BAC Information

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BAC

Clone NameB6Ng01-278N23
Chromosome5 (Build37)
Map Location 64,662,333 - 64,663,431
singlet/doubletsinglet
Overlap geneTbc1d1
Upstream gene3110047P20Rik, LOC100042133, 0610040J01Rik, AA536743, LOC100041636, LOC100041646, Pgm1
Downstream genePpia-ps22, LOC433894, LOC100042198, Klf3, Tlr1, Tlr6, 9130005N14Rik, Tmem156, Klhl5, Wdr19, Rfc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278N23.bB6Ng01-278N23.g
ACCGA079002GA079003
length1,087952
definitionB6Ng01-278N23.b B6Ng01-278N23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatctaaaaccaaattagaactccagaagcacttgaccacactga
ccaatcaggagcaggccaccatattcgaggaggttcaggtacagtagccg
ggaagcacagcagggagcgtgcttgtggagtgtcctgtgggtggtgagga
gtcagcggtgccaccacttcccaggggcatgagccagtgtcctgttaaaa
cctgggtagaccaggaggcaggaggccacatgctctcctttgctcctggg
agcctccgtcagtctcttcccatgaagtcacaaggcatttgtacatgggt
ttgagcacaactggcccttctgtattttttgttgtctgttttgaaaatgt
atgtgtcatatgttagagccttaaactgaaacgcaaaaatcaaaacagac
tgaaaccagcaaacacagaagcacacacatgagctgcatgcgttagacct
ggaagtctgcttttaccatgcttgaagctgctgcatctggggaaaccagg
ccacagtgtcaggcctgcctaaggcctgcttgtcaggagggagctcaaca
cggatttcatgtctgccagaacctggagccatttttgtggggttttggca
agtgcagtaagacaaagaattaatacgtctttgcgtgtgtgcatgtgtgt
gtgttgtgtgtgcccactagtgccttgtcaagttccacagttaggggcca
actaaaccagacaagcaggtagccatgcctttgttctcatccctgtgagg
gaggggatgaaaaggctcagctttctttctgttctcactaaagttcttca
gttcccttgttctgtaggcttggcatacatttgtagaaagaataggaaga
ttttgtggtgggttgttttcatttagcagatggccttgagggttgtttta
tttgcctgtgctttgcttcttattcttaatgcattgcaactgcagccaag
gccatcagtgtgaacccacttaggccacggtgctacagtcactcgagagc
atcttctgcagcagcagcagcagtaagatgcacctcccttcccttattgt
ttcacttgatgtagacagcacacggtagcttcctgag
gaattcaagaaactggataccaagaaaacaaataacccaattaaaacaca
gggtacagatataaaaacagaattttcaaaagaggaaactcaaatggcta
agaaacatttaaagaatgttcaacatgcttaattattagggaaactcaaa
tcaaaactcccttgagatttcatcttacacccattagaatggctaagatt
aatacaacaaagggcagctcatgctggtgaagatgtggagtaagaggggc
actgacccattgttggtggaagtgaaaacgtgtacagccaccatgggaat
cagggtagcggttcctcaggaagatgcgatccatctacctcaagatccag
gtatactgctgttaggcatacagtcaaatgacgcttcatccgaccagaga
cacgtgctcacccatgttcactgctgctctattcataagtcagaaactgg
aaatgaagatgcccctttgtagatgaatggattttttttaaaaagcagta
caattatgcagtagaatattacttagccattaagaaaatgaaatcaagaa
aatttcaggtaaatggaacagaattagaaaaaaaaaatcatcctatccag
gtttagtggttcacacctttaatcccagcacttgggaggcagaggcaagc
aggtctcaaggccagcctggtctacagagcaagttccagggcagccaggg
ccacatagagaaaccctgtctcggaaaatccaaatcatcctgagtaaggt
aacccagacccagcaagacaaatagtatgtgcatttgcttatttggatat
tagctgctaagtcaatagccgagctgcaatccatacaaccgcagtttata
gagtaaaggactagggagagacagacagatctttctaggaaagggaaaca
aaatagttatggatggatggggatagaacaggagggagggggagggaaga
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_64662333_64663431
seq2: B6Ng01-278N23.b_49_1135

seq1  GAATTCATCTAAAACCAAATTAGAACTCCAGAAGCACTTGACCACACTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTAAAACCAAATTAGAACTCCAGAAGCACTTGACCACACTGA  50

seq1  CCAATCAGGAGCAGGCCACCATATTCGAGGAGGTTCAGGTACAGTAGCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCAGGAGCAGGCCACCATATTCGAGGAGGTTCAGGTACAGTAGCCG  100

seq1  GGAAGCACAGCAGGGAGCGTGCTTGTGGAGTGTCCTGTGGGTGGTGAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCACAGCAGGGAGCGTGCTTGTGGAGTGTCCTGTGGGTGGTGAGGA  150

