49,688,432)(49,768,966 - 49,770,089)
sequence
gaattcatattcaggtctatctgcagctgacctactcacaatgcatacct
ctcagccagtgtagggtggggtgagtactaggcacttgggattgccttct
tctcctggaggttggagctgagaaggtgcctcacatctcaactgatagat
ttctgcttttcaaatgtttgagatgaagtgtaacatcgagtcaaagagga
aaaataatggggttgtgacacaatagccaaagaagctccatgacaagaaa
atattaaaggctcctgctttatctctaaaggcaggacacaggatcaaaca
aatgtcctgaacttttttaaactgatcttcacattcacatagacacacag
acacacagacacacagacacacagactctctctctctctctctctctctc
tctctctaaaagtggatagttttattccacaaaaaaggataggatgaatg
caggtgaaaaagatcaaacaatttacccatattaaattcagaattaagta
tcacatattaaatgtgtttggcaggtttttttcctgatctttagagtcat
gctttgaagaactgttggatatcatagcctgcatctctgcctcctataca
agcagaccccacaaactcacattacatactgatttgggttacaccctata
attatccttttactgctgtggactccatcaaaaccacaatagataaatgt
ttttaatatattttgaacaaaaaatatgacttaagattgattataacatt
ttgatttataaaaattttcccattctaaaatatttttaaaagatggggat
ttaaaaaggtgtcctagaaactattcctaaggaacttagaaaggtacagt
tgagcaaattaagtgcgttttcttatgaattgtgttgttatccaatatct
attggtattccatatagtatttttctatgcaaatgtaccaggctgtgact
cacattttcaactctaccttggtaaagagatgcttgttttctgggcattt
gtatactttaaagatttgcctaaactgagacagaagattctacattgctt
caagtctgtcatgtgagcttctctataaggtagctctctctctccactgt
ctttgttcttgagacagtctaagtttctctctttattgctactgaagtcc
attcacctctactgatgctgtttccagcgttccacaggtcacag

gaattctctaagcctcaagtgtccagtaaaacagacagaaaatctcacca
gggctttgtaatgaaatatcccaaacaaacaacaaataaacaaaaccaca
aaatcttgccttgataatttcctaactcagagaatgaatgcctcaagttc
actattggaggcaagtggcgattttcatgagaaatattggcaaatgttat
taccagactcccttccaggagctgcagtgtggttcattacccgaggcact
cctgagggttcctgccctccatcacaatagagcatgctgtttggcactgc
agtgcatcctgatatatctgcaatttattttggaaaagagtttctatgaa
gaataccatattaaagtaagtagtattgaatttccccaacaattccccta
ggctctgttttattattagctccctcatttctttccacatcattttggga
gcagtgacaaaagtgaaaaatgtttatcagaaacagggatttcagatact
tgggggagtgggttgctatctcaggacaaactattttttgtttatttctt
ttgattgtaaacctcatgtaaacgtattttgttgtgtagtcactgtttta
tttttgagggatttttttttctttgaaatgttgatgctgtcacaatgtaa
atttatttggtctgctccatttttggtgcttttcctttgactacagaaag
aaagaaaacaacgattgagcccatttccaaaatattattcagccaagttt
tacgttatagtatgaataaatgcgagtgaatcatagcaggctcttggcat
gtctgaatatttaaagtaaaaacaataaaaacaacagcaatataaacatc
tgatcactatcttagttaaaggttacgattgctgtgataaaactccatga
ccaaagcaccttggggaggtagggaatttagctcactcacatttccaaat
acctgttcatcagcaaaagcagagtggttcgggaactcatgcaggttcag
atcctggaggcaggagctggtgcagaggccatggagcccagttgtactct
ggattaccgtcatggctaactcagccttcattcttatagaaccagggacc
actcaggcctagtattgttaccacccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_49687235_49688432
seq2: B6Ng01-276M23.b_47_1240

seq1  GAATTCATATTCAGGTCTATCTGCAGCTGACCTACTCACAATGCATACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATTCAGGTCTATCTGCAGCTGACCTACTCACAATGCATACCT  50

seq1  CTCAGCCAGTGTAGGGTGGGGTGAGTACTAGGCACTTGGGATTGCCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCAGTGTAGGGTGGGGTGAGTACTAGGCACTTGGGATTGCCTTCT  100

seq1  TCTCCTGGAGGTTGGAGCTGAGAAGGTGCCTCACATCTCAACTGATAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGGAGGTTGGAGCTGAGAAGGTGCCTCACATCTCAACTGATAGAT  150

seq1  TTCTGCTTTTCAAATGTTTGAGATGAAGTGTAACATCGAGTCAAAGAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTTTTCAAATGTTTGAGATGAAGTGTAACATCGAGTCAAAGAGGA  200

seq1  AAAATAATGGGGTTGTGACACAATAGCCAAAGAAGCTCCATGACAAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATGGGGTTGTGACACAATAGCCAAAGAAGCTCCATGACAAGAAA  250

seq1  ATATTAAAGGCTCCTGCTTTATCTCTAAAGGCAGGACACAGGATCAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAAGGCTCCTGCTTTATCTCTAAAGGCAGGACACAGGATCAAACA  300

