BAC Information

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BAC

Clone NameB6Ng01-288M12
Chromosome5 (Build37)
Map Location 13,876,863 - 13,878,035
singlet/doubletsinglet
Overlap geneLOC384149
Upstream geneLOC433845, LOC625989, LOC670717, Sema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085
Downstream geneLOC384148, Sema3e, LOC100042957, Pclo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288M12.bB6Ng01-288M12.g
ACCGA086358GA086359
length1,1771,192
definitionB6Ng01-288M12.b B6Ng01-288M12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaggtcttttaggtagggatgagctgccagaatctggtctatctt
ccgttttttgctcagagtcagggaagatgttcagcaacacctccctcagc
tcgcttgtctctgcagaatatctctgggccagctcagaaaggttctgctg
cattcttggaaaggtggccatggatgtggaatgaggctgctgaggaagcc
aagggttggaagctgctctatgggtccagggtggagcctcgtggctcgtg
ttgactccctgggtgttgtggctccggaagccagggccagatgtgtccac
acttggttgggcgttgattcttggatgcatgtctctaagaaaggtctcct
tttgaaaaaattcatcatgccgaggtccatttcttcccagagggtcatca
ggaaccataaatatgtcccccacgaaagtgtacggaagcagtcttgtttt
actaatttctctccaggacaccgactctgtcacaaactctctcaagttat
catttgttacaattataccctcagtcttgtctgctaagtgaagcaagaac
ctgtcttcatgagaagcaattctttgccctaagaccttccgggcaggagt
taaagctaatatcccaaggtcctggagctggcttaagaagtgctgttctg
tggcattaggatccagacttgttctccactgtgggacaaacacagtgatg
tttctgttgccgagcttccaaaaatattcaactgcaagctctatgcctcg
tcagctaaagaactttttcagaccatgggtgatggcaacgttactgccgt
ctataacaatatgcttcaaatcgtcccttcttggttcatttttttaagtc
cagttcatatggtattttcaaatatgggtatttgcaaatacagcattaca
aagattttagaagaaaaactccaactcaagaaggttgactatattccaag
aaaaacacaggaaattaattcagagcaggaaaaaaaaaaagaggtaaaca
gacacacatacttacacacgcacactctactcaccaacacgacaacaaca
gcacaccacacacgataaccaccactaccaccgattagcaccgtcatcca
acaccttctatcaaaattaacaggtaataacaattgtttgtcatcagtat
tcttgcaacatcgaacaatcgatggac
gaattctcacctgaggaataccgaatttctgagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgtaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatgactaagatcaaaaattcaggtgacaga
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcagttcctta
gaaaattggacaaaatactactgtaagatcccgcaatacctctcctgggt
atatatccagaagatgtcccaaccggtaagaaggacatattctccactat
gttcatagcagccttatttataatagccagaagctgaaaagaacccagat
gtccctcgacagaggaatggatacaaaaaatgtggtacttttacacaatg
gattactactcagccattaaaaagaatgaatttatgaaattcttaggcaa
atggatggacctggagggcgtcatcctgagtgaggtaacacgatcacaaa
agaactcaaacgatatgtacttactgataagtggatattagcccagaaac
ttagtatacccgagatataagatacaatttgcaaagcacatgaaactgaa
gaggaacgaagaccaaagtttggatactttgccccttcttagaattggaa
acaatcacccatggaaggagttacagagacaaagtttggagctgagacaa
aagaatggatcatctagagactgtcatatccagggatgcatcccataatt
atcctccaaatgatgacagcattgcatacactagcaagcgttggctgaaa
ggaccctgatatagctgtctcttgtgagtctaggcccgggacctagcaaa
cacataagtggatgctcacagtcagctattgggatgggtcacacggcccc
aatggaggagctagagaaagtatcccaaggagctaagagatctgcaaccc
tgttaggtgcaacaacattatgaacttaccagtacccggagctcttgact
ctagctgcatattgtatcaaagatggcctagtcggccattcattgaagag
agccatttggacaccgcaactttatttgactcagtacgaggtaacaccat
ggttctaaatatgtgggcaatacgtgtgggggtaagatagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_13876863_13878035
seq2: B6Ng01-288M12.b_49_1225 (reverse)

seq1  GTCCATCGA-TGTTCGATGTT-CAAAGATACTGATGACCAAACATTGTTA  48
      ||||||||| ||||||||||| |||  ||||||||||| ||  |||||||
seq2  GTCCATCGATTGTTCGATGTTGCAAGAATACTGATGACAAACAATTGTTA  50

seq1  ATTACTGTT-ATTTTGATAGATGTTGTTGTGATGATGGTGCT-ATTGGTG  96
       |  ||||| ||||||||||| | ||||| ||||| |||||| || ||||
seq2  TTACCTGTTAATTTTGATAGAAGGTGTTG-GATGACGGTGCTAATCGGTG  99

seq1  GTAGTGGTGGTTATGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGT  146
      |||||||||||||| |||   ||||| ||| | || || || ||| ||||
seq2  GTAGTGGTGGTTATCGTG--TGTGGT-GTGCT-GTTGTTGTCGTGTTGGT  145

