BAC Information

Click to search

BAC

Clone NameB6Ng01-281M14
Chromosome5 (Build37)
Map Location 40,320,255 - 40,321,404
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384174, Hs3st1, EG665839
Downstream geneLOC100040502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281M14.bB6Ng01-281M14.g
ACCGA081174GA081175
length9501,157
definitionB6Ng01-281M14.b B6Ng01-281M14.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcagcttagttctatacccttttttttttttcttttgattgggt
tgtttggttttttaagtgattaacttcttgagttctttatatattttgga
tattagccttctatcagatgtggggttagtgaagtttttttgttttttgt
ttttttgtttttttttttccaatctgtaggttgccaatttgtcttaatga
ttatgtcctttgtcttacagaagctttccagtttcatgagttcctattta
tcaattcttgatcttagagcatgagccattggagttttgtttaggaaatt
tctccctgtgctaatgagtttaaggctctttcccatgttctcttctatta
gattcagtgtatctggatttatgttgaggtccttgatcacttggacttga
gctttgtgtaaaatgataactacatacagacagccagttaaaccaacacc
atttattgaaaaggatttctttttttccattgtatatttttggtatcttt
gtcaaagatcaagcgacaatatgtatgtggttttattttttggtctttaa
tttgattccactgatcaatgtgtctgtctctgtacaaataccatggaatt
tttatcactattgctcttcagtaaagtgtgagttcagagatgttgattct
ctcagctgttctttactgttaagatttttatattttattgacattttatg
tttcttacccttcttcgaattagatgtagccatgcaacaagtgcttttgg
cttacactacatcaatttttttttttttaactgaaaagtaagttgcattg
attgattgattgatttaatcatagaatctgttcatgtttcccaaagcact
gttgtgttttttccaataaattaattttatttattactgggtacaataaa
aatcaaagcattgattctactctaatgtggtgccctggtcatattctaat


gaattctttccctactgttttgagacataggcttgctatgcagtctaaga
caggcccaatctcatcatgtagatttaaagaagccagaaactaaagagat
atacttcaggaactacaggcaagaagtcatctaaaaaatgaccttaggaa
ttaatttattatcaccgtactataaaattcttcaaagatctcaagaatca
gtgtatttttcattaggaagattgcagaacatttgatgttggtagccaga
gtggagttttaaagagaagatactcttttatattcctctcattaagaggt
gggttctgtctctgtgatctcctttttctcagagtataggtagaaataag
aacacttttgggttttcttgcctacattagaagttggcagttctttatct
agcttgtgaaatggctgtccttgatttcagaaaacacaatgtgaaaaagc
acaggatagctgaatctaagcaagtatacatctcttcattctttgccctt
gactatggctgtgacaccagctgcttgagtttctgacctggattcttcag
tggtggactgttacctagaaatgtaaaccaaatgtcttttgtttattcag
catcataaatgattttagaaaagcagctatagattataggtaactgaagg
aaggacataggtgtgctcatattttattagtcacaactgattcttcagcc
tcaactgaccagaaaccgtaagtttgtagtacaaaatatcacacaagtgg
cctttgcagagtcctttgatttcctctgaaacttttacaagccgtgcctc
tgctttctgtatctcccttagcatttgcatcttctaaatttccataggga
tctcagtgagctctgcacactaaataacctatttccactccaaatctcaa
aacatcataacaaaataaagctaaactaaacaaaacaccaacatggtcag
gtcttgttacagaaatgccttattctctgaaattgatgtatttcctaatt
ttccctatgctatttatgaaaccatttgacaaaaagtcaactttgagagc
aaagcttcacctttccaccttattaatccatcaccataggagagtcatgg
cagaaggtccagggcagaaacctggaaatagaaaataaagttaaggccat
gttgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_40320255_40321404
seq2: B6Ng01-281M14.g_70_1226

seq1  GAATTCTTTCCCTACTGTTTTGAGACATAGGCTTGCTATGCAGTCTAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCCTACTGTTTTGAGACATAGGCTTGCTATGCAGTCTAAGA  50

seq1  CAGGCCCAATCTCATCATGTAGATTTAAAGAAGCCAGAAACTAAAGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCCAATCTCATCATGTAGATTTAAAGAAGCCAGAAACTAAAGAGAT  100

seq1  ATACTTCAGGAACTACAGGCAAGAAGTCATCTAAAAAATGACCTTAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTCAGGAACTACAGGCAAGAAGTCATCTAAAAAATGACCTTAGGAA  150

seq1  TTAATTTATTATCACCGTACTATAAAATTCTTCAAAGATCTCAAGAATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTATTATCACCGTACTATAAAATTCTTCAAAGATCTCAAGAATCA  200

seq1  GTGTATTTTTCATTAGGAAGATTGCAGAACATTTGATGTTGGTAGCCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTTTTCATTAGGAAGATTGCAGAACATTTGATGTTGGTAGCCAGA  250

