BAC Information

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BAC

Clone NameB6Ng01-277K05
Chromosome5 (Build37)
Map Location 150,388,225 - 150,477,569
singlet/doubletdoublet
Overlap gene4930434E21Rik, Hsp110, EG433968
Upstream gene2210417A02Rik, LOC100041869, Katnal1, 8430423G03Rik, 1810059H22Rik, LOC667386, LOC100039964, Hmgb1, EG667410, LOC100040006, Uspl1, 2310047D07Rik, Alox5ap, 6330406I15Rik, 4930588N13Rik, LOC100040037, LOC100040062
Downstream geneB3galtl, LOC100040089, Rxfp2, LOC667470, Fry, LOC100042068, Gm5, XM_359419, Brca2, B230342M21Rik, BC037393
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277K05.bB6Ng01-277K05.g
ACCGA078106GA078107
length1,0371,117
definitionB6Ng01-277K05.b B6Ng01-277K05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(150,388,225 - 150,389,257)(150,476,447 - 150,477,569)
sequence
gaattccaacagtaatacacaaactagggcacagccttgccttcttcaca
gagttcgcagtttcgtaaagcatcagaggaaataacagagctctatatgc
aaggtttcccaggggagtcatggccttcggctatcacacgtaggtcagtg
aagtgcatatgcatttagtattccagcatgcacacatatgcgctggcata
ctcatgcacttagtaggcagacatagaagagacaaacatgattcttgaga
tgctcacacataggcgaggagataagcatcagaggaaatcggaagcgtgg
aatctagcaaacgatgataatcgaccgcgatgggagagccccaatagctt
tgttgtagcagaatccaggagatcagaagatcactagggggtttttagga
agggaaagataatcttcatgccagccaggagggggtgcttgagcacagag
cggaggcactggggtgtgctgtctgaaaggactgtggagggtctgattgg
ctagcatattagaagtaggcgggaggatatgctaatgagttgtaacagaa
gacacacactacaaagcttaaacaacagaaatctatttccctccgttcca
ggtcctaaggccaggctctggtgaggactccctttctggacaacagatag
aaagctagccactgtcagcatctctttgctgtgtcttcttcacatagaag
agcaagcatgagctgtgtggctcttcctgttcttgtgtggacacaaatcc
cagcacagggactgcattctcatgctctaggtgacaccagtaacctccct
atataccattaccttactttagctcagtggttctcaacatttccaaagct
atgtgacctttaatgcagtccctctgtaattttgttagttatgaatcata
atctaagtatctgatgtgcaacccctgtgaaagagtcatttgacacacac
acaccccaaaggggtcatgaccccacaggatgagaatccctgggtttcgg
tttttgacatggtggaatttgggggaatcaaacgtgc
gaattctcataaacaaccaactccaaaacaagagccaagaaatacaactc
gggtcacctcctcacctctagaggcagcccaaacaagcccccagaaatct
gaggccttttcacacctgattcaccattctcttgacctcttgatgttgtg
cacgtgtaaaggtgtctgttcacagatgggccactgttacagggtatctg
aatctgtctctggttagggtgtggttcagtccttagcacacacctttaat
ctcaaacagtgacggtgaagttagtttgtagaaggaagcatgcatgttta
aaagagatgtctaattggatgacagaaaaagtgaccaatgagagaaagat
ttgacagaataggatacacccaactctcaagagaagagagaggaaaggga
agctacttaagggaaagacagacagcgcaggaggaagagagtacagggca
ggaatacagtagagtccgtagagagcagtgcagtagagttgagagtgaga
gtggagcagcccagagagggagaaggaggcagtgttactgggagagtttt
atagagacagattgaagagagaacaagccagacatgggtaaagacagaag
gagcaagagaatgagaaggaaccagaagattagaaaagattgctagagtt
agtttgaggccaagcagagcaattcagaggcttcaagaaaagccaaatta
aataagtcagctgggagaggagtttgagccataacagctgagttaaacca
gccacccagagctcagaaagagggtgagcttattcaccctagaaagcatt
ctaggcctataaaagatttatgcaaaggctagaagcatccaggtcgaggc
ctgtgttagcagcagaggcagtcagcctcggaggtgacaactgcatccgg
gaaatgaaagttacatttacaaggctacttttcttagggcttctcattag
aggccagatgatccacttgggctgtgtggatctcctgtccaaaaggcgga
cctcctcctcagcccaggtggtgtaagacagagatcatcatgaatgcaga
gcagcagagtagtacgtgatgcatgaattagcagcagtatgatgatgcct
gtgactagctggtcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_150388225_150389257
seq2: B6Ng01-277K05.b_49_1085

seq1  GAATTCCAACAGTAATACACAAACTAGGGCACAGCCTTGCCTTCTTCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACAGTAATACACAAACTAGGGCACAGCCTTGCCTTCTTCACA  50

seq1  GAGTTCGCAGTTTCGTAAAGCATCAGAGGAAATAACAGAGCTCTATATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCGCAGTTTCGTAAAGCATCAGAGGAAATAACAGAGCTCTATATGC  100