seq1  GTGT-GTGTGTGTGTGTGTATGTATGTGTGTCTGTTTTACTTCTTTTTTT  195
      | || | ||||| ||||||| ||||||||||||||||  ||  |||||||
seq2  GAGTAGAGTGTGCGTGTGTAAGTATGTGTGTCTGTTTACCTCTTTTTTTT  195

seq1  TTTCCTGCTCTGAATTAATTTCCTGTG-TTTTCTTGG-ATATAGTCAACC  243
      ||||||||||||||||||||||||||| ||||||||| ||||||||||||
seq2  TTTCCTGCTCTGAATTAATTTCCTGTGTTTTTCTTGGAATATAGTCAACC  245

seq1  TTCTTGAGTTGGAGTTTTTCTTCTAAAATCTTTGTAATGCTGTATTTGCA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAGTTGGAGTTTTTCTTCTAAAATCTTTGTAATGCTGTATTTGCA  295

seq1  AATA-CCATATTTGAAAATACCATATGAACTGGACTT-AAAAAATGAACC  341
      |||| |||||||||||||||||||||||||||||||| ||||||||||||
seq2  AATACCCATATTTGAAAATACCATATGAACTGGACTTAAAAAAATGAACC  345

seq1  AAGAAGGGACGATTTGAAGCATATTGTTATAGACGGCAGTAACGTTGCCA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGGACGATTTGAAGCATATTGTTATAGACGGCAGTAACGTTGCCA  395

seq1  TCACCCATGGTCTGAAAAAGTTCTTTAGCTGACGAGGCATAGAGCTTGCA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCATGGTCTGAAAAAGTTCTTTAGCTGACGAGGCATAGAGCTTGCA  445

seq1  GTTGAATATTTTTGGAAGCTCGGCAACAGAAACATCACTGTGTTTGTCCC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAATATTTTTGGAAGCTCGGCAACAGAAACATCACTGTGTTTGTCCC  495

seq1  ACAGTGGAGAACAAGTCTGGATCCTAATGCCACAGAACAGCACTTCTTAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGAGAACAAGTCTGGATCCTAATGCCACAGAACAGCACTTCTTAA  545

seq1  GCCAGCTCCAGGACCTTGGGATATTAGCTTTAACTCCTGCCCGGAAGGTC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTCCAGGACCTTGGGATATTAGCTTTAACTCCTGCCCGGAAGGTC  595

seq1  TTAGGGCAAAGAATTGCTTCTCATGAAGACAGGTTCTTGCTTCACTTAGC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGCAAAGAATTGCTTCTCATGAAGACAGGTTCTTGCTTCACTTAGC  645

seq1  AGACAAGACTGAGGGTATAATTGTAACAAATGATAACTTGAGAGAGTTTG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGACTGAGGGTATAATTGTAACAAATGATAACTTGAGAGAGTTTG  695

seq1  TGACAGAGTCGGTGTCCTGGAGAGAAATTAGTAAAACAAGACTGCTTCCG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAGTCGGTGTCCTGGAGAGAAATTAGTAAAACAAGACTGCTTCCG  745

seq1  TACACTTTCGTGGGGGACATATTTATGGTTCCTGATGACCCTCTGGGAAG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTTTCGTGGGGGACATATTTATGGTTCCTGATGACCCTCTGGGAAG  795

seq1  AAATGGACCTCGGCATGATGAATTTTTTCAAAAGGAGACCTTTCTTAGAG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGACCTCGGCATGATGAATTTTTTCAAAAGGAGACCTTTCTTAGAG  845

seq1  ACATGCATCCAAGAATCAACGCCCAACCAAGTGTGGACACATCTGGCCCT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCATCCAAGAATCAACGCCCAACCAAGTGTGGACACATCTGGCCCT  895

seq1  GGCTTCCGGAGCCACAACACCCAGGGAGTCAACACGAGCCACGAGGCTCC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCGGAGCCACAACACCCAGGGAGTCAACACGAGCCACGAGGCTCC  945

seq1  ACCCTGGACCCATAGAGCAGCTTCCAACCCTTGGCTTCCTCAGCAGCCTC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGACCCATAGAGCAGCTTCCAACCCTTGGCTTCCTCAGCAGCCTC  995

seq1  ATTCCACATCCATGGCCACCTTTCCAAGAATGCAGCAGAACCTTTCTGAG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCACATCCATGGCCACCTTTCCAAGAATGCAGCAGAACCTTTCTGAG  1045

seq1  CTGGCCCAGAGATATTCTGCAGAGACAAGCGAGCTGAGGGAGGTGTTGCT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCCAGAGATATTCTGCAGAGACAAGCGAGCTGAGGGAGGTGTTGCT  1095

seq1  GAACATCTTCCCTGACTCTGAGCAAAAAACGGAAGATAGACCAGATTCTG  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATCTTCCCTGACTCTGAGCAAAAAACGGAAGATAGACCAGATTCTG  1145

seq1  GCAGCTCATCCCTACCTAAAAGACCTGAATTC  1173
      ||||||||||||||||||||||||||||||||
seq2  GCAGCTCATCCCTACCTAAAAGACCTGAATTC  1177