BAC Information

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BAC

Clone NameB6Ng01-280G14
Chromosome5 (Build37)
Map Location 31,542,143 - 31,713,386
singlet/doubletdoublet
Overlap geneENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr
Upstream geneEG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g
Downstream geneZfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre, Fosl2, LOC672217, Plb1, EG665350
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280G14.bB6Ng01-280G14.g
ACCGA080144GA080145
length9571,049
definitionB6Ng01-280G14.b B6Ng01-280G14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,542,143 - 31,543,085)(31,712,335 - 31,713,386)
sequence
gaattctattttgtcttgacacagtgttgttgctctattgcttatgctga
ccttgaactcacggcattagcctactgagtgataggattacaggtatgca
ttactatgctgggtgaaaaaaaaagtttgtttttgagactatgtagccct
ggttggccttgaattcacagagatctctctggcatgcttgttgaaatttc
agtttttaaagcaagcattttaaagtgaagagatgagaaaaaaatgagtc
tctataggatttctgtgtgaacccgtgaactaggattaactagtcccttt
aaggagagtaaaattggtgattgtgacattctcagattcagatgattcat
ccttcttccttgataatacatgtataatggtattatacatctcttaaatt
ctgcctttaactttctaagatcaatggcttacccagaatctattgtaatt
ctttacactcacagacaatgtaaactctttccaaataataccttttcaaa
gacagttttgatggatcttcttacttcggattctattttggactcatgtc
aacttaaatttgagtaactttttttttttgttttgttttgtttctttttc
gaatttgccaactatcattggataacttcaatgagttctcccttatgtgg
gtcgaatcaggttatgtctgggtaaataatgttatgcaaatcagcaacta
ttagttttcatgttaagcgatttaaaaaaaagctttctgaaaatttgatg
accagtgcacttgtctcttttcccaaatggggaatgtgggtgggttcgtt
cctcagattgaaaggctgcgtctttcccgttccttttgtcttcttagagg
attaggactgtcattggcgctttcaagaagagataagaaagcctttcctt
ttcgtccggcagaattaacttggggggcaccttcgactggggaggaggga
tggacag
gaattcacagaaagcaccgaattgacattgcctgaatttgataataccca
ggggaccattgtagaatcatattcagaaatgggatctcaggggtcgtatc
tagaaccaagagtgcaaattgaggaatcagagtcattggtagaaaaaaac
cactgaaccatctagactagttatagaacctatagagttaactacaggac
ccacaacacatattatagatgcgatcccaaggccacagctccacaatgta
aagtctatgcaaatagatacaggactagagttacaaagtgagctatctgt
ggatttagtacaacagaaatctctaggagtgttagatcctgaaaaggcaa
aaccagagccagatcttcagagtttatcaccaaagaagttggttgagggg
acacagattccaactgtgaaatccgtggatttgaatttgggccaagaaca
gccagttgtcaaatcaccattgattccagggctacacctgcaaagtgtca
gatttccaaagttatatcaagggcaacttcttcaaggggaaaatccagca
aattctatctcggggtccccacattataatttgaaatctgatgaagcaat
atcatatttcccagtacaagaaatcaggtcatctggttttattccagggc
caaaggttctagaaccacatctacaacatgtgaaatctactgaagtaaat
ctaggaccatgtttgcaagatgtgagattttctgagtcgatgccaaaacc
taagcaccatggcttcaaatatacacagctcatacaaggtttctgcttca
agagaggacatctcagggatttatgccagaatcattttggccataagcca
agagccaaagttcaaagataggaagcttgctctgactacacaaggatctg
aatttcacaacatgaaatttacaacacaagccactgaactacagcatcca
ctgtgatatctggaggatgtcagcacaggactttgggaaccagttaccaa
attttctgagctggcctccaggaacgagacttcagagatcaatttgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_31542143_31543085
seq2: B6Ng01-280G14.b_46_1002

seq1  GAATTCTATTTTGTCTTGACACAGTGTTGTTGCTCTATTGCTTATGCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTTTGTCTTGACACAGTGTTGTTGCTCTATTGCTTATGCTGA  50

seq1  CCTTGAACTCACGGCATTAGCCTACTGAGTGATAGGATTACAGGTATGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAACTCACGGCATTAGCCTACTGAGTGATAGGATTACAGGTATGCA  100

seq1  TTACTATGCTGGGTGAAAAAAAAAGTTTGTTTTTGAGACTATGTAGCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATGCTGGGTGAAAAAAAAAGTTTGTTTTTGAGACTATGTAGCCCT  150

