BAC Information

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BAC

Clone NameB6Ng01-292L08
Chromosome5 (Build37)
Map Location 135,502,550 - 135,643,972
singlet/doubletdoublet
Overlap geneStx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2
Upstream geneGats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln, Wbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11
Downstream geneBcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121, Hip1, Ccl26l, Ccl24, Rhbdd2, Por, 2010310D06Rik, Styxl1, Mdh2, 2900083I11Rik, Hspb1, Ywhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292L08.bB6Ng01-292L08.g
ACCGA089276GA089277
length5091,016
definitionB6Ng01-292L08.b B6Ng01-292L08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,643,458 - 135,643,972)(135,502,550 - 135,503,562)
sequence
acaaccacctgattctgcctctccggtgctctgtgccatggcatttgacc
ggaaaattttatttcattttgcttttccgagacagggtttccttctctgt
gtagccctggctgtcctgcaactcactctatagaccaggctggccttgaa
ctcagagatctaccagcctctgcctcccaagtgctggggtcaaaggggtt
ggaattttctttttttcttttctttttctttctttctttctttttttttt
ttttctttacatgtatatggcacagaggacaatttgtagaagttggtttt
cactagtgagttttaggctgttatcaagtcctttaatcccccatgacccc
tgacccttcaaggaattatttatgcgctgcatgttcacctaaaaggagat
ctgtgtcatcattgtctaaatagctgtgttccggagtcattatcacacct
tccttcattttgacttcaggtcttcgaattctcagctacccacctggaaa
tttcttctg
gaattcattatgtagctgagggtagcctcaaactacatgcagttcttctg
cttctgagtcccagtgctgggatttcgggcatgcacggttgcaagctcag
tttacctagagattggggtggaagtcaggtccttgctgatcatacgactc
taccaacttgaacaacagccccagccccaggccttcattttcttctggag
aattctgttcccatgaaaacacagagtgttcccagatcactggtcacttc
tgggtggggctagcatgacccagggatctactacaggcagtagaggatag
gtattgcaggggcagtcagagcaagccagcctgaaagtaagagatacatg
tgtggccctctgaaggcagagaccgggtgtgatcccagaggaggggcccg
tgatgggaatttagaccttcccccaaatgaacgatttcagcatcagacct
gcagtgtctcctgatacgtatctgccatgctagctactcaggatgctgga
ttgggaacatctcaaattcaaggtcagtctgaactacattgggagttcaa
gatcagcctcagcaacttaatgagagcctgtctcgaataaaaatgtaaag
gagaagctaagagaacctgctttaggcgggtggtggtgacgcacgccttt
aatcccagaactcgggaggcagagacaggtggctatgagcttgaggccag
cctggtctacagagtgagttccaggatagccagatctacacagagaaacc
ctgtctcttttatctcctgggtaccaggcacacacgtggtacatatatgt
gagcaaaatatacacttaaattttaaaaaaactctttaaaaaaagttaaa
aatataagacctggggatgtagctcaagcctagaatcccccaggggaggg
gctgggggccttggctcagtggtagaagcccctgccctagaatcccccat
tgagggctgggggcgtggctcagtggtagagcacctgccctagatctccc
caggtagggctggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_135643458_135643972
seq2: B6Ng01-292L08.b_48_562 (reverse)

seq1  CAGAAGAAATTTCCAGGTGGGTAGCTGAGAATTCGAAGACCAGAAGTCAA  50
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CAGAAGAAATTTCCAGGTGGGTAGCTGAGAATTCGAAGACCTGAAGTCAA  50

seq1  AATGAAGGAAGGTGTGATAATGACTCCGGAACACAGCTATTTAGACAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGGAAGGTGTGATAATGACTCCGGAACACAGCTATTTAGACAATG  100

seq1  ATGACACAGATCTCCTTTTAGGTGAACATGCAGCGCATAAATAATTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACACAGATCTCCTTTTAGGTGAACATGCAGCGCATAAATAATTCCTT  150

seq1  GAAGGGTCAGGGGTCATGGGGGATTAAAGGACTTGATAACAGCCTAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGTCAGGGGTCATGGGGGATTAAAGGACTTGATAACAGCCTAAAAC  200

seq1  TCACTAGTGAAAACCAACTTCTACAAATTGTCCTCTGTGCCATATACATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAGTGAAAACCAACTTCTACAAATTGTCCTCTGTGCCATATACATG  250

seq1  TAAAGAAAAAAAAAAAAAAGAAAGAAAGAAAGAAAAAGAAAAGAAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAAAAAAAAAAAAAGAAAGAAAGAAAGAAAAAGAAAAGAAAAAAA  300

seq1  GAAAATTCCAACCCCTTTGACCCCAGCACTTGGGAGGCAGAGGCTGGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTCCAACCCCTTTGACCCCAGCACTTGGGAGGCAGAGGCTGGTAG  350

seq1  ATCTCTGAGTTCAAGGCCAGCCTGGTCTATAGAGTGAGTTGCAGGACAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGAGTTCAAGGCCAGCCTGGTCTATAGAGTGAGTTGCAGGACAGC  400

seq1  CAGGGCTACACAGAGAAGGAAACCCTGTCTCGGAAAAGCAAAATGAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTACACAGAGAAGGAAACCCTGTCTCGGAAAAGCAAAATGAAATA  450