seq1  GTCAGCGGTGCCACCACTTCCCAGGGGCATGAGCCAGTGTCCTGTTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCGGTGCCACCACTTCCCAGGGGCATGAGCCAGTGTCCTGTTAAAA  200

seq1  CCTGGGTAGACCAGGAGGCAGGAGGCCACATGCTCTCCTTTGCTCCTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTAGACCAGGAGGCAGGAGGCCACATGCTCTCCTTTGCTCCTGGG  250

seq1  AGCCTCCGTCAGTCTCTTCCCATGAAGTCACAAGGCATTTGTACATGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCGTCAGTCTCTTCCCATGAAGTCACAAGGCATTTGTACATGGGT  300

seq1  TTGAGCACAACTGGCCCTTCTGTATTTTTTGTTGTCTGTTTTGAAAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCACAACTGGCCCTTCTGTATTTTTTGTTGTCTGTTTTGAAAATGT  350

seq1  ATGTGTCATATGTTAGAGCCTTAAACTGAAACGCAAAAATCAAAACAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCATATGTTAGAGCCTTAAACTGAAACGCAAAAATCAAAACAGAC  400

seq1  TGAAACCAGCAAACACAGAAGCACACACATGAGCTGCATGCGTTAGACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCAGCAAACACAGAAGCACACACATGAGCTGCATGCGTTAGACCT  450

seq1  GGAAGTCTGCTTTTACCATGCTTGAAGCTGCTGCATCTGGGGAAACCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCTGCTTTTACCATGCTTGAAGCTGCTGCATCTGGGGAAACCAGG  500

seq1  CCACAGTGTCAGGCCTGCCTAAGGCCTGCTTGTCAGGAGGGAGCTCAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTGTCAGGCCTGCCTAAGGCCTGCTTGTCAGGAGGGAGCTCAACA  550

seq1  CGGATTTCATGTCTGCCAGAACCTGGAGCCATTTTTGTGGGGTTTTGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATTTCATGTCTGCCAGAACCTGGAGCCATTTTTGTGGGGTTTTGGCA  600

seq1  AGTGCAGTAAGACAAAGAATTAATACGTCTTTGCGTGTGTGCATGTGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAGTAAGACAAAGAATTAATACGTCTTTGCGTGTGTGCATGTGTGT  650

seq1  GTGTTGTGTGTGCCCACTAGTGCCTTGTCAAGTTCCACAGTTAGGGGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGTGTGTGCCCACTAGTGCCTTGTCAAGTTCCACAGTTAGGGGCCA  700

seq1  ACTAAACCAGACAAGCAGGTAGCCATGCCTTTGTTCTCATCCCTGTGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACCAGACAAGCAGGTAGCCATGCCTTTGTTCTCATCCCTGTGAGG  750

seq1  GAGGGGATGAAAAGGCTCAGCTTTCTTTCTGTTCTCACTAAAGTTCTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGATGAAAAGGCTCAGCTTTCTTTCTGTTCTCACTAAAGTTCTTCA  800

seq1  GTTCCCTTGTTCTGTAGGCTTGGCATACATTTGTAGAAAGAATAGGAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTTGTTCTGTAGGCTTGGCATACATTTGTAGAAAGAATAGGAAGA  850

seq1  TTTTGTGGT-GGTTGTTTTCATTTAGCAGATGGCCTTGAGGGTTGTTTTA  899
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGGTGGGTTGTTTTCATTTAGCAGATGGCCTTGAGGGTTGTTTTA  900

seq1  TTTGCCTGTGCTTTGCTTCTTATTCTTAATGCATTGCAACTGCAGCCAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTGTGCTTTGCTTCTTATTCTTAATGCATTGCAACTGCAGCCAAG  950

seq1  GCCATCAGTGTGAACCCACTTAGGCCACGGTGCTACCAGGTCACTCGAGA  999
      ||||||||||||||||||||||||||||||||||||   |||||||||||
seq2  GCCATCAGTGTGAACCCACTTAGGCCACGGTGCTAC--AGTCACTCGAGA  998

seq1  GCATCTTCCTGGCAGGCAGGCAGGCAGGCAGGGAAGATGCACCTCCCTTC  1049
      ||||||||   ||| ||| ||| ||| ||| | |||||||||||||||||
seq2  GCATCTTC--TGCA-GCA-GCA-GCA-GCA-GTAAGATGCACCTCCCTTC  1041

seq1  CCTAATGGTTTTCACTTTGATGTAGACAGCACCACGTAGCTTTCCCTGAG  1099
      ||| || | |||||| ||||||||||||||||   |||||||  ||||||
seq2  CCTTATTG-TTTCAC-TTGATGTAGACAGCACACGGTAGCTT--CCTGAG  1087