seq1  GTGGAGTTTTAAAGAGAAGATACTCTTTTATATTCCTCTCATTAAGAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGTTTTAAAGAGAAGATACTCTTTTATATTCCTCTCATTAAGAGGT  300

seq1  GGGTTCTGTCTCTGTGATCTCCTTTTTCTCAGAGTATAGGTAGAAATAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTGTCTCTGTGATCTCCTTTTTCTCAGAGTATAGGTAGAAATAAG  350

seq1  AACACTTTTGGGTTTTCTTGCCTACATTAGAAGTTGGCAGTTCTTTATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTTTGGGTTTTCTTGCCTACATTAGAAGTTGGCAGTTCTTTATCT  400

seq1  AGCTTGTGAAATGGCTGTCCTTGATTTCAGAAAACACAATGTGAAAAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTGAAATGGCTGTCCTTGATTTCAGAAAACACAATGTGAAAAAGC  450

seq1  ACAGGATAGCTGAATCTAAGCAAGTATACATCTCTTCATTCTTTGCCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATAGCTGAATCTAAGCAAGTATACATCTCTTCATTCTTTGCCCTT  500

seq1  GACTATGGCTGTGACACCAGCTGCTTGAGTTTCTGACCTGGATTCTTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATGGCTGTGACACCAGCTGCTTGAGTTTCTGACCTGGATTCTTCAG  550

seq1  TGGTGGACTGTTACCTAGAAATGTAAACCAAATGTCTTTTGTTTATTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGACTGTTACCTAGAAATGTAAACCAAATGTCTTTTGTTTATTCAG  600

seq1  CATCATAAATGATTTTAGAAAAGCAGCTATAGATTATAGGTAACTGAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATAAATGATTTTAGAAAAGCAGCTATAGATTATAGGTAACTGAAGG  650

seq1  AAGGACATAGGTGTGCTCATATTTTATTAGTCACAACTGATTCTTCAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACATAGGTGTGCTCATATTTTATTAGTCACAACTGATTCTTCAGCC  700

seq1  TCAACTGACCAGAAACCGTAAGTTTGTAGTACAAAATATCACACAAGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTGACCAGAAACCGTAAGTTTGTAGTACAAAATATCACACAAGTGG  750

seq1  CCTTTGCAGAGTCC-TTGATTTCCTCTGAAAC-TTTACAAGCCGTGCCTC  798
      |||||||||||||| ||||||||||||||||| |||||||||||||||||
seq2  CCTTTGCAGAGTCCTTTGATTTCCTCTGAAACTTTTACAAGCCGTGCCTC  800

seq1  TGCTTTCTGTATCTCCCTTAGCATTTGCATCTTCTAAATTTCCATA-GGA  847
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGCTTTCTGTATCTCCCTTAGCATTTGCATCTTCTAAATTTCCATAGGGA  850

seq1  TCTCAGTGAGCTCTGCACACTAAATAACCTA-TTCCACTCCAAATCTCAA  896
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCTCAGTGAGCTCTGCACACTAAATAACCTATTTCCACTCCAAATCTCAA  900

seq1  AACATCATAACAAAATAAAGCTAAACTAAACAAAAACACCAACATGGTCA  946
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AACATCATAACAAAATAAAGCTAAACTAAAC-AAAACACCAACATGGTCA  949

seq1  GGTC-TGTTACAGAAATGCCTTATTCTCTGAAATTGATGTATTTCCTAAT  995
      |||| |||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGTCTTGTTACAGAAATGCCTTATTCTCTGAAATTGATGTATTTCCTAA-  998

seq1  TTTTCCCTATTGCTA-TTATGAAA-CAATTGACAAAAAGTCAAC-TTGAG  1042
      ||||||||| ||||| |||||||| || |||||||||||||||| |||||
seq2  TTTTCCCTA-TGCTATTTATGAAACCATTTGACAAAAAGTCAACTTTGAG  1047

seq1  GAAGCAAAGGCTTCACC-TTCCACCTTAT--ATCCATCA-CATAGGAGAG  1088
        |||||| |||||||| |||||||||||  |||||||| ||||||||||
seq2  --AGCAAA-GCTTCACCTTTCCACCTTATTAATCCATCACCATAGGAGAG  1094

seq1  TCATGGCAGAA-GCCCAGGGCAAGAACCTGGAAATAGAAAATAAAGTTAA  1137
      ||||||||||| | ||||||||  ||||||||||||||||||||||||||
seq2  TCATGGCAGAAGGTCCAGGGCAGAAACCTGGAAATAGAAAATAAAGTTAA  1144

seq1  GGCCATGTTGTTT  1150
      |||||||||||||
seq2  GGCCATGTTGTTT  1157


| Home | SequenceCutter | Blast | Download |