seq1  AAATTTTCCGGTCAAATGCCATGGCACAGAGCACCGGAGAGGCAGAATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTCCGGTCAAATGCCATGGCACAGAGCACCGGAGAGGCAGAATCA  500

seq1  GGTGGTTGTGAATTC  515
      |||||||||||||||
seq2  GGTGGTTGTGAATTC  515

seq1: chr5_135502550_135503562
seq2: B6Ng01-292L08.g_66_1081

seq1  GAATTCATTATGTAGCTGAGGGTAGCCTCAAACTACATGCAGTTCTTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATGTAGCTGAGGGTAGCCTCAAACTACATGCAGTTCTTCTG  50

seq1  CTTCTGAGTCCCAGTGCTGGGATTTCGGGCATGCACGGTTGCAAGCTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAGTCCCAGTGCTGGGATTTCGGGCATGCACGGTTGCAAGCTCAG  100

seq1  TTTACCTAGAGATTGGGGTGGAAGTCAGGTCCTTGCTGATCATACGACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTAGAGATTGGGGTGGAAGTCAGGTCCTTGCTGATCATACGACTC  150

seq1  TACCAACTTGAACAACAGCCCCAGCCCCAGGCCTTCATTTTCTTCTGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAACTTGAACAACAGCCCCAGCCCCAGGCCTTCATTTTCTTCTGGAG  200

seq1  AATTCTGTTCCCATGAAAACACAGAGTGTTCCCAGATCACTGGTCACTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGTTCCCATGAAAACACAGAGTGTTCCCAGATCACTGGTCACTTC  250

seq1  TGGGTGGGGCTAGCATGACCCAGGGATCTACTACAGGCAGTAGAGGATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGGGCTAGCATGACCCAGGGATCTACTACAGGCAGTAGAGGATAG  300

seq1  GTATTGCAGGGGCAGTCAGAGCAAGCCAGCCTGAAAGTAAGAGATACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGCAGGGGCAGTCAGAGCAAGCCAGCCTGAAAGTAAGAGATACATG  350

seq1  TGTGGCCCTCTGAAGGCAGAGACCGGGTGTGATCCCAGAGGAGGGGCCCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCCTCTGAAGGCAGAGACCGGGTGTGATCCCAGAGGAGGGGCCCG  400

seq1  TGATGGGAATTTAGACCTTCCCCCAAATGAACGATTTCAGCATCAGACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGGAATTTAGACCTTCCCCCAAATGAACGATTTCAGCATCAGACCT  450

seq1  GCAGTGTCTCCTGATACGTATCTGCCATGCTAGCTACTCAGGATGCTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTCTCCTGATACGTATCTGCCATGCTAGCTACTCAGGATGCTGGA  500

seq1  TTGGGAACATCTCAAATTCAAGGTCAGTCTGAACTACATTGGGAGTTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAACATCTCAAATTCAAGGTCAGTCTGAACTACATTGGGAGTTCAA  550

seq1  GATCAGCCTCAGCAACTTAATGAGAGCCTGTCTCGAATAAAAATGTAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGCCTCAGCAACTTAATGAGAGCCTGTCTCGAATAAAAATGTAAAG  600

seq1  GAGAAGCTAAGAGAACCTGCTTTAGGCGGGTGGTGGTGACGCACGCCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCTAAGAGAACCTGCTTTAGGCGGGTGGTGGTGACGCACGCCTTT  650

seq1  AATCCCAGAACTCGGGAGGCAGAGACAGGTGGCTATGAGCTTGAGGCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGAACTCGGGAGGCAGAGACAGGTGGCTATGAGCTTGAGGCCAG  700

seq1  CCTGGTCTACAGAGTGAGTTCCAGGATAGCCAGATCTACACAGAGAAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCTACAGAGTGAGTTCCAGGATAGCCAGATCTACACAGAGAAACC  750

seq1  CTGTCTCTTTTATCTCCTGGGTACCAGGCACACACGTGGTACATATATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTTTTATCTCCTGGGTACCAGGCACACACGTGGTACATATATGT  800

seq1  GAGCAAAATATACACTTAAATTTTAAAAAAACTCTTTAAAAAAAGTTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAAATATACACTTAAATTTTAAAAAAACTCTTTAAAAAAAGTTAAA  850

seq1  AATATAAGACCTGGGGATGTAGCTCAAGCCTAGAATCCCCCA-GGGAGGG  899
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AATATAAGACCTGGGGATGTAGCTCAAGCCTAGAATCCCCCAGGGGAGGG  900

seq1  GCTGGGGG-CTTGGCTCAGTGGTAG-AGCCCCTG-CCTAGAATCCCCCAT  946
      |||||||| |||||||||||||||| |||||||| |||||||||||||||
seq2  GCTGGGGGCCTTGGCTCAGTGGTAGAAGCCCCTGCCCTAGAATCCCCCAT  950

seq1  TGAGGGGCTGGGGGCGTGGCTCAGTGGTAGAGCACCTG-CCTAGAATCCC  995
      ||| |||||||||||||||||||||||||||||||||| ||||||   ||
seq2  TGA-GGGCTGGGGGCGTGGCTCAGTGGTAGAGCACCTGCCCTAGATCTCC  999

seq1  CCAGGTAGGGGCTGGGGG  1013
      ||||||| ||||||||||
seq2  CCAGGTA-GGGCTGGGGG  1016