BAC Information

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BAC

Clone NameB6Ng01-295F23
Chromosome5 (Build37)
Map Location 85,860,049 - 85,861,224
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295F23.bB6Ng01-295F23.g
ACCGA091252GA091253
length1,2131,184
definitionB6Ng01-295F23.b B6Ng01-295F23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccacattcttgagttctttatatatgttggatattagtctc
ctatcagatttacgataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattccc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagggccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcgtggtgattccaccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagacg
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatcttttccatct
tctgagatcttctttaatttctttcttcagagatttgaagtttttatcat
acagatctttcacttccttagttaggagtcacgcccaggatattttatat
tatttgggactattggagaagggtgttggtttcctaatttcattctcagc
cccgtttcttcttttgtatagagaagggcattgacttgtttgagtttatt
tatatccagctacttcaccgagcctgtttatcaggtttaaggagttcctg
ggtggaattttttacggtcactattataactatcctatatcacctggcaa
aggtgaagtttgggactctcctctctttgcaaatagtgctaccaccgtca
tggaatatctcta

gaattctcaaaagatgaaacatgaatgaaatgtttaacatcttttgcctt
cagggaaacataaattaaaactattttgatatttcatcttacctcagtca
gaatagcttcaatcaataaaacaaatgatagtgcaagcatgtcaggacgt
tagaaatagaagcatatattaactactattgggagtactagttttggcaa
ggccaatgtggtagttcatggggaagcagggaatatatctacctcaagat
gcagtgatgcccacttttgaacatatacccaaaggactctatctcattaa
agatatatttgttcatccatgttcattgatgctgtagtcataacaaccag
aaattggaaactgcctagatgtctgtaacctgatgagtgaataatattac
tatgacacatgtttgtagccctgttttactaaagactttggaattttaaa
tattttaagtatggaaagatctatagagaaacaataatacaaaattcagc
caatgtgactccatagaagaagttacatatttaaaaatgtcccttcaagg
aaactaggagattttcaagaagagcaagggttggagcatcagggttgcag
attaagtttgctgtgaactcttggctatcctacctattaatatatgaagt
ttcttgcttttatctagagcataggctgcactggagccttctttaattga
taggatgttatggaagtgacactgtgtaccatctgaaactggaccatgca
ttttatagtatttatagtttccaaaaatacttactctggatgatccaatc
cccatggagaaagtctgactgttcagatgatggtactataagaatcctta
gccaaaggcagcaatgaagagaatgcaacatcagaaaaaaatggcctctc
atatagagacaggacacaaggtgtgcttagataagagagagaggaaatat
tttcatgagtcccaaacacccagatgatgctgtaggaagagaatgaagtt
tcagattatactccttcacattcgtgactttcaaattatttttgtgacca
aagtgtatttctgaaggtaactatttgacccaattattattaatggcgac
agctagaactaaggaaaccaatacattgcttacctatctttgctatcacc
atgagtttaaagaaatggagaggcgtgaatttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_85860049_85861224
seq2: B6Ng01-295F23.g_67_1250

seq1  GAATTCTCAAAAGATGAAACATGAATGAAATGTTTAACATCTTTTGCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAAAGATGAAACATGAATGAAATGTTTAACATCTTTTGCCTT  50

seq1  CAGGGAAACATAAATTAAAACTATTTTGATATTTCATCTTACCTCAGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAACATAAATTAAAACTATTTTGATATTTCATCTTACCTCAGTCA  100

seq1  GAATAGCTTCAATCAATAAAACAAATGATAGTGCAAGCATGTCAGGACGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGCTTCAATCAATAAAACAAATGATAGTGCAAGCATGTCAGGACGT  150

seq1  TAGAAATAGAAGCATATATTAACTACTATTGGGAGTACTAGTTTTGGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATAGAAGCATATATTAACTACTATTGGGAGTACTAGTTTTGGCAA  200

seq1  GGCCAATGTGGTAGTTCATGGGGAAGCAGGGAATATATCTACCTCAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAATGTGGTAGTTCATGGGGAAGCAGGGAATATATCTACCTCAAGAT  250

seq1  GCAGTGATGCCCACTTTTGAACATATACCCAAAGGACTCTATCTCATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGATGCCCACTTTTGAACATATACCCAAAGGACTCTATCTCATTAA  300

