BAC Information

Click to search

BAC

Clone NameB6Ng01-294K12
Chromosome5 (Build37)
Map Location 85,748,089 - 85,749,012
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha5
Downstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294K12.bB6Ng01-294K12.g
ACCGA090728GA090729
length923719
definitionB6Ng01-294K12.b B6Ng01-294K12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ttaggcaagtattctattgagtatttcatatctactctcaaaaagtattt
ttttataagaaggaaaatttgactttatatttttcttgttcaggagttca
gataactagcagtcatatttttataggttctttcaaaataaaaccttatt
tcataatataaatattctctcactccaataacaacacccaaagcaacagc
aataacaatggaataaaagaaaactataattaggattctttccaggtttt
acactgagtatagtataataagtgcttcagaaaatggagatctgagatgt
atcatgctgacatagttattagttgtggtactctgagcaattatctgatt
ttcttaatcttggttttcttgaaagtaaaatgagaatcataaaactctat
acataatcaagggttagacagaatctttgtgtgcagatgggctgatgaaa
tcaattgcaatggggtcaagcagtacccttattatgttgcttgtattatt
ccacttataatttacttcatggagtttagtaaaattgtctcagatatttt
ctagagaaatattatgctaaataaaaagggagggctatttagagaaaggc
tctcccagctgcccatagatgaggattcaacatggactgacttgctgagt
gctaacggtaagtcataaacagaactagaaagactgtctgaatacctcct
aataaatcttttacttcctacaaatactgccatggagaattcagagctca
tgaaaactgagggcttggaatacacctatacctccacacttcacaataaa
gcaaattcatttcttccattccctctgttgactgaacagttggctcaaga
ttaatatattctgtcaaatcagcagtttgagcttttcctgcatggtatct
tcctctcctcctcctcctcctct

gaattccttgtttttctttctaggaaacaaacaaggaattgacatagtga
ttgatgtgcaaacaaagacacttaggaaagaagtcaaaatttcaagatga
aggtctagtgtatttgactaaataaggggagatttataaaaggcatgcag
gaagtattttcacagtttgaaattatcatttcacagtaaatattttatag
gtcttagttctccattaggaataaatttatagcaagaatagttctatctc
atgacccagctataacactcctggcatatacccaaaagatgttctaccat
cctacaaagacacttacttgctcaactatgttcatttcagctttatttaa
aatacccagaaatctgaaacaacttagatgtacctcagttgaataatgaa
taaagaaaatgttgtgcatctacacagtagaatacgatttagctatgaaa
aacaaagacatctatcgagaatatcatccagagtgatgtaacccagtccc
caaaggacacacatggtgtgtattaacttctaggtggatattagctagaa
aatacaagatgcccacgcaatactccactgacccaaaaagggtggacagg
caggtggacacaaggaaagatgcttaatactcacttggaatggggaatag
catggtagtagaaggcagaaggagggagggaacagagtaggagatgggtt
cgggagaggagttgggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_85748089_85749012
seq2: B6Ng01-294K12.b_56_977

seq1  TTAGGCAAGTATTCTATTGAGTATTTCATATCTACTCTCAAAAAGTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCAAGTATTCTATTGAGTATTTCATATCTACTCTCAAAAAGTATTT  50

seq1  TTTTATAAGAAGGAAAATTTGACTTTATATTTTTCTTGTTCAGGAGTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAAGAAGGAAAATTTGACTTTATATTTTTCTTGTTCAGGAGTTCA  100

seq1  GATAACTAGCAGTCATATTTTTATAGGTTCTTTCAAAATAAAACCTTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACTAGCAGTCATATTTTTATAGGTTCTTTCAAAATAAAACCTTATT  150

seq1  TCATAATATAAATATTCTCTCACTCCAATAACAACACCCAAAGCAACAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATATAAATATTCTCTCACTCCAATAACAACACCCAAAGCAACAGC  200

seq1  AATAACAATGGAATAAAAGAAAACTATAATTAGGATTCTTTCCAGGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAATGGAATAAAAGAAAACTATAATTAGGATTCTTTCCAGGTTTT  250

seq1  ACACTGAGTATAGTATAATAAGTGCTTCAGAAAATGGAGATCTGAGATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAGTATAGTATAATAAGTGCTTCAGAAAATGGAGATCTGAGATGT  300

seq1  ATCATGCTGACATAGTTATTAGTTGTGGTACTCTGAGCAATTATCTGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGCTGACATAGTTATTAGTTGTGGTACTCTGAGCAATTATCTGATT  350

seq1  TTCTTAATCTTGGTTTTCTTGAAAGTAAAATGAGAATCATAAAACTCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAATCTTGGTTTTCTTGAAAGTAAAATGAGAATCATAAAACTCTAT  400

seq1  ACATAATCAAGGGTTAGACAGAATCTTTGTGTGCAGATGGGCTGATGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATCAAGGGTTAGACAGAATCTTTGTGTGCAGATGGGCTGATGAAA  450

seq1  TCAATTGCAATGGGGTCAAGCAGTACCCTTATTATGTTGCTTGTATTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTGCAATGGGGTCAAGCAGTACCCTTATTATGTTGCTTGTATTATT  500

seq1  CCACTTATAATTTACTTCATGGAGTTTAGTAAAATTGTCTCAGATATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTATAATTTACTTCATGGAGTTTAGTAAAATTGTCTCAGATATTTT  550

seq1  CTAGAGAAATATTATGCTAAATAAAAAGGGAGGGCTATTTAGAGAAAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAAATATTATGCTAAATAAAAAGGGAGGGCTATTTAGAGAAAGGC  600

seq1  TCTCCCAGCTGCCCATAGATGAGGATTCAACATGGACTGACTTGCTGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCAGCTGCCCATAGATGAGGATTCAACATGGACTGACTTGCTGAGT  650

seq1  GCTAACGGTAAGTCATAAACAGAACTAGAAAGACTGTCTGAATACCTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACGGTAAGTCATAAACAGAACTAGAAAGACTGTCTGAATACCTCCT  700

seq1  AATAAATCTTTTACTTCCTACAAATACTGCCATGGAGAATTCAGAGCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATCTTTTACTTCCTACAAATACTGCCATGGAGAATTCAGAGCTCA  750

seq1  TGAAAACTGAGGGCTTGGAATACACCTATACCTCCACACTTCACAATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACTGAGGGCTTGGAATACACCTATACCTCCACACTTCACAATAAA  800

seq1  GCAAATTCATTTCTTCCATTCCCTCTGTTGACTGAACAGTTGGCTCAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATTCATTTCTTCCATTCCCTCTGTTGACTGAACAGTTGGCTCAAGA  850

seq1  TTAATATATTCTGTCAAATCAGGCAGTTTGAGCTTTTCCTGCATGGTATC  900
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTAATATATTCTGTCAAATCA-GCAGTTTGAGCTTTTCCTGCATGGTATC  899

seq1  TTCCTCCTCCTCCTCCTCCTCCTC  924
      ||||| ||||||||||||||||||
seq2  TTCCT-CTCCTCCTCCTCCTCCTC  922


| Home | SequenceCutter | Blast | Download |