BAC Information

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BAC

Clone NameB6Ng01-278C05
Chromosome5 (Build37)
Map Location 15,136,136 - 15,137,075
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d
Downstream gene4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278C05.bB6Ng01-278C05.g
ACCGA078461GA078462
length1,1591,103
definitionB6Ng01-278C05.b B6Ng01-278C05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattgtttttaatagctgagtaaatgtgtaaatgtaccatatttt
ctgtatccattcctctgctgaaggacatctgggttctttccagctcctgg
ctattaaaaataaggctgctatgaacatagtggaacatgtgtccttatta
taacatcttctggatatatatccaggagtggtatacctgggtagtatgtc
cacttttctgaggaactgccaaactgacttccagagtcgttgtaccagtt
tgcaatcccaccagcaatggcgctcttctttttgcacatccttgccagca
tctgtgatcacctgagcttctgatcttagccattctgactggtgtgaggt
ggaatctcagggtcattttgatttatgtttccctgatgactaatgatgtt
gaacatttctttaggtgcttatcagccattcaagtttcctcagttaaaac
ttctctgtttaggtctgatccccatttttaataggattatttagttctca
ggagtctaacttcatgagttctttttatatattggatattagccctctat
aggatgaaggattgataaagatcttctcccaatctgttggttgccttttt
gtcttattgacagttttctttgccttagagaagctttgcagttttatgag
gtcccattttttgattcttaatctttcagcataagccatttttgttctgt
tcaggaaatttccccccatgcccatgtgttcaaggctatagcccactttc
tcttttattagtttcagtgaatttggttttatatggtggttcttgatcca
cttggacataagctttgtacaaggagataagaatggatccatttgccttc
ttctacacgataactgccagttgaaccagcaccatttgttgaaaatgctg
tcttttttccaactgaatgggtttaccgcctttctcaaagatcaagtgac
cagaggtgtgtaagtcattctggtcttcaatctattccactgatctatcc
tgcctctctctgtaacataccataaggtttttattcactattgctcttgt
aatcagctgaagtacggatggtgaattccttgaagtcctttgttgagatt
agtttttgcttctaattttggttatccagtcattccaatgcgcgtctaat
tctatcaga
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtttggtgtcctaataaaaagaagcaaaatggtt
cgtcctcattcaagaagaggtgaaaaaaatgctttatcaaaaacaagaga
gaattaggacctctactgaaattatagttagccttccgattagactttgc
gagagcattttaggtgatatcagttccccgacgccaggaggggttatgat
tttcatgaatagtttcatctatccgttcagcaacaaaagggaaaaatcca
cttttaagctctatgaggggataaaacaccctgtctcttaaataaacttg
tgtgtgataaatactttctcagtgttttaccctcggtgctccaacaacta
ctgactcgtggagcctgtgaactgcaatggcccagaatgcttctagagtt
cagaggttcctttactgggaaaagacttcattagaaaacattctgcaaaa
tagaaagattgccttgtttttatcttaccattcaaaagtagtgtctgttt
tacacccggagttttaaagtgtgttttgtagagctcaataactttccctg
ttaatttttccaaccaaaatagtgcttttcggtgtaatcctggctgtcct
ggaactcattctgtagatcatgctagcttgaactcagagatctatccatc
tctgctcctaagtgctgggattagaggttgtgccactgtgcctggctctc
cttattaatttttcactgtctccttagattaaaaatttaataaaggagta
atttttgtatgtttcgattatttcataatttgaatctcacccactagcat
tttaaataggaaactttaaagatatttacttgtgtaataatggggagcaa
agtaaaatgctttcttgcatattcagaaacaatttgtcagatcaaagagc
atcactgacttcaataacatacattcatacatattcatgaataatatata
taa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15136136_15137075
seq2: B6Ng01-278C05.g_234_1169

seq1  TTTGGTGTCCTAATAAAAAGAAGCAAATAGGTTCGTCCTCATTCAAGAAG  50
      |||||||||||||||||||||||||||  |||||||||||||||||||||
seq2  TTTGGTGTCCTAATAAAAAGAAGCAAAATGGTTCGTCCTCATTCAAGAAG  50

seq1  AGGTGAAAAAAATGCTTTATCAAAAACAAGAGAGAATTTGGACCTCTACT  100
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGGTGAAAAAAATGCTTTATCAAAAACAAGAGAGAATTAGGACCTCTACT  100

seq1  GAAATTATAGTTAGCCTTCCGATTAGACTTTGCGAGAGCATTTTAGGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTATAGTTAGCCTTCCGATTAGACTTTGCGAGAGCATTTTAGGTGA  150

