BAC Information

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BAC

Clone NameB6Ng01-290B06
Chromosome5 (Build37)
Map Location 5,814,156 - 5,995,350
singlet/doubletdoublet
Overlap genenone
Upstream genePftk1, 1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1, LOC727711, LOC546854
Downstream geneLOC100041208, EG435830
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290B06.bB6Ng01-290B06.g
ACCGA087308GA087309
length1,117435
definitionB6Ng01-290B06.b B6Ng01-290B06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,814,156 - 5,815,275)(5,994,916 - 5,995,350)
sequence
gaattctatagacagccaaaagtggtgttatcataaatgtcggagataca
actttctcaaatgcatgtgagtaaaagtagccatggaggacagaggtgat
gtatacatggagctgaaattagagctgctgtgagtcaccctgtgtgccgg
ggttaaacttatcagcaaaggccaggaaatcgaggtggggggcagggagt
tccagtagagggattggaactacaggagatagtcagaggtgggagattta
ctctggacaaactccaaggaagattgacacaggaaatcaaggagaggtaa
tttgcctcttggcagacatagtatagttttagtgggttaaatatgttaca
agctagacaggaaacaagcctaagttgtggcctaggccttttacattaat
aataagcctccaagtaattattcgggaactggggtgtaggtgggaaagcc
catggttattttgtacttttaagactgtccccttacctcaacaaattact
agcatccatgctcaggggtttggtggcgatgtagctactgtcttagagaa
aaatccaatcctgtcttccctcctaagtggagtccttcaaagttggacta
catgctgacagcagaagacagtgtcctgaggctgggcaagggtgctagaa
aagggcgtgtgaatggagcaatggattactctggcagaatcagcctggag
gcttgtgccagcacagtgccagagcagaccagcatgggtcctgtagattt
ctccttacagggcccttcttttttgtgtgtttccagtgctcttataggca
ctgtggtccctggacgatgataccagagagtggagagcagtgtgctgaag
atacagaccagagcagaagagcacagagccaggtaggaattccaggtgac
ttttgccattgggaggctctgtttaaatcacaggttgaaagtagaggaaa
agttgctgatgctttattctgcccctggaatataaaactcactgaatggg
cactggggggtcgggacctctagtttgggtctggatgacccctgtgcact
ggacattaatttcctcttgcctttttgcatcatcagcttccacgtgatca
cttcagggtctctggta

gaattcaaaactgctgcaacaaaacctgaaaaggtctttgaattaagggg
agagcaagagtcttagaccatgcaattgcctattcatctcaccccatgga
actttcttcatgtctctatggctggagacaactgtacacttaaagagagt
attcaccacttaggtgttaatcctcccactgtccagtttggggaactgtc
tatcaaaggaataaccctagttcccacagaaggacaccccaggctgtgaa
tctgacaagaagctttaaaaaaaaaaatgtgtctgaaagaagcagaaaga
cctcatgtaattatgaagaatttttgttctttttttttttctttttcttt
ctttcttttcctttccgtcctttctctctctctctctctctctctctctc
tctctctctctctctctctctctctctctctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_5814156_5815275
seq2: B6Ng01-290B06.b_50_1166

seq1  GAATTCTATAGACAGCCAAAAGTGGTGTTATCATAAATGTCGGAGATACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAGACAGCCAAAAGTGGTGTTATCATAAATGTCGGAGATACA  50

seq1  ACTTTCTCAAATGCATGTGAGTAAAAGTAGCCATGGAGGACAGAGGTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTCAAATGCATGTGAGTAAAAGTAGCCATGGAGGACAGAGGTGAT  100

seq1  GTATACATGGAGCTGAAATTAGAGCTGCTGTGAGTCACCCTGTGTGCCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACATGGAGCTGAAATTAGAGCTGCTGTGAGTCACCCTGTGTGCCGG  150

seq1  GGTTAAACTTATCAGCAAAGGCCAGGAAATCGAGGTGGGGGGCAGGGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAACTTATCAGCAAAGGCCAGGAAATCGAGGTGGGGGGCAGGGAGT  200

seq1  TCCAGTAGAGGGATTGGAACTACAGGAGATAGTCAGAGGTGGGAGATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTAGAGGGATTGGAACTACAGGAGATAGTCAGAGGTGGGAGATTTA  250

seq1  CTCTGGACAAACTCCAAGGAAGATTGACACAGGAAATCAAGGAGAGGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGACAAACTCCAAGGAAGATTGACACAGGAAATCAAGGAGAGGTAA  300

seq1  TTTGCCTCTTGGCAGACATAGTATAGTTTTAGTGGGTTAAATATGTTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTCTTGGCAGACATAGTATAGTTTTAGTGGGTTAAATATGTTACA  350

seq1  AGCTAGACAGGAAACAAGCCTAAGTTGTGGCCTAGGCCTTTTACATTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGACAGGAAACAAGCCTAAGTTGTGGCCTAGGCCTTTTACATTAAT  400

seq1  AATAAGCCTCCAAGTAATTATTCGGGAACTGGGGTGTAGGTGGGAAAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCCTCCAAGTAATTATTCGGGAACTGGGGTGTAGGTGGGAAAGCC  450

