BAC Information

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BAC

Clone NameB6Ng01-297A02
Chromosome5 (Build37)
Map Location 132,868,665 - 132,977,953
singlet/doubletdoublet
Overlap geneAuts2
Upstream gene4930563F08Rik
Downstream geneLOC100039731
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297A02.bB6Ng01-297A02.g
ACCGA092473GA092474
length1,090935
definitionB6Ng01-297A02.b B6Ng01-297A02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,868,665 - 132,869,750)(132,977,019 - 132,977,953)
sequence
gaattctttgcatgcaggagttagatctctgacctcgatgagtccctcaa
gaaagcaagccatggtctggaaagaaacaatgagagtccattaggagagc
ttctctctagagtgtgcaattacaagccccctactcttgtgatgaaataa
gagctagattttttttttcaaaaatacccaatgagattgtgacagtgtaa
gtggatttcacgcagaatataatttgtgtattttagccaggtttttaact
gatgaaagataattagcaacttcatgaaagaaaagggtggttttgatttt
gtttactaataaaataaacactttgtttatatttcatttactaaccaaga
aataaaaactgcaaatatgcaaacaaactttaaaggcctctatttatatt
atgctcaccttgataatgaaaggcaaaatgaaccacagagcctggagaga
tggctcagcaattcatagcttgtgctgtttttgctgagggactgagctga
ggttacagcccaaactcagttgcaggaagctcataacctatgtaacttga
gctccaggcggttcaacaccctctcctggcctccaaagacaactgcacac
tgaccctgacatacacgtgcatgtgattttaaaagaatcacacaaatcag
agatgtcatgactaagtattagattaaacttctcaaagcttttctcaact
tagaattgagatctttatatggagaaaggatgaataaaacaaattttttt
aaagccctaccatgaagtggacagggtagggggggtagtggcagggggga
acctgatctggtattgggtgagagaaaacaactgaaaccccgagggccag
cagaaagaatgaaaacagacaacctcaagaaataggaagttgggggaacc
ccccagaatgcaccagagacctggggaggtgagagactcccaggtactca
caggaagggacctttgatgaaattgccagacagttaaggagagggaactt
atagagcccctcctccagcaataacaccttgaccataatgtcctgtctga
aagaatacaggtatggaaatggaaaggagcctgaaggaaa

gaattcattatttcctcttaattcttacctgtttttaactactagacttc
attgattggttaactcagaatcagttggtgggcacagtgatttttctcct
tgggatttttctacccaactttgttggactcttcactagcttctctaatg
ataaaactgggacgtgaatgataatttaaaaagaatagtgtaattaaagc
tcctaactcattgagtggttccttgtcagctatagactcgctgagactga
ctctcagccacacccacctcagcaggggcatggtgtgtgttcctgaggct
gagagtggtgaaaaggaacaacaagaacaacagagaccttagcctttctt
tcccacctgaaagcactccttgaattcttgaacagggtttcaaaaaaatc
tgcttttaaagatacatgtaatttacttttaaaaactgtaatcagaattt
ttgagaaatgtgggccttcggatttagttgctgtggtaaatgcatatcac
ccaggggcggacgcacaaacccaatattgacagggggaggggcgctcaca
tttgggaatacatcgctttcatttcacagggttccctgcctagaaaatac
acacacacacacacacacacacacacacacacacacgtttatcttcaagt
ggaagagaggaacaggggtcataagttttaacttttatatgaagtcatcg
ttttagtaactacattggaaacaaacattccacatgtttagaactgtgaa
acccactgccctggctgcacatagccacgtgccgttttaatactaagatg
cccacggagatagatgccttagctgtcccagaagtcccagagtgacacct
cctctctctgccttggaaacttggttcttgagggaaaggtggattatgtg
gggctgggagttgcaggggctggggggaggggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_132868665_132869750
seq2: B6Ng01-297A02.b_46_1135

seq1  GAATTCTTTGCATGCAGGAGTTAGATCTCTGACCTCGATGAGTCCCTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCATGCAGGAGTTAGATCTCTGACCTCGATGAGTCCCTCAA  50

seq1  GAAAGCAAGCCATGGTCTGGAAAGAAACAATGAGAGTCCATTAGGAGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAAGCCATGGTCTGGAAAGAAACAATGAGAGTCCATTAGGAGAGC  100

seq1  TTCTCTCTAGAGTGTGCAATTACAAGCCCCCTACTCTTGTGATGAAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTAGAGTGTGCAATTACAAGCCCCCTACTCTTGTGATGAAATAA  150

seq1  GAGCTAGATTTTTTTTTTCAAAAATACCCAATGAGATTGTGACAGTGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAGATTTTTTTTTTCAAAAATACCCAATGAGATTGTGACAGTGTAA  200

seq1  GTGGATTTCACGCAGAATATAATTTGTGTATTTTAGCCAGGTTTTTAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTTCACGCAGAATATAATTTGTGTATTTTAGCCAGGTTTTTAACT  250

seq1  GATGAAAGATAATTAGCAACTTCATGAAAGAAAAGGGTGGTTTTGATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAAGATAATTAGCAACTTCATGAAAGAAAAGGGTGGTTTTGATTTT  300

seq1  GTTTACTAATAAAATAAACACTTTGTTTATATTTCATTTACTAACCAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACTAATAAAATAAACACTTTGTTTATATTTCATTTACTAACCAAGA  350

seq1  AATAAAAACTGCAAATATGCAAACAAACTTTAAAGGCCTCTATTTATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAACTGCAAATATGCAAACAAACTTTAAAGGCCTCTATTTATATT  400

