BAC Information

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BAC

Clone NameB6Ng01-289B17
Chromosome5 (Build37)
Map Location 146,407,082 - 146,408,232
singlet/doubletsinglet
Overlap geneLOC667065
Upstream geneEG621967, Tmem130, LOC100039427, Trrap, Smurf1, AW146299, EG231885, EG666992, 1700018F24Rik, Arpc1a, Arpc1b, Pdap1, Bud31, Ptcd1, Cpsf4, Atp5j2, Zkscan14, Zkscan5, EG622116, Zfp655, LOC677270, EG666311, EG622127, LOC100039566, Cyp3a16, LOC100041375
Downstream geneCyp3a41, Cyp3a44, Cyp3a11, Cyp3a25, LOC667098, LOC667104, LOC100041449, LOC433961, EG622306, 1700001J03Rik, LOC667121, Rnf6, Cdk8, Wasf3, LOC623198, LOC622924, 4930449I24Rik, LOC100041548, LOC100041554, LOC100041566, LOC100041578, EG667172, Gpr12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289B17.bB6Ng01-289B17.g
ACCGA086596GA086597
length1,1851,162
definitionB6Ng01-289B17.b B6Ng01-289B17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcccaaagtgtggcaacactggagatagaacccctaggaaacaaat
ctggaaccattgatttgagcatcagcaacagaatacaagagatggaagag
agaatctcaggtgcagaagattccttagagaaaatcagcacaacaatcaa
agaaaatgcaaaatgcaagaagatcctaactcaaaagatgcaggaaatcc
acgacataatgagaagaccagacctacagataatagtagtagatgagaat
gaagatttactacttaaaagcccagcaaatatcttcaacaaaattataga
agaaaacttcccaaacctaaagaaggagatgcccatgacatacaagaagc
ctacagaactccaaatggactggaccagaaaagaaattcattccaacaca
taataatcagaataacaaatacactaaataaagatagaatattaaaagca
gtaaggggaaaagatcaagtaacatataaagacaggcctattagaattac
accagacttttcaccagagactatgaaagccagaagatcctggaaagatg
ttatacagacactaagagaacacaaatgccagcccaggctactaaagcca
gacaaactttcaattagcataaatggagaaaacaaagtattccatgacaa
aaccaaagtcacacattatctttccacgaatccagcccttcaaaggataa
taacagaaaaaaaaaaacaataaaaggatggaaaccatgtcctagaaaaa
gcaagaaagcaatccttcatcaaaccgaaaagaagacaaccacaagaaca
gaatgccaactctaacaacaaaaataataggaagcaacaattacttctcc
ttaatatctcttaatatcaatggactcaatttaaaataaaaagacatacg
ctaacagacgggctgtatagacaggaccaaaattttgctgcttacaggaa
acccatctcaggaaaaagaacagacacctccctcagagtaaaagctggaa
aaaattttccagcacatgatctgaagaaacaggtggagtagccattctaa
tatccaataaatcgacttccaaccaagtatcaaaaaagaatatgggaggg
acacctttcatactcatcaacgttaaatctcagatgtgatattaatgctt
cgaatgcaagggccagcccaccatttctattaaag
gaattctgtgcccagagtgagggagaggatctcaggtgggacctggggac
tcagtaatcaggacacaaagaagagagatgtgccagagcaagactacaat
ggcaggtaatatgccacagggttgggaattaggctggggagtaggccagg
caggctagaatagctcagaatctgtcagcttagtgcctgaacctctgata
tatatatatatatatatatatatgtaaatatacaaacaaagaaactaagg
ctgggcatagaaaaccataaaagaggaagctgtagaagagtttgggttgg
gtgcctagcagatctgcataaagtcattattaacattaacaagagttagt
accactggagatatagatcagaagtaaacagtttccctagcatatatagg
tgtggcttgatctcgtttatggccaaaacattaaaatgaaaaattaactt
tgtccttacttcatttgaggccttcaagatgactccacaagtaaaggcat
tgactgataatgttgataatctgagtttggtctttgggacccacataata
ggagagaactggctctcaaaattcctcttttgacctacacacacacacac
acacacacacacacacacacacacacacaagcacacacatacaaaaaaca
gatacatgcacacacatacactataccatttgctgccccctaaccacaat
aaattaaaacatgaaaatttgaaaactttttacaagcattaatttcaact
tttgctaactgttgggggagggtctttcattctctgtattcagatgctgg
tttctgtcccctgagaccctgatactcgtcagaagtgggcaatctcaatc
agtaataaagaatcccctgtatcattggggtttcaagaaatactccccag
ctatctcttattggttaacaaagggctgaaaatcaaattactgggcagaa
atagaaacaagttgttagtcaacaggcaggttagggtccaagaagaaggt
agggcttcacagcaggtagaaggaagaaagaagggtgtcaggagtcaggc
atcagaaaaaattcactcaagagagcctcacataaaaacaccatgggaat
tggggaaaggactggcaaagttcaattcttgcaagaatggcttgtggcag
gaatgttatagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_146407082_146408232
seq2: B6Ng01-289B17.g_69_1230

seq1  GAATTCTGTGCCCAGAGTGAGGGAGAGGATCTCAGGTGGGACCTGGGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGCCCAGAGTGAGGGAGAGGATCTCAGGTGGGACCTGGGGAC  50