seq1  AAGGTTTCCCAGGGGAGTCATGGCCTTCGGCTATCACACGTAGGTCAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTCCCAGGGGAGTCATGGCCTTCGGCTATCACACGTAGGTCAGTG  150

seq1  AAGTGCATATGCATTTAGTATTCCAGCATGCACACATATGCGCTGGCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCATATGCATTTAGTATTCCAGCATGCACACATATGCGCTGGCATA  200

seq1  CTCATGCACTTAGTAGGCAGACATAGAAGAGACAAACATGATTCTTGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGCACTTAGTAGGCAGACATAGAAGAGACAAACATGATTCTTGAGA  250

seq1  TGCTCACACATAGGCGAGGAGATAAGCATCAGAGGAAATCGGAAGCGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACACATAGGCGAGGAGATAAGCATCAGAGGAAATCGGAAGCGTGG  300

seq1  AATCTAGCAAACGATGATAATCGACCGCGATGGGAGAGCCCCAATAGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAGCAAACGATGATAATCGACCGCGATGGGAGAGCCCCAATAGCTT  350

seq1  TGTTGTAGCAGAATCCAGGAGATCAGAAGATCACTAGGGGGTTTTTAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTAGCAGAATCCAGGAGATCAGAAGATCACTAGGGGGTTTTTAGGA  400

seq1  AGGGAAAGATAATCTTCATGCCAGCCAGGAGGGGGTGCTTGAGCACAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAGATAATCTTCATGCCAGCCAGGAGGGGGTGCTTGAGCACAGAG  450

seq1  CGGAGGCACTGGGGTGTGCTGTCTGAAAGGACTGTGGAGGGTCTGATTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGGCACTGGGGTGTGCTGTCTGAAAGGACTGTGGAGGGTCTGATTGG  500

seq1  CTAGCATATTAGAAGTAGGCGGGAGGATATGCTAATGAGTTGTAACAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCATATTAGAAGTAGGCGGGAGGATATGCTAATGAGTTGTAACAGAA  550

seq1  GACACACACTACAAAGCTTAAACAACAGAAATCTATTTCCCTCCGTTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACACTACAAAGCTTAAACAACAGAAATCTATTTCCCTCCGTTCCA  600

seq1  GGTCCTAAGGCCAGGCTCTGGTGAGGACTCCCTTTCTGGACAACAGATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTAAGGCCAGGCTCTGGTGAGGACTCCCTTTCTGGACAACAGATAG  650

seq1  AAAGCTAGCCACTGTCAGCATCTCTTTGCTGTGTCTTCTTCACATAGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAGCCACTGTCAGCATCTCTTTGCTGTGTCTTCTTCACATAGAAG  700

seq1  AGCAAGCATGAGCTGTGTGGCTCTTCCTGTTCTTGTGTGGACACAAATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCATGAGCTGTGTGGCTCTTCCTGTTCTTGTGTGGACACAAATCC  750

seq1  CAGCACAGGGACTGCATTCTCATGCTCTAGGTGACACCAGTAACCTCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAGGGACTGCATTCTCATGCTCTAGGTGACACCAGTAACCTCCCT  800

seq1  ATATACCATTACCTTACTTTAGCTCAGTGGTTCTCAACATTTCCAAAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACCATTACCTTACTTTAGCTCAGTGGTTCTCAACATTTCCAAAGCT  850

seq1  ATGTGACCTTTAATGCAGTCCCTCTGTAATTTTGTTAGTTATGAATCATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACCTTTAATGCAGTCCCTCTGTAATTTTGTTAGTTATGAATCATA  900

seq1  ATCTAAGTATCTGATGTGCAACCCCTGTGAAAGAGTCATTTGACACACAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGTATCTGATGTGCAACCCCTGTGAAAGAGTCATTTGACACACAC  950

seq1  ACACCCCAAAGGGGTCATGA-CCCACAGGATGAGAATCACTGGG-TTCGG  998
      |||||||||||||||||||| ||||||||||||||||| ||||| |||||
seq2  ACACCCCAAAGGGGTCATGACCCCACAGGATGAGAATCCCTGGGTTTCGG  1000

seq1  GTTTTGACAT-GTGG-ATTTGGGGGAATCAAACGTGC  1033
       ||||||||| |||| |||||||||||||||||||||
seq2  TTTTTGACATGGTGGAATTTGGGGGAATCAAACGTGC  1037

seq1: chr5_150476447_150477569
seq2: B6Ng01-277K05.g_66_1182 (reverse)

seq1  AATGACCAGCTAGTCACA-GCATCAAATTTCATACTGGCTGCTAAATCAA  49
      |||||||||||||||||| ||||||    ||||||| |||||||| || |
seq2  AATGACCAGCTAGTCACAGGCATCA----TCATACT-GCTGCTAATTC-A  44

seq1  TGCATCACGTACCTTACCTCCTGCTGCTCTGCATTTCATGATGGATCTCT  99
      ||||||||||||  |||   ||||||||||||| |||||||| |||||||
seq2  TGCATCACGTAC--TAC--TCTGCTGCTCTGCA-TTCATGAT-GATCTCT  88