seq1  AATGTCCTGAACTTTTTTAAACTGATCTTCACATTCACATAGACACACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCTGAACTTTTTTAAACTGATCTTCACATTCACATAGACACACAG  350

seq1  ACACACAGACACACAGACACACAGACTCTCTCTCTCTCTCTCTCTCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAGACACACAGACACACAGACTCTCTCTCTCTCTCTCTCTCTCTC  400

seq1  TCTCTCTAAAAGTGGATAGTTTTATTCCACAAAAAAGGATAGGATGAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTAAAAGTGGATAGTTTTATTCCACAAAAAAGGATAGGATGAATG  450

seq1  CAGGTGAAAAAGATCAAACAATTTACCCATATTAAATTCAGAATTAAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGAAAAAGATCAAACAATTTACCCATATTAAATTCAGAATTAAGTA  500

seq1  TCACATATTAAATGTGTTTGGCAGGTTTTTTTCCTGATCTTTAGAGTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATATTAAATGTGTTTGGCAGGTTTTTTTCCTGATCTTTAGAGTCAT  550

seq1  GCTTTGAAGAACTGTTGGATATCATAGCCTGCATCTCTGCCTCCTATACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGAAGAACTGTTGGATATCATAGCCTGCATCTCTGCCTCCTATACA  600

seq1  AGCAGACCCCACAAACTCACATTACATACTGATTTGGGTTACACCCTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACCCCACAAACTCACATTACATACTGATTTGGGTTACACCCTATA  650

seq1  ATTATCCTTTTACTGCTGTGGACTCCATCAAAACCACAATAGATAAATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCCTTTTACTGCTGTGGACTCCATCAAAACCACAATAGATAAATGT  700

seq1  TTTTAATATATTTTGAACAAAAAATATGACTTAAGATTGATTATAACATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATATATTTTGAACAAAAAATATGACTTAAGATTGATTATAACATT  750

seq1  TTGATTTATAAAAATTTTCCCATTCTAAAATATTTTTAAAAGATGGGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTATAAAAATTTTCCCATTCTAAAATATTTTTAAAAGATGGGGAT  800

seq1  TTAAAAAGGTGTCCTAGAAACTATTCCTAAGGAACTTAGAAAGGTACAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGGTGTCCTAGAAACTATTCCTAAGGAACTTAGAAAGGTACAGT  850

seq1  TGAGCAAATTAAGTGCGTTTTCTTATGAATTGTGTTGTTATCCAATATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAAATTAAGTGCGTTTTCTTATGAATTGTGTTGTTATCCAATATCT  900

seq1  ATTGGTATTCCATATAGTATTTTTCTATGCAAATGTACCAGGCTGTGACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTATTCCATATAGTATTTTTCTATGCAAATGTACCAGGCTGTGACT  950

seq1  CACATTTTCAACTCTACCTTGGTAAAGAGATGCTTGTTTTCTGGGCATTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTTCAACTCTACCTTGGTAAAGAGATGCTTGTTTTCTGGGCATTT  1000

seq1  GTATACTTTAAAGATTTGCCTAAAACTGAGGACAGAAGGATTCTACATTG  1050
      ||||||||||||||||||||| ||||||| ||||||| ||||||||||||
seq2  GTATACTTTAAAGATTTGCCT-AAACTGA-GACAGAA-GATTCTACATTG  1047

seq1  CTTCAAGTTCTGTCATGTGAGCTTCTCTATAGGTAAGCTCTCTCTC-CCA  1099
      ||||||| ||||||||||||||||||||||| |  ||||||||||| |||
seq2  CTTCAAG-TCTGTCATGTGAGCTTCTCTATAAGGTAGCTCTCTCTCTCCA  1096

seq1  CTGTCTTTG-TCTTGAGACAGTCTAAAGTTTCTCTCTTTATTTTGCTACT  1148
      ||||||||| |||||||||||||| |||||||||||||||  ||||||||
seq2  CTGTCTTTGTTCTTGAGACAGTCT-AAGTTTCTCTCTTTA--TTGCTACT  1143

seq1  GAAGCCCAAATTCACCTCTACTGATGCTTGTTCCAGC-TTCCACAG--CA  1195
      |||| ||  |||||||||||||||||||  ||||||| ||||||||  ||
seq2  GAAGTCC--ATTCACCTCTACTGATGCTGTTTCCAGCGTTCCACAGGTCA  1191

seq1  CAG  1198
      |||
seq2  CAG  1194


seq1: chr5_49768966_49770089
seq2: B6Ng01-276M23.g_68_1195 (reverse)

seq1  GTGGGTGGTACCATCCCTAGG-CTG-GTGGTCCTGGGTTCTATAAGAAAG  48
      |||||||||| ||   ||||| ||| |||||||  ||||||||||||| |
seq2  GTGGGTGGTAACAATACTAGGCCTGAGTGGTCCCTGGTTCTATAAGAATG  50

seq1  AAGGCTGAGTAAGCCATGAAGGGTAATCCAGAGTACAACTGGGCTCCATG  98
      |||||||||| ||||||| | |||||||||||||||||||||||||||||
seq2  AAGGCTGAGTTAGCCATG-ACGGTAATCCAGAGTACAACTGGGCTCCATG  99

seq1  GCCTCTGCACCAGCTCCTGCCTCCAGGTTCCTGACCTGCATGAGTTCCCG  148
      ||||||||||||||||||||||||||| ||   |||||||||||||||||
seq2  GCCTCTGCACCAGCTCCTGCCTCCAGGATCTGAACCTGCATGAGTTCCCG  149

seq1  -ACCACTCTGCTTTTGCTGATGAACAGTTATTTGGAAATGTGAGTGAGCT  197
       |||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AACCACTCTGCTTTTGCTGATGAACAGGTATTTGGAAATGTGAGTGAGCT  199

seq1  AAA-TCCCTACCTCCCCAAGGTGCTTTGGTCATGGAGTTTTATCACAGCA  246
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCCTACCTCCCCAAGGTGCTTTGGTCATGGAGTTTTATCACAGCA  249

seq1  ATCGTAACC-TTAACTAAGATAGTGATCAGATGTTTATATTGCTGTTGTT  295
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTAACCTTTAACTAAGATAGTGATCAGATGTTTATATTGCTGTTGTT  299

seq1  TTTATTGTTTTTACTTTAAATATTCAGACATGCCAAGAGCCTGCTATGAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGTTTTTACTTTAAATATTCAGACATGCCAAGAGCCTGCTATGAT  349

seq1  TCACTCGCATTTATTCATACTATAACGTAAAACTTGGCTGAATAATATTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCGCATTTATTCATACTATAACGTAAAACTTGGCTGAATAATATTT  399

seq1  TGGAAATGGGCTCAATCGTTGTTTTCTTTCTTTCTGTAGTCAAAGGAAAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATGGGCTCAATCGTTGTTTTCTTTCTTTCTGTAGTCAAAGGAAAA  449

seq1  GCACCAAAAATGGAGCAGACCAAATAAATTTACATTGTGACAGCATCAAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAAAAATGGAGCAGACCAAATAAATTTACATTGTGACAGCATCAAC  499

seq1  ATTTCAAAGAAAAAAAAATCCCTCAAAAATAAAACAGTGACTACACAACA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAAGAAAAAAAAATCCCTCAAAAATAAAACAGTGACTACACAACA  549

seq1  AAATACGTTTACATGAGGTTTACAATCAAAAGAAATAAACAAAAAATAGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACGTTTACATGAGGTTTACAATCAAAAGAAATAAACAAAAAATAGT  599

seq1  TTGTCCTGAGATAGCAACCCACTCCCCCAAGTATCTGAAATCCCTGTTTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTGAGATAGCAACCCACTCCCCCAAGTATCTGAAATCCCTGTTTC  649

seq1  TGATAAACATTTTTCACTTTTGTCACTGCTCCCAAAATGATGTGGAAAGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAACATTTTTCACTTTTGTCACTGCTCCCAAAATGATGTGGAAAGA  699

seq1  AATGAGGGAGCTAATAATAAAACAGAGCCTAGGGGAATTGTTGGGGAAAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGGAGCTAATAATAAAACAGAGCCTAGGGGAATTGTTGGGGAAAT  749

seq1  TCAATACTACTTACTTTAATATGGTATTCTTCATAGAAACTCTTTTCCAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATACTACTTACTTTAATATGGTATTCTTCATAGAAACTCTTTTCCAA  799

seq1  AATAAATTGCAGATATATCAGGATGCACTGCAGTGCCAAACAGCATGCTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTGCAGATATATCAGGATGCACTGCAGTGCCAAACAGCATGCTC  849

seq1  TATTGTGATGGAGGGCAGGAACCCTCAGGAGTGCCTCGGGTAATGAACCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGATGGAGGGCAGGAACCCTCAGGAGTGCCTCGGGTAATGAACCA  899

seq1  CACTGCAGCTCCTGGAAGGGAGTCTGGTAATAACATTTGCCAATATTTCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCAGCTCCTGGAAGGGAGTCTGGTAATAACATTTGCCAATATTTCT  949

seq1  CATGAAAATCGCCACTTGCCTCCAATAGTGAACTTGAGGCATTCATTCTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAATCGCCACTTGCCTCCAATAGTGAACTTGAGGCATTCATTCTC  999

seq1  TGAGTTAGGAAATTATCAAGGCAAGATTTTGTGGTTTTGTTTATTTGTTG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTAGGAAATTATCAAGGCAAGATTTTGTGGTTTTGTTTATTTGTTG  1049

seq1  TTTGTTTGGGATATTTCATTACAAAGCCCTGGTGAGATTTTCTGTCTGTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGGGATATTTCATTACAAAGCCCTGGTGAGATTTTCTGTCTGTT  1099

seq1  TTACTGGACACTTGAGGCTTAGAGAATTC  1124
      |||||||||||||||||||||||||||||
seq2  TTACTGGACACTTGAGGCTTAGAGAATTC  1128


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