seq1  TCAGTAATCAGGACACAAAGAAGAGAGATGTGCCAGAGCAAGACTACAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAATCAGGACACAAAGAAGAGAGATGTGCCAGAGCAAGACTACAAT  100

seq1  GGCAGGTAATATGCCACAGGGTTGGGAATTAGGCTGGGGAGTAGGCCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTAATATGCCACAGGGTTGGGAATTAGGCTGGGGAGTAGGCCAGG  150

seq1  CAGGCTAGAATAGCTCAGAATCTGTCAGCTTAGTGCCTGAACCTCTGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTAGAATAGCTCAGAATCTGTCAGCTTAGTGCCTGAACCTCTGATA  200

seq1  TATATATATATATATATATATATGTAAATATACAAACAAAGAAACTAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATGTAAATATACAAACAAAGAAACTAAGG  250

seq1  CTGGGCATAGAAAACCATAAAAGAGGAAGCTGTAGAAGAGTTTGGGTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCATAGAAAACCATAAAAGAGGAAGCTGTAGAAGAGTTTGGGTTGG  300

seq1  GTGCCTAGCAGATCTGCATAAAGTCATTATTAACATTAACAAGAGTTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTAGCAGATCTGCATAAAGTCATTATTAACATTAACAAGAGTTAGT  350

seq1  ACCACTGGAGATATAGATCAGAAGTAAACAGTTTCCCTAGCATATATAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGGAGATATAGATCAGAAGTAAACAGTTTCCCTAGCATATATAGG  400

seq1  TGTGGCTTGATCTCGTTTATGGCCAAAACATTAAAATGAAAAATTAACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTTGATCTCGTTTATGGCCAAAACATTAAAATGAAAAATTAACTT  450

seq1  TGTCCTTACTTCATTTGAGGCCTTCAAGATGACTCCACAAGTAAAGGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTACTTCATTTGAGGCCTTCAAGATGACTCCACAAGTAAAGGCAT  500

seq1  TGACTGATAATGTTGATAATCTGAGTTTGGTCTTTGGGACCCACATAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGATAATGTTGATAATCTGAGTTTGGTCTTTGGGACCCACATAATA  550

seq1  GGAGAGAACTGGCTCTCAAAATTCCTCTTTTGACCTACACACACACACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAACTGGCTCTCAAAATTCCTCTTTTGACCTACACACACACACAC  600

seq1  ACACACACACACACACACACACACACACAAGCACACACATAC-AAAAACA  649
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACACACACACACACACACACACACACACAAGCACACACATACAAAAAACA  650

seq1  GATACATGCACACACATACACTATACCATTTGCTG-CCCCTAACCACAAT  698
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GATACATGCACACACATACACTATACCATTTGCTGCCCCCTAACCACAAT  700

seq1  AAATTAAAACATGAAAATTTGAAAACTTTTTACAAGCATTAATTTCAACT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAACATGAAAATTTGAAAACTTTTTACAAGCATTAATTTCAACT  750

seq1  TTTGCTAACTGTTGGGGGAGGGTCTTTCATTCTCTGTATTCAGATGCTGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTAACTGTTGGGGGAGGGTCTTTCATTCTCTGTATTCAGATGCTGG  800

seq1  TTTCTGTCCCCTGAGACCCTGATACTCGTCAGAAGTGGGCAATCTC-ATC  847
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTCTGTCCCCTGAGACCCTGATACTCGTCAGAAGTGGGCAATCTCAATC  850

seq1  AGTAATAAAGAATCCCCTGTATCATTGGGGTTTCAAG-AATACTCCCCAG  896
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGTAATAAAGAATCCCCTGTATCATTGGGGTTTCAAGAAATACTCCCCAG  900

seq1  CTATCTCTTATTGGTTAACAAAGGGCTGAAAATCAAATTACTGGGCAG-A  945
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTATCTCTTATTGGTTAACAAAGGGCTGAAAATCAAATTACTGGGCAGAA  950

seq1  ATAG-AACAAGTTGTTAGTC-ACAGGCAGGTTAGGGTCCAAG-AGAA-GT  991
      |||| ||||||||||||||| ||||||||||||||||||||| |||| ||
seq2  ATAGAAACAAGTTGTTAGTCAACAGGCAGGTTAGGGTCCAAGAAGAAGGT  1000

seq1  AGGGC-TCACAGGCAGGTAG-AGGAAG-AAGAAGGTTGTCAGGAGGTCAG  1038
      ||||| ||||| |||||||| |||||| ||||||| |||||||| |||||
seq2  AGGGCTTCACA-GCAGGTAGAAGGAAGAAAGAAGGGTGTCAGGA-GTCAG  1048

seq1  GCATCAGAAAAAA-TCAC-CAAGAGAG-CTCACCATAAAAACACACATGG  1085
      ||||||||||||| |||| |||||||| |||| ||||||||||| |||||
seq2  GCATCAGAAAAAATTCACTCAAGAGAGCCTCA-CATAAAAACAC-CATGG  1096

seq1  --AATGGAGAAA-GACTGGGAAAGGTCAAT--CTGCAAGGAAAATGGGGC  1130
        | ||| |||| |||||| |||| |||||   ||||||   |||  |||
seq2  GAATTGGGGAAAGGACTGGCAAAGTTCAATTCTTGCAAG---AAT--GGC  1141

seq1  TTGTGGCAGGGATGTTATAGC  1151
      |||||||||| ||||||||||
seq2  TTGTGGCAGGAATGTTATAGC  1162