seq1  ATGCTCACCTTGATAATGAAAGGCAAAATGAACCACAGAGCCTGGAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCACCTTGATAATGAAAGGCAAAATGAACCACAGAGCCTGGAGAGA  450

seq1  TGGCTCAGCAATTCATAGCTTGTGCTGTTTTTGCTGAGGGACTGAGCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAGCAATTCATAGCTTGTGCTGTTTTTGCTGAGGGACTGAGCTGA  500

seq1  GGTTACAGCCCAAACTCAGTTGCAGGAAGCTCATAACCTATGTAACTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACAGCCCAAACTCAGTTGCAGGAAGCTCATAACCTATGTAACTTGA  550

seq1  GCTCCAGGCGGTTCAACACCCTCTCCTGGCCTCCAAAGACAACTGCACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGGCGGTTCAACACCCTCTCCTGGCCTCCAAAGACAACTGCACAC  600

seq1  TGACCCTGACATACACGTGCATGTGATTTTAAAAGAATCACACAAATCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTGACATACACGTGCATGTGATTTTAAAAGAATCACACAAATCAG  650

seq1  AGATGTCATGACTAAGTATTAGATTAAACTTCTCAAAGCTTTTCTCAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTCATGACTAAGTATTAGATTAAACTTCTCAAAGCTTTTCTCAACT  700

seq1  TAGAATTGAGATCTTTATATGGAGAAAGGATGAATAAAAC-AATTTTTTT  749
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TAGAATTGAGATCTTTATATGGAGAAAGGATGAATAAAACAAATTTTTTT  750

seq1  AAAGCCCTACCATGAAGTGGACAGGGTA-GGGGGGTAGTGGCA-GGGGGA  797
      |||||||||||||||||||||||||||| |||||||||||||| ||||||
seq2  AAAGCCCTACCATGAAGTGGACAGGGTAGGGGGGGTAGTGGCAGGGGGGA  800

seq1  ACCTGATCTGGTATTGGGTGAGAGAAAACAACTGAAACCCCGAGGGCCAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGATCTGGTATTGGGTGAGAGAAAACAACTGAAACCCCGAGGGCCAG  850

seq1  CAGAAAGAATGAAAACAGACAACCTCAGGAAATAGGAAGTTGGGGGAACC  897
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAGAAAGAATGAAAACAGACAACCTCAAGAAATAGGAAGTTGGGGGAACC  900

seq1  CCCCAGAATGCACCAGAGACCT-GGGAGGTGAGAGACTCCCAGG-ACTCA  945
      |||||||||||||||||||||| ||||||||||||||||||||| |||||
seq2  CCCCAGAATGCACCAGAGACCTGGGGAGGTGAGAGACTCCCAGGTACTCA  950

seq1  CAGGAAGGGACCTTTGATGAAA-TGCCAGACAG-TAAGGAGAGGGAACTT  993
      |||||||||||||||||||||| |||||||||| ||||||||||||||||
seq2  CAGGAAGGGACCTTTGATGAAATTGCCAGACAGTTAAGGAGAGGGAACTT  1000

seq1  ATAGAGCCCCT-CTCCAGCAATAACACCTTTGACCCATAATTGTTCCTGT  1042
      ||||||||||| |||||||||||||||| |||| |||||||   ||||||
seq2  ATAGAGCCCCTCCTCCAGCAATAACACC-TTGA-CCATAAT--GTCCTGT  1046

seq1  CTGAAAGAATTACAGGGATGGAAATGGAGAGGAGCCTG-AGGAAA  1086
      ||||||||| |||||| ||||||||||| ||||||||| ||||||
seq2  CTGAAAGAA-TACAGGTATGGAAATGGAAAGGAGCCTGAAGGAAA  1090


seq1: chr5_132977019_132977953
seq2: B6Ng01-297A02.g_67_1001 (reverse)

seq1  CCTCCCCT-CCCCCAGCCCCTGCAACTCCCAGCCCCACATAATCCACCTT  49
      | |||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCTCCCCCCAGCCCCTGCAACTCCCAGCCCCACATAATCCACCTT  50

seq1  TCCCTCAAGAACCAAGTTTCCAAGGCAGAGAGAGGAGGTGTCACTCTGGG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCAAGAACCAAGTTTCCAAGGCAGAGAGAGGAGGTGTCACTCTGGG  100

seq1  ACTTCTGGGACAGCTAAGGCATCTATCTCCGTGGGCATCTTAGTATTAAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGGGACAGCTAAGGCATCTATCTCCGTGGGCATCTTAGTATTAAA  150

seq1  ACGGCACGTGGCTATGTGCAGCCAGGGCAGTGGGTTTCACAGTTCTAAAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCACGTGGCTATGTGCAGCCAGGGCAGTGGGTTTCACAGTTCTAAAC  200

seq1  ATGTGGAATGTTTGTTTCCAATGTAGTTACTAAAACGATGACTTCATATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGAATGTTTGTTTCCAATGTAGTTACTAAAACGATGACTTCATATA  250

seq1  AAAGTTAAAACTTATGACCCCTGTTTCCTCTCTTCCACTTGAAGATAAAC  299
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAAGTTAAAACTTATGACCCCTG-TTCCTCTCTTCCACTTGAAGATAAAC  299

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTTCTAGGCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTTCTAGGCA  349

seq1  GGGAACCCTGTGAAATGAAAGCGATGTATTCCCAAATGTGAGCGCCCCTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACCCTGTGAAATGAAAGCGATGTATTCCCAAATGTGAGCGCCCCTC  399

seq1  CCCCTGTCAATATTGGGTTTGTGCGTCCGCCCCTGGGTGATATