BAC Information

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BAC

Clone NameB6Ng01-280B19
Chromosome5 (Build37)
Map Location 47,267,831 - 47,393,559
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666103
Downstream geneLOC100040865, LOC100040876, Slit2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280B19.bB6Ng01-280B19.g
ACCGA079923GA079924
length1,0001,110
definitionB6Ng01-280B19.b B6Ng01-280B19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,267,831 - 47,268,466)(47,392,447 - 47,393,559)
sequence
gaattcccatttctacttcttagagagagtgttatagggatattaactta
gggaactctcttcctgatggtattcacccaccctacaggtacccaggatt
tgtttctaccatgggcttacatatagatcaagaaggatgttatgatggct
attcctggttgtcatcttgactatatctgaaatgaactaacaatccagaa
attgagggcacactgtgatgcagatcttgaggctggaagacactagcttc
taacctggatattgacatggggatcttgaggcatggtggccataaaaaag
cttaggcccaagcaaggtagtacacacctttaatcccaggacactgaggc
aggcagatctctgagttcaaggtcagcctgggataaagcaagtttttttt
tttttttcattttttattaggtatttagctcatttacatttccaatgcta
taccaaaagtcccccttacccacccacccccactcccctacccacccact
ccccccctttggccctggcgttcccctgtaccggggcacacaaagtctgc
gtgtccaatgggcctctctttccagtgatggccgactaggccatcttttg
atacatatgcagctagagtcaagagctcaggggtactggttagttcataa
tgttgttccacctatagggttgaagatccctttagctccttgggtacttt
tctctagctcctccattgggagccctgtgatcccatccattagctgactg
tgagcatccaacattcttgtgttttgctaggccccggcatagttctcaca
agagacagctacatctggggtcctttcgataaaatctttgctagtatatg
caatggtgtccagcgtttggatgctgatttatgggggtggatccctggat
atgggaagtctctacaatggtccatcctttcatctcagcctccaaacttt
ggtttctgtaactccttccatgggtgtttgttcccacttctaagggaggg


gaattctgtaattacagtgagatttttttacttagggaatgaagttctct
tcccaggataaagagagctagaaatcttttcgctgagaattttgctcacc
ttgagatgtataaaatattcagccttggcttcattctatgttttaaatca
aggtgtgggatatatttagctttgctttctcttgtttaaaatatggctga
catgagtgttacaacttgaagagtgtgactagaaagaagtcagatatctg
gaaatgaaagactgcaatgagcttctaagaatccagccattcttaaccag
gcatggtggcaaacgcctttaatcccagcactctggaggcagaggtaggt
tgttttctgagttcgaggccagtctggtctatgaagtgagttccagaaca
gccaaggctacacagagaaacgctgtctttaaaaaccaaaacaaacaaac
aaacaaacaaacaaaaaaaaaaaccaaaaacctgaatccagccattctta
cccagggatagtccatgtcctggtacacccaccacagctgtgacagcttc
tttatagcctcatctatgagaaagtttaatattgtattttgaccataata
gtagtgagcttttgttcaaattgctaaaatcaaagtgaaccccagagttt
ataaaacatataagaaacaccagtaaggaataaatgtgtatgtgaatcag
ggaaggaaggagagagtgagggagaaagggcacaaagaagaataaaagct
tctcagatgtaaatattaaattttatcctgaaatgagcatagtggtggtc
actcttcaccacaaaaaacattgttgaagaaaagccaaggatcagatttt
tcatgaaccctacacatctactattaattcctggctccatagcctgtagt
cttatctaccatataaccatatggagcaataaagtcaatgtcttaacaaa
caagtgtacccttctatttcctgcaatatgatgacatggattttggagca
taataataaaagaatgctattatagctctgcattagagctgtccaacatt
aggagtttcagagactacaaacaatgttaataggaggcatctttacaggt
cccttggctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_47267831_47268466
seq2: B6Ng01-280B19.b_44_679

seq1  GAATTCCCATTTCTACTTCTTAGAGAGAGTGTTATAGGGATATTAACTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATTTCTACTTCTTAGAGAGAGTGTTATAGGGATATTAACTTA  50

seq1  GGGAACTCTCTTCCTGATGGTATTCACCCACCCTACAGGTACCCAGGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTCTCTTCCTGATGGTATTCACCCACCCTACAGGTACCCAGGATT  100

seq1  TGTTTCTACCATGGGCTTACATATAGATCAAGAAGGATGTTATGATGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTACCATGGGCTTACATATAGATCAAGAAGGATGTTATGATGGCT  150

seq1  ATTCCTGGTTGTCATCTTGACTATATCTGAAATGAACTAACAATCCAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGGTTGTCATCTTGACTATATCTGAAATGAACTAACAATCCAGAA  200

seq1  ATTGAGGGCACACTGTGATGCAGATCTTGAGGCTGGAAGACACTAGCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGGGCACACTGTGATGCAGATCTTGAGGCTGGAAGACACTAGCTTC  250

seq1  TAACCTGGATATTGACATGGGGATCTTGAGGCATGGTGGCCATAAAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTGGATATTGACATGGGGATCTTGAGGCATGGTGGCCATAAAAAAG  300

seq1  CTTAGGCCCAAGCAAGGTAGTACACACCTTTAATCCCAGGACACTGAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGCCCAAGCAAGGTAGTACACACCTTTAATCCCAGGACACTGAGGC  350

seq1  AGGCAGATCTCTGAGTTCAAGGTCAGCCTGGGATAAAGCAAGTTTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGATCTCTGAGTTCAAGGTCAGCCTGGGATAAAGCAAGTTTTTTTT  400

seq1  TTTTTTTCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTA  450

seq1  TACCAAAAGTCCCCCTTACCCACCCACCCCCACTCCCCTACCCACCCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAAAGTCCCCCTTACCCACCCACCCCCACTCCCCTACCCACCCACT  500

seq1  CCCCCCCTTTGGCCCTGGCGTTCCCCTGTACCGGGGCACACAAAGTCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCTTTGGCCCTGGCGTTCCCCTGTACCGGGGCACACAAAGTCTGC  550

seq1  GTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTG  600

seq1  ATACATATGCAGCTAGAGTCAAGAGCTCAGGGGTAC  636
      ||||||||||||||||||||||||||||||||||||
seq2  ATACATATGCAGCTAGAGTCAAGAGCTCAGGGGTAC  636


seq1: chr5_47392447_47393559
seq2: B6Ng01-280B19.g_65_1174 (reverse)

seq1  AAGCC-AGGGAACTGTAAAGATGCCTCCTA-TAACATTGTTTGTAGTCTC  48
      ||||| ||||| |||||||||||||||||| |||||||||||||||||||
seq2  AAGCCAAGGGACCTGTAAAGATGCCTCCTATTAACATTGTTTGTAGTCTC  50

seq1  TGAAACT-CTAATG-TGGACAGGCTCTAATGCAGAAGCTATAATTAGCAT  96
      ||||||| |||||| |||||| |||||||||||| |||||||| ||||||
seq2  TGAAACTCCTAATGTTGGACA-GCTCTAATGCAG-AGCTATAA-TAGCAT  97

seq1  TC-TTTATTATTATGCTTCCAAAATTCCATGTCATCATATTTGCAGGAAA  145
      || ||||||||||||| ||||||| |||||||||||||| ||||||||||
seq2  TCTTTTATTATTATGC-TCCAAAA-TCCATGTCATCATA-TTGCAGGAAA  144

seq1  TAGAAGGGTACCACTTGTTTTGTTAAGACATTGACTTTATTGCTCCATAT  195
      |||||||||| |||||| ||||||||||||||||||||||||||||||||
seq2  TAGAAGGGTA-CACTTG-TTTGTTAAGACATTGACTTTATTGCTCCATAT  192

seq1  GGTTATATGGTAGATAAGACTACAGGCTATGGAGCCAGGAATTAATAGTA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATATGGTAGATAAGACTACAGGCTATGGAGCCAGGAATTAATAGTA  242

seq1  GATGTGTAGGGTTCATGAAAAATCTGATCCTTGGCTTTTCTTCAACAATG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTAGGGTTCATGAAAAATCTGATCCTTGGCTTTTCTTCAACAATG  292

seq1  TTTTTTGTGGTGAAGAGTGACCACCACTATGCTCATTTCAGGATAAAATT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTGGTGAAGAGTGACCACCACTATGCTCATTTCAGGATAAAATT  342

seq1  TAATATTTACATCTGAGAAGCTTTTATTCTTCTTTGTGCCCTTTCTCCCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTACATCTGAGAAGCTTTTATTCTTCTTTGTGCCCTTTCTCCCT  392

seq1  CACTCTCTCCTTCCTTCCCTGATTCACATACACATTTATTCCTTACTGGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCTCCTTCCTTCCCTGATTCACATACACATTTATTCCTTACTGGT  442

seq1  GTTTCTTATATGTTTTATAAACTCTGGGGTTCACTTTGATTTTAGCAATT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTATATGTTTTATAAACTCTGGGGTTCACTTTGATTTTAGCAATT  492

seq1  TGAACAAAAGCTCACTACTATTATGGTCAAAATACAATATTAAACTTTCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAAAAGCTCACTACTATTATGGTCAAAATACAATATTAAACTTTCT  542

seq1  CATAGATGAGGCTATAAAGAAGCTGTCACAGCTGTGGTGGGTGTACCAGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATGAGGCTATAAAGAAGCTGTCACAGCTGTGGTGGGTGTACCAGG  592

seq1  ACATGGACTATCCCTGGGTAAGAATGGCTGGATTCAGGTTTTTGGTTTTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGACTATCCCTGGGTAAGAATGGCTGGATTCAGGTTTTTGGTTTTT  642

seq1  TTTTTTGTTTGTTTGTTTGTTTGTTTGTTTTGGTTTTTAAAGACAGCGTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTTGTTTGTTTGTTTGTTTGTTTTGGTTTTTAAAGACAGCGTT  692

seq1  TCTCTGTGTAGCCTTGGCTGTTCTGGAACTCACTTCATAGACCAGACTGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGTAGCCTTGGCTGTTCTGGAACTCACTTCATAGACCAGACTGG  742

seq1  CCTCGAACTCAGAAAACAACCTACCTCTGCCTCCAGAGTGCTGGGATTAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGAACTCAGAAAACAACCTACCTCTGCCTCCAGAGTGCTGGGATTAA  792

seq1  AGGCGTTTGCCACCATGCCTGGTTAAGAATGGCTGGATTCTTAGAAGCTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGTTTGCCACCATGCCTGGTTAAGAATGGCTGGATTCTTAGAAGCTC  842

seq1  ATTGCAGTCTTTCATTTCCAGATATCTGACTTCTTTCTAGTCACACTCTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGTCTTTCATTTCCAGATATCTGACTTCTTTCTAGTCACACTCTT  892

seq1  CAAGTTGTAACACTCATGTCAGCCATATTTTAAACAAGAGAAAGCAAAGC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTGTAACACTCATGTCAGCCATATTTTAAACAAGAGAAAGCAAAGC  942

seq1  TAAATATATCCCACACCTTGATTTAAAACATAGAATGAAGCCAAGGCTGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATATCCCACACCTTGATTTAAAACATAGAATGAAGCCAAGGCTGA  992

seq1  ATATTTTATACATCTCAAGGTGAGCAAAATTCTCAGCGAAAAGATTTCTA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTATACATCTCAAGGTGAGCAAAATTCTCAGCGAAAAGATTTCTA  1042

seq1  GCTCTCTTTATCCTGGGAAGAGAACTTCATTCCCTAAGTAAAAAAATCTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTTTATCCTGGGAAGAGAACTTCATTCCCTAAGTAAAAAAATCTC  1092

seq1  ACTGTAATTACAGAATTC  1113
      ||||||||||||||||||
seq2  ACTGTAATTACAGAATTC  1110


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