seq1  CATGGTTATTTTGTACTTTTAAGACTGTCCCCTTACCTCAACAAATTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTATTTTGTACTTTTAAGACTGTCCCCTTACCTCAACAAATTACT  500

seq1  AGCATCCATGCTCAGGGGTTTGGTGGCGATGTAGCTACTGTCTTAGAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCATGCTCAGGGGTTTGGTGGCGATGTAGCTACTGTCTTAGAGAA  550

seq1  AAATCCAATCCTGTCTTCCCTCCTAAGTGGAGTCCTTCAAAGTTGGACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCAATCCTGTCTTCCCTCCTAAGTGGAGTCCTTCAAAGTTGGACTA  600

seq1  CATGCTGACAGCAGAAGACAGTGTCCTGAGGCTGGGCAAGGGTGCTAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGACAGCAGAAGACAGTGTCCTGAGGCTGGGCAAGGGTGCTAGAA  650

seq1  AAGGGCGTGTGAATGGAGCAATGGATTACTCTGGCAGAATCAGCCTGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCGTGTGAATGGAGCAATGGATTACTCTGGCAGAATCAGCCTGGAG  700

seq1  GCTTGTGCCAGCACAGTGCCAGAGCAGACCAGCATGGGTCCTGTAGATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGCCAGCACAGTGCCAGAGCAGACCAGCATGGGTCCTGTAGATTT  750

seq1  CTCCTTACAGGGCCCTTCTTTTTTGTGTGTTTCCAGTGCTCTTATAGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTACAGGGCCCTTCTTTTTTGTGTGTTTCCAGTGCTCTTATAGGCA  800

seq1  CTGTGGTCCCTGGACGATGATACCAGAGAGTGGAGAGCAGTGTGCTGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTCCCTGGACGATGATACCAGAGAGTGGAGAGCAGTGTGCTGAAG  850

seq1  ATACAGACCAGAGCAGAAGAGCACAGAGCCAGGTAGGAATTCCAGGTGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGACCAGAGCAGAAGAGCACAGAGCCAGGTAGGAATTCCAGGTGAC  900

seq1  -TTTGCCATTGGGAGGCTCTGTTTAAATCACAGGTTGAAAGTAGAGGAAA  949
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCATTGGGAGGCTCTGTTTAAATCACAGGTTGAAAGTAGAGGAAA  950

seq1  AGTTGCTGATGCTTTATTCTGCCCCTGGAATATAAAAACTCACTGAATGG  999
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGTTGCTGATGCTTTATTCTGCCCCTGGAATAT-AAAACTCACTGAATGG  999

seq1  GCACT-GGGGGTCGGGACCTCTAGTTTGGGTCTGGGATGACCCCTGTGCA  1048
      ||||| ||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCACTGGGGGGTCGGGACCTCTAGTTTGGGTCT-GGATGACCCCTGTGCA  1048

seq1  CTGGAACAATAAATTCCTCTTG-CTTTTTGCATCCATCCAGGCTCCACGT  1097
      |||| ||| ||| ||||||||| |||||||||| ||| |||  |||||||
seq2  CTGG-ACATTAATTTCCTCTTGCCTTTTTGCAT-CAT-CAGCTTCCACGT  1095

seq1  GGTTCACTCAGGGGTCTCTGGTA  1120
       | |||||   ||||||||||||
seq2  -GATCACTTCAGGGTCTCTGGTA  1117


seq1: chr5_5994916_5995350
seq2: B6Ng01-290B06.g_68_502 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  50

seq1  AGAGAGAGAGAGAAAGGACGGAAAGGAAAAGAAAGAAAGAAAAAGAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAAAGGACGGAAAGGAAAAGAAAGAAAGAAAAAGAAAAA  100

seq1  AAAAAAGAACAAAAATTCTTCATAATTACATGAGGTCTTTCTGCTTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAACAAAAATTCTTCATAATTACATGAGGTCTTTCTGCTTCTTT  150

seq1  CAGACACATTTTTTTTTTTAAAGCTTCTTGTCAGATTCACAGCCTGGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACATTTTTTTTTTTAAAGCTTCTTGTCAGATTCACAGCCTGGGGT  200

seq1  GTCCTTCTGTGGGAACTAGGGTTATTCCTTTGATAGACAGTTCCCCAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTCTGTGGGAACTAGGGTTATTCCTTTGATAGACAGTTCCCCAAAC  250

seq1  TGGACAGTGGGAGGATTAACACCTAAGTGGTGAATACTCTCTTTAAGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGTGGGAGGATTAACACCTAAGTGGTGAATACTCTCTTTAAGTGT  300

seq1  ACAGTTGTCTCCAGCCATAGAGACATGAAGAAAGTTCCATGGGGTGAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGTCTCCAGCCATAGAGACATGAAGAAAGTTCCATGGGGTGAGAT  350

seq1  GAATAGGCAATTGCATGGTCTAAGACTCTTGCTCTCCCCTTAATTCAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGGCAATTGCATGGTCTAAGACTCTTGCTCTCCCCTTAATTCAAAG  400

seq1  ACCTTTTCAGGTTTTGTTGCAGCAGTTTTGAATTC  435
      |||||||||||||||||||||||||||||||||||
seq2  ACCTTTTCAGGTTTTGTTGCAGCAGTTTTGAATTC  435


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