seq1  GGTCTTTACAACCACTGGGCTGA-GAGG-GGTCCCGCCTTTGGACAGGAG  147
       ||| ||||| |  ||||||||| |||| |||||  | ||||||||||||
seq2  -GTC-TTACACCACCTGGGCTGAGGAGGAGGTCCGCCTTTTGGACAGGAG  136

seq1  AACCACACAG-CCAAGTGGATCATCTGG-CTCTAATGAGAAGCCCTA--G  193
      | |||||||| ||||||||||||||||| ||||||||||||||||||   
seq2  ATCCACACAGCCCAAGTGGATCATCTGGCCTCTAATGAGAAGCCCTAAGA  186

seq1  AAAGTAGCC-TGTAAATGTAACTTTCATTTCCCGGATGCAGTTGTCACCT  242
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGCCTTGTAAATGTAACTTTCATTTCCCGGATGCAGTTGTCACCT  236

seq1  CCGAGGCTGACTGCCTCTGCTGCTAACACAGGCCTCGACCTGGATGCTTC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGGCTGACTGCCTCTGCTGCTAACACAGGCCTCGACCTGGATGCTTC  286

seq1  TAGCCTTTGCATAAATCTTTTATAGGCCTAGAATGCTTTCTAGGGTGAAT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTTGCATAAATCTTTTATAGGCCTAGAATGCTTTCTAGGGTGAAT  336

seq1  AAGCTCACCCTCTTTCTGAGCTCTGGGTGGCTGGTTTAACTCAGCTGTTA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCACCCTCTTTCTGAGCTCTGGGTGGCTGGTTTAACTCAGCTGTTA  386

seq1  TGGCTCAAACTCCTCTCCCAGCTGACTTATTTAATTTGGCTTTTCTTGAA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAAACTCCTCTCCCAGCTGACTTATTTAATTTGGCTTTTCTTGAA  436

seq1  GCCTCTGAATTGCTCTGCTTGGCCTCAAACTAACTCTAGCAATCTTTTCT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGAATTGCTCTGCTTGGCCTCAAACTAACTCTAGCAATCTTTTCT  486

seq1  AATCTTCTGGTTCCTTCTCATTCTCTTGCTCCTTCTGTCTTTACCCATGT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCTGGTTCCTTCTCATTCTCTTGCTCCTTCTGTCTTTACCCATGT  536

seq1  CTGGCTTGTTCTCTCTTCAATCTGTCTCTATAAAACTCTCCCAGTAACAC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTGTTCTCTCTTCAATCTGTCTCTATAAAACTCTCCCAGTAACAC  586

seq1  TGCCTCCTTCTCCCTCTCTGGGCTGCTCCACTCTCACTCTCAACTCTACT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCTTCTCCCTCTCTGGGCTGCTCCACTCTCACTCTCAACTCTACT  636

seq1  GCACTGCTCTCTACGGACTCTACTGTATTCCTGCCCTGTACTCTCTTCCT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGCTCTCTACGGACTCTACTGTATTCCTGCCCTGTACTCTCTTCCT  686

seq1  CCTGCGCTGTCTGTCTTTCCCTTAAGTAGCTTCCCTTTCCTCTCTCTTCT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCGCTGTCTGTCTTTCCCTTAAGTAGCTTCCCTTTCCTCTCTCTTCT  736

seq1  CTTGAGAGTTGGGTGTATCCTATTCTGTCAAATCTTTCTCTCATTGGTCA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAGTTGGGTGTATCCTATTCTGTCAAATCTTTCTCTCATTGGTCA  786

seq1  CTTTTTCTGTCATCCAATTAGACATCTCTTTTAAACATGCATGCTTCCTT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTGTCATCCAATTAGACATCTCTTTTAAACATGCATGCTTCCTT  836

seq1  CTACAAACTAACTTCACCGTCACTGTTTGAGATTAAAGGTGTGTGCTAAG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAACTAACTTCACCGTCACTGTTTGAGATTAAAGGTGTGTGCTAAG  886

seq1  GACTGAACCACACCCTAACCAGAGACAGATTCAGATACCCTGTAACAGTG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAACCACACCCTAACCAGAGACAGATTCAGATACCCTGTAACAGTG  936

seq1  GCCCATCTGTGAACAGACACCTTTACACGTGCACAACATCAAGAGGTCAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATCTGTGAACAGACACCTTTACACGTGCACAACATCAAGAGGTCAA  986

seq1  GAGAATGGTGAATCAGGTGTGAAAAGGCCTCAGATTTCTGGGGGCTTGTT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGGTGAATCAGGTGTGAAAAGGCCTCAGATTTCTGGGGGCTTGTT  1036

seq1  TGGGCTGCCTCTAGAGGTGAGGAGGTGACCCGAGTTGTATTTCTTGGCTC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGCCTCTAGAGGTGAGGAGGTGACCCGAGTTGTATTTCTTGGCTC  1086

seq1  TTGTTTTGGAGTTGGTTGTTTATGAGAATTC  1123
      |||||||||||||||||||||||||||||||
seq2  TTGTTTTGGAGTTGGTTGTTTATGAGAATTC  1117