seq1  AGATATATTTGTTCATCCATGTTCATTGATGCTGTAGTCATAACAACCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATATTTGTTCATCCATGTTCATTGATGCTGTAGTCATAACAACCAG  350

seq1  AAATTGGAAACTGCCTAGATGTCTGTAACCTGATGAGTGAATAATATTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGAAACTGCCTAGATGTCTGTAACCTGATGAGTGAATAATATTAC  400

seq1  TATGACACATGTTTGTAGCCCTGTTTTACTAAAGACTTTGGAATTTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACACATGTTTGTAGCCCTGTTTTACTAAAGACTTTGGAATTTTAAA  450

seq1  TATTTTAAGTATGGAAAGATCTATAGAGAAACAATAATACAAAATTCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAAGTATGGAAAGATCTATAGAGAAACAATAATACAAAATTCAGC  500

seq1  CAATGTGACTCCATAGAAGAAGTTACATATTTAAAAATGTCCCTTCAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGACTCCATAGAAGAAGTTACATATTTAAAAATGTCCCTTCAAGG  550

seq1  AAACTAGGAGATTTTCAAGAAGAGCAAGGGTTGGAGCATCAGGGTTGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGGAGATTTTCAAGAAGAGCAAGGGTTGGAGCATCAGGGTTGCAG  600

seq1  ATTAAGTTTGCTGTGAACTCTTGGCTATCCTACCTATTAATATATGAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTTTGCTGTGAACTCTTGGCTATCCTACCTATTAATATATGAAGT  650

seq1  TTCTTGCTTTTATCTAGAGCATAGGCTGCACTGGAGCCTTCTTTAATTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCTTTTATCTAGAGCATAGGCTGCACTGGAGCCTTCTTTAATTGA  700

seq1  TAGGATGTTATGGAAGTGACACTGTGTACCATCTGAAACTGGACCATGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATGTTATGGAAGTGACACTGTGTACCATCTGAAACTGGACCATGCA  750

seq1  TTTTATAGTATTTATAGTTTCCAAAAATACTTACTCTGGATGATCCAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAGTATTTATAGTTTCCAAAAATACTTACTCTGGATGATCCAATC  800

seq1  CCCATGGAGAAAGTCTGACTGTTCAGATGATGGTACTATAAGAATCCTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGGAGAAAGTCTGACTGTTCAGATGATGGTACTATAAGAATCCTTA  850

seq1  GCCAAAGGCAGCAATGAAGAGAATGCAACATCAGAAAAAAATGGCCTCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAGGCAGCAATGAAGAGAATGCAACATCAGAAAAAAATGGCCTCTC  900

seq1  AATATAGAGACAGGACACAAGGTGTGCTTAGATAAGAGAGAGAGAAAATA  950
       ||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  -ATATAGAGACAGGACACAAGGTGTGCTTAGATAAGAGAGAGAGGAAATA  949

seq1  TTTTCATGAGTCCCAAACACCCAGATGATGCTGTTAGGAAGAGAAATGAA  1000
      ||||||||||||||||||||||||||||||||| ||||||||| ||||||
seq2  TTTTCATGAGTCCCAAACACCCAGATGATGCTG-TAGGAAGAG-AATGAA  997

seq1  GTTTCAGA-TATACTCCTTCACAATTCGTGACTTTCAAAATTATTTTGTG  1049
      |||||||| ||||||||||||| |||||||||||||||| |  |||||||
seq2  GTTTCAGATTATACTCCTTCAC-ATTCGTGACTTTCAAATTATTTTTGTG  1046

seq1  ACC-AAGTGTA-TTCTGAAGTAAACTA-TTGA-CCAATGATATTTAATGG  1095
      ||| ||||||| ||||||||  ||||| |||| ||||| ||  |||||||
seq2  ACCAAAGTGTATTTCTGAAGGTAACTATTTGACCCAATTATTATTAATGG  1096

seq1  CGACAGCTAGAACTAAG--AAACAATACAATGCT--ACTATTGTTGCTTT  1141
      |||||||||||||||||  || ||||||| ||||   ||||  ||||  |
seq2  CGACAGCTAGAACTAAGGAAACCAATACATTGCTTACCTATCTTTGC--T  1144

seq1  TTCACAATG-GTTTAAAGAAAT---GAGGC-TGAATTTCC  1176
       |||| ||| ||||||||||||   ||||| |||||||||
seq2  ATCACCATGAGTTTAAAGAAATGGAGAGGCGTGAATTTCC  1184


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