BAC Information

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BAC

Clone NameB6Ng01-290G19
Chromosome5 (Build37)
Map Location 59,709,039 - 59,710,204
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041385, LOC100041396, LOC666499, EG625870
Downstream geneLOC100041425, LOC546866, Cbfa2t2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290G19.bB6Ng01-290G19.g
ACCGA087570GA087571
length1,1921,145
definitionB6Ng01-290G19.b B6Ng01-290G19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcatctgcttcagagctactaagagctggctccccgagcccat
ccagcgatgagcacaggctccttttcctagagacctccgctaattgatct
ttcttcttttccctttttcctctttttcttctaatctctctccaggtatt
cctacctaaccttaacttttcctcgggttcaagacccttggaaaggcctg
tatacttattttgtgtaccatattttctctttgctcctactctctctccc
cgctttacttctgatagcttgtcctgaatttcctctagaattttcagccc
tatcttaatcacttgataacatgtgaaaaggaacaaaagggctcctaaca
ccagaaaaaattcaaggccaaacatattccactttacttctgatagactg
tcttgaatttccttagaaagttcaagatcagacttacctcgtaaagctgt
actcactggtactctcgttccccagctgaaaagttctgaattcatacagt
tgaatccttcttaacagtctgctttacgggaacctttattaccgcgaccc
gcagttctggttctggaatgagggatcttcctcgcgccagtcccgagttt
tttctcgtcccggaattcggcaccaattgttattagacgcgttctcacgc
ccggccaggaagaacaccacagaccagaatcttctgcggcaaagctttat
tgcttacatcttcaggagcaggagtgcaagaagcaaaaaagagagaaaaa
cgaaaccccgtccctattaaggagaattttccttcgcctaggacgtgtca
ctccctgattggctgcagcccatcggccgatttgacgtcacgaggaaggc
agagcacatggagtgaagaaccaccctcggcacatgcgcagattatttgt
ttaccacttagaacacagctgtcagcgccatcttgtaacggcgaatgtgg
gcgcggctcccaacacaacattttatattaataatacagacacataaata
gagagcaaagattactatggtttttctttatagcatctggtcgataatca
ttttatgttatttaaaaaatgacaattccacttacttttttttttatttg
tacctggttagagcatgtaaacaagccctggcctatagagtgattccagg
caagcagggtcttttaacagcgaaaaccctgtgttctcgtca

gaattcaaaatattcaaggaagcattaatgttttctagaagcagaaatat
gcatttctcgctgtggagagactttcaagaatgaatctgttattaaacaa
aaatactcataataatgttatgattcttttcagtataattaataatatac
tgaaaaataagagcagtttgattattttttctttctgttaataggattat
tagctgttcagcaaaaattttgagtttgatttgggaagtcaagaggcata
attaaatgcagtatctcatatcatatgataaaggactcactcaggcaaca
gcatattactcagtattaggtgggttttcacaggataatatacagttgtt
catattttgataactctaaaagaatgtttcattagcctgtttttttttaa
ttcacccaacatacaatgcaaaacaaaaatcagcttattgagaggaactt
aatatcatttttgttttagttcttgtgatcagatgactaacatgctcttt
accttttaaattatccaataatttttccatatttttaccttacttcaaat
atatcttgccttaaatttggaagggaaaaatacatgcacatataacttta
cccatttttggttcatttaaattaaaacatgcattatatggaaaccttat
ggggtagactcttgactgaaaattaacaatgattttcatataaacttggg
agagtggagaagatgcaaacagtgtttttctacattttattatgaaggcg
ctgactgaaatgatagtaccagggtcatagctcaatctaataaatatcat
tgctatttatgaaacttccacacacatatttattaattacttaaaacact
aaatggtctttcttgtccttgccttttatcatatttttcacagctcctat
tttgatagttattattcattaatgacaatgcttttggtttcctatagttg
tcacccatattcacttacagttaagctttttatttagtatttttcagact
acttcatacatacttttggccagtaaagtagagtagactaaatacatgat
tctctacatataacacattattttgaatgtagtaaaaactatggctaact
gcaagaggttaaaccaatgagttcccacctctaggttgaattgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_59709039_59710204
seq2: B6Ng01-290G19.g_64_1208

seq1  GAATTCAAAATATTCAAGGAAGCATTAATGTTTTCTAGAAGCAGAAATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATATTCAAGGAAGCATTAATGTTTTCTAGAAGCAGAAATAT  50

seq1  GCATTTCTCGCTGTGGAGAGACTTTCAAGAATGAATCTGTTATTAAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCTCGCTGTGGAGAGACTTTCAAGAATGAATCTGTTATTAAACAA  100

seq1  AAATACTCATAATAATGTTATGATTCTTTTCAGTATAATTAATAATATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTCATAATAATGTTATGATTCTTTTCAGTATAATTAATAATATAC  150

seq1  TGAAAAATAAGAGCAGTTTGATTATTTTTTCTTTCTGTTAATAGGATTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAATAAGAGCAGTTTGATTATTTTTTCTTTCTGTTAATAGGATTAT  200

seq1  TAGCTGTTCAGCAAAAATTTTGAGTTTGATTTGGGAAGTCAAGAGGCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTTCAGCAAAAATTTTGAGTTTGATTTGGGAAGTCAAGAGGCATA  250

seq1  ATTAAATGCAGTATCTCATATCATATGATAAAGGACTCACTCAGGCAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATGCAGTATCTCATATCATATGATAAAGGACTCACTCAGGCAACA  300

seq1  GCATATTACTCAGTATTAGGTGGGTTTTCACAGGATAATATACAGTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATTACTCAGTATTAGGTGGGTTTTCACAGGATAATATACAGTTGTT  350

seq1  CATATTTTGATAACTCTAAAAGAATGTTTCATTAGCCTGTTTTTTTTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTGATAACTCTAAAAGAATGTTTCATTAGCCTGTTTTTTTTTAA  400

seq1  TTCACCCAACATACAATGCAAAACAAAAATCAGCTTATTGAGAGGAACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCCAACATACAATGCAAAACAAAAATCAGCTTATTGAGAGGAACTT  450

seq1  AATATCATTTTTGTTTTAGTTCTTGTGATCAGATGACTAACATGCTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCATTTTTGTTTTAGTTCTTGTGATCAGATGACTAACATGCTCTTT  500

seq1  ACCTTTTAAATTATCCAATAATTTTTCCATATTTTTACCTTACTTCAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTAAATTATCCAATAATTTTTCCATATTTTTACCTTACTTCAAAT  550

seq1  ATATCTTGCCTTAAATTTGGAAGGGAAAAATACATGCACATATAACTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTGCCTTAAATTTGGAAGGGAAAAATACATGCACATATAACTTTA  600

seq1  CCCATTTTTGGTTCATTTAAATTAAAACATGCATTATATGGAAACCTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTTTGGTTCATTTAAATTAAAACATGCATTATATGGAAACCTTAT  650

seq1  GGGGTAGACTCTTGACTGAAAATTAACAATGATTTTCATATAAACTTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTAGACTCTTGACTGAAAATTAACAATGATTTTCATATAAACTTGGG  700

seq1  AGAGTGGAGAAGATGCAAACAGTGTTTTTCTACATTTTATTATGAAGGCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGGAGAAGATGCAAACAGTGTTTTTCTACATTTTATTATGAAGGCG  750

seq1  CTGACTGAAATGATAGTACCAGGGTCATAGCTCAATCTAATAAATATCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGAAATGATAGTACCAGGGTCATAGCTCAATCTAATAAATATCAT  800

seq1  TGCTATTTATGAAACTTCCACACACATATTTATTAATTACTTAAAACACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTTATGAAACTTCCACACACATATTTATTAATTACTTAAAACACT  850

seq1  AAATGGTCTTTCTTGTCCTTGCCTTTTATCATATTTTTCACAGCTCCTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTCTTTCTTGTCCTTGCCTTTTATCATATTTTTCACAGCTCCTAT  900

seq1  TTTGATAGTTATTATTCATTAATGACAAATGCTTTTGGTTTCCTATAGTT  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTGATAGTTATTATTCATTAATGAC-AATGCTTTTGGTTTCCTATAGTT  949

seq1  GTCACCCAATAATTCACTTACAGTTTAAAGCTTTTTATTTAGTA-TTTTC  999
      ||||||||   ||||||||||||||  ||||||||||||||||| |||||
seq2  GTCACCCA--TATTCACTTACAGTT--AAGCTTTTTATTTAGTATTTTTC  995

seq1  AGACTACTTCATACAATAACTTTTGCCAAGTAAAAGGTAGAGTAAGACTA  1049
      |||||||||||||||   ||||||| | ||||||  ||||||| ||||||
seq2  AGACTACTTCATACA--TACTTTTGGCCAGTAAA--GTAGAGT-AGACTA  1040

seq1  AATACATTGATTTCTCTAACAATAATTACACATTATTTTTAAATGTAGTA  1099
      |||||| ||| |||||||   |||   |||||||| |||| |||||||| 
seq2  AATACA-TGA-TTCTCTACATATA---ACACATTA-TTTTGAATGTAGT-  1083

seq1  AAAAACTATGTCTTATCTTGTAAAAGAGTGTTAAAACACAATGAGTTTTC  1149
      |||||||||| || |     |  ||||| ||||||   |||||||||  |
seq2  AAAAACTATGGCTAA----CTGCAAGAG-GTTAAA--CCAATGAGTTCCC  1126

seq1  A-CTCTAGGTTG-ATTGAC  1166
      | |||||||||| ||||||
seq2  ACCTCTAGGTTGAATTGAC  1145


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