seq1  GGTTGGCCTTGAATTCACAGAGATCTCTCTGGCATGCTTGTTGAAATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGCCTTGAATTCACAGAGATCTCTCTGGCATGCTTGTTGAAATTTC  200

seq1  AGTTTTTAAAGCAAGCATTTTAAAGTGAAGAGATGAGAAAAAAATGAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTAAAGCAAGCATTTTAAAGTGAAGAGATGAGAAAAAAATGAGTC  250

seq1  TCTATAGGATTTCTGTGTGAACCCGTGAACTAGGATTAACTAGTCCCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGGATTTCTGTGTGAACCCGTGAACTAGGATTAACTAGTCCCTTT  300

seq1  AAGGAGAGTAAAATTGGTGATTGTGACATTCTCAGATTCAGATGATTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAGTAAAATTGGTGATTGTGACATTCTCAGATTCAGATGATTCAT  350

seq1  CCTTCTTCCTTGATAATACATGTATAATGGTATTATACATCTCTTAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTCCTTGATAATACATGTATAATGGTATTATACATCTCTTAAATT  400

seq1  CTGCCTTTAACTTTCTAAGATCAATGGCTTACCCAGAATCTATTGTAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTTAACTTTCTAAGATCAATGGCTTACCCAGAATCTATTGTAATT  450

seq1  CTTTACACTCACAGACAATGTAAACTCTTTCCAAATAATACCTTTTCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACACTCACAGACAATGTAAACTCTTTCCAAATAATACCTTTTCAAA  500

seq1  GACAGTTTTGATGGATCTTCTTACTTCGGATTCTATTTTGGACTCATGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTTTTGATGGATCTTCTTACTTCGGATTCTATTTTGGACTCATGTC  550

seq1  AACTTAAATTTGAGTAACTTTTTTTTTTTGTTTTGTTTTGTTTCTTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAATTTGAGTAACTTTTTTTTTTTGTTTTGTTTTGTTTCTTTTTC  600

seq1  GAATTTGCCAACTATCATTGGATAACTTCAATGAGTTCTCCCTTATGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGCCAACTATCATTGGATAACTTCAATGAGTTCTCCCTTATGTGG  650

seq1  GTCGAATCAGGTTATGTCTGGGTAAATAATGTTATGCAAATCAGCAACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGAATCAGGTTATGTCTGGGTAAATAATGTTATGCAAATCAGCAACTA  700

seq1  TTAGTTTTCATGTTAAGCGA-TTAAAAAAAAGCTTTCTGAAAATTTGATG  749
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTAGTTTTCATGTTAAGCGATTTAAAAAAAAGCTTTCTGAAAATTTGATG  750

seq1  ACCAGTGCAC-TGTCTC-TTTCCCAAATGGGGAATGTGGGTGGGTTCGTT  797
      |||||||||| |||||| ||||||||||||||||||||||||||||||||
seq2  ACCAGTGCACTTGTCTCTTTTCCCAAATGGGGAATGTGGGTGGGTTCGTT  800

seq1  CCTCAGATTGAAAGGCTGCGTCTT--CCGTTCCTTTTGTCTTCTTAGAGG  845
      ||||||||||||||||||||||||  ||||||||||||||||||||||||
seq2  CCTCAGATTGAAAGGCTGCGTCTTTCCCGTTCCTTTTGTCTTCTTAGAGG  850

seq1  ATTAGGACTGTCA-TGGCGCTTTCAAGAAGAGA-GAGAAGGCCTT--CCT  891
      ||||||||||||| |||||||||||||||||||  |||| |||||  | |
seq2  ATTAGGACTGTCATTGGCGCTTTCAAGAAGAGATAAGAAAGCCTTTCCTT  900

seq1  TTCGTCCGGCAGAATT-ACTT-GGGGGCACC-TCGACT-GGGAGGA-GGA  936
      |||||||||||||||| |||| ||||||||| |||||| ||||||| |||
seq2  TTCGTCCGGCAGAATTAACTTGGGGGGCACCTTCGACTGGGGAGGAGGGA  950

seq1  TGGACAG  943
      |||||||
seq2  TGGACAG  957

seq1: chr5_31712335_31713386
seq2: B6Ng01-280G14.g_69_1117 (reverse)

seq1  CCCCAAATTTGATCTCTTGAAGTCTC-TGTCTTGAAGCCAGCTCAGAAAA  49
      ||||||| |||||||| ||||||||| |  || || ||||||||||||||
seq2  CCCCAAA-TTGATCTC-TGAAGTCTCGTTCCTGGAGGCCAGCTCAGAAAA  48