seq1  TATCAGTTCCCCGACGCCAGGAGGGGTTATGATTTTCATGAATAGTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTTCCCCGACGCCAGGAGGGGTTATGATTTTCATGAATAGTTTCA  200

seq1  TCTATCCGTTCAGCAACAAAAGGGAAAAATCCACTTTTAAGCTCTATGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCCGTTCAGCAACAAAAGGGAAAAATCCACTTTTAAGCTCTATGAG  250

seq1  GGGGAAAAACACCCTGTCTCTTAAATAAACTTGTGTGTGATAAATACTTT  300
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAAAACACCCTGTCTCTTAAATAAACTTGTGTGTGATAAATACTTT  300

seq1  CTCAGTGTTTTATCCTCAGTGCTCCAACAACTACGGACTCGTGGAGCCTG  350
      |||||||||||| |||| |||||||||||||||| |||||||||||||||
seq2  CTCAGTGTTTTACCCTCGGTGCTCCAACAACTACTGACTCGTGGAGCCTG  350

seq1  TGAACTGTAAAGGCCCAGATCTGCTTCTAGAGTTCAGAGGTTCCTTTACT  400
      ||||||| || ||||||||  |||||||||||||||||||||||||||||
seq2  TGAACTGCAATGGCCCAGA-ATGCTTCTAGAGTTCAGAGGTTCCTTTACT  399

seq1  GGG--AAGACTTCATTAGAAAACATTCTGCAAATTGGAAAGATTGCCTTG  448
      |||  |||||||||||||||||||||||||||| | ||||||||||||||
seq2  GGGAAAAGACTTCATTAGAAAACATTCTGCAAAATAGAAAGATTGCCTTG  449

seq1  TTTTTATCTTACCATTCAAAAGTAGTGTCTGTTTTACACCCGGGGTTTTA  498
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTTTATCTTACCATTCAAAAGTAGTGTCTGTTTTACACCCGGAGTTTTA  499

seq1  AAGTGTGTTTTGTAGAGCTCAATAACTTTCCCTATTAATTTTTCCCACCA  548
      ||||||||||||||||||||||||||||||||| ||||||||||| ||||
seq2  AAGTGTGTTTTGTAGAGCTCAATAACTTTCCCTGTTAATTTTTCCAACCA  549

seq1  AAACAGTGCTTTTCGGTGTAATCCTGGCTGTCCTGGAACTCATTCTGTAG  598
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTGCTTTTCGGTGTAATCCTGGCTGTCCTGGAACTCATTCTGTAG  599

seq1  ATCATGCTAGGCTTGAACTCAGAGATCTATCCATCTCTGCTCCTAAGTGC  648
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGCTA-GCTTGAACTCAGAGATCTATCCATCTCTGCTCCTAAGTGC  648

seq1  TGGGATTAGAGGTTGTGCCACTGTGCCTGGCTCTCCTTATTAATTTTTCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTAGAGGTTGTGCCACTGTGCCTGGCTCTCCTTATTAATTTTTCA  698

seq1  CTGTCTCCTTAGATTCAAAATTTAATAAAGGAGTAATTTTTTGTATGTTT  748
      ||||||||||||||| |||||||||||||||||||| |||||||||||||
seq2  CTGTCTCCTTAGATTAAAAATTTAATAAAGGAGTAA-TTTTTGTATGTTT  747

seq1  CGA-TATTTCATAA-TTGGATCTCACCCAACTAAGCATTTTAAATAGGAA  796
      ||| |||||||||| ||| ||||||||| ||| |||||||||||||||||
seq2  CGATTATTTCATAATTTGAATCTCACCC-ACT-AGCATTTTAAATAGGAA  795

seq1  ACTTTAAAGATTATTTAC-TGTGTAATAAT-AGGAGCAAAGTAAAAATGC  844
      |||||||||| ||||||| |||||||||||  |||||||||| |||||||
seq2  ACTTTAAAGA-TATTTACTTGTGTAATAATGGGGAGCAAAGT-AAAATGC  843

seq1  TTTC-TGCATA-TCAGAAAACATTTGTCAAGATCAAAGGAAGCATCCACC  892
      |||| |||||| |||||||  ||||||| |||||||||  ||||||   |
seq2  TTTCTTGCATATTCAGAAACAATTTGTC-AGATCAAAG--AGCATC--AC  888

seq1  TGACCTTCAAT-ACATACATCCATTTACATATTTATGA--TATATATATA  939
      ||| ||||||| |||||||| ||  |||||||| ||||   |||||||||
seq2  TGA-CTTCAATAACATACATTCA--TACATATTCATGAATAATATATATA  935

seq1  A  940
      |
seq2  A  936