seq1  TTTGGTAACTTGTTCCCGAGGTCCTGTGCTGACATCCT-CAGATATCACA  98
      |||||||||| |||||| | |||||||||||||||||| |||||||||||
seq2  TTTGGTAACTGGTTCCCAAAGTCCTGTGCTGACATCCTCCAGATATCACA  98

seq1  TGTGGATGCTGTAGTTCAGTGGCTTGTGTTGTAAATTTCATGTTGTGAAA  148
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GTGGATGCTGTAGTTCAGTGGCTTGTGTTGTAAATTTCATGTTGTGAAA  147

seq1  TTCAGATCCTTGTGTAGTCAGAGCAAGCTTCCTATCTTTGAACTTTGGCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATCCTTGTGTAGTCAGAGCAAGCTTCCTATCTTTGAACTTTGGCT  197

seq1  CTTGGCTTAATGGCCAAAATGATTCTGGCATAAATCCCTGAGATGTCCTC  248
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTT-ATGGCCAAAATGATTCTGGCATAAATCCCTGAGATGTCCTC  246

seq1  TCTTGAAGCAGAAAACCTTGTATGAGCTGTGTATATTTGAAGCCATGGTG  298
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAGCAG-AAACCTTGTATGAGCTGTGTATATTTGAAGCCATGGTG  295

seq1  CTTAGGTTTTGGCATCGACTCAGAAAATCTCACATCTTGCAAACATGGTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGTTTTGGCATCGACTCAGAAAATCTCACATCTTGCAAACATGGTC  345

seq1  CTAGATTTACTTCAGTAGATTTCACATGTTGTAGATGTGGTTCTAGAACC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATTTACTTCAGTAGATTTCACATGTTGTAGATGTGGTTCTAGAACC  395

seq1  TTTGGCCCTGGAATAAAACCAGATGACCTGATTTCTTGTACTGGGAAATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCCCTGGAATAAAACCAGATGACCTGATTTCTTGTACTGGGAAATA  445

seq1  TGATATTGCTTCATCAGATTTCAAATTATAATGTGGGGACCCCGAGATAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTGCTTCATCAGATTTCAAATTATAATGTGGGGACCCCGAGATAG  495

seq1  AATTTGCTGGATTTTCCCCTTGAAGAAGTTGCCCTTGATATAACTTTGGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCTGGATTTTCCCCTTGAAGAAGTTGCCCTTGATATAACTTTGGA  545

seq1  AATCTGACACTTTGCAGGTGTAGCCCTGGAATCAATGGTGATTTGACAAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGACACTTTGCAGGTGTAGCCCTGGAATCAATGGTGATTTGACAAC  595

seq1  TGGCTGTTCTTGGCCCAAATTCAAATCCACGGATTTCACAGTTGGAATCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTTCTTGGCCCAAATTCAAATCCACGGATTTCACAGTTGGAATCT  645

seq1  GTGTCCCCTCAACCAACTTCTTTGGTGATAAACTCTGAAGATCTGGCTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCCCTCAACCAACTTCTTTGGTGATAAACTCTGAAGATCTGGCTCT  695

seq1  GGTTTTGCCTTTTCAGGATCTAACACTCCTAGAGATTTCTGTTGTACTAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGCCTTTTCAGGATCTAACACTCCTAGAGATTTCTGTTGTACTAA  745

seq1  ATCCACAGATAGCTCACTTTGTAACTCTAGTCCTGTATCTATTTGCATAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACAGATAGCTCACTTTGTAACTCTAGTCCTGTATCTATTTGCATAG  795

seq1  ACTTTACATTGTGGAGCTGTGGCCTTGGGATCGCATCTATAATATGTGTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACATTGTGGAGCTGTGGCCTTGGGATCGCATCTATAATATGTGTT  845

seq1  GTGGGTCCTGTAGTTAACTCTATAGGTTCTATAACTAGTCTAGATGGTTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTCCTGTAGTTAACTCTATAGGTTCTATAACTAGTCTAGATGGTTC  895

seq1  AGTGGTTTTTTTCTACCAATGACTCTGATTCCTCAATTTGCACTCTTGGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTTTTTTCTACCAATGACTCTGATTCCTCAATTTGCACTCTTGGT  945

seq1  TCTAGATACGACCCCTGAGATCCCATTTCTGAATATGATTCTACAATGGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATACGACCCCTGAGATCCCATTTCTGAATATGATTCTACAATGGT  995

seq1  CCCCTGGGTATTATCAAATTCAGGCAATGTCAATTCGGTGCTTTCTGTGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGGTATTATCAAATTCAGGCAATGTCAATTCGGTGCTTTCTGTGA  1045

seq1  ATTC  1052
      ||||
seq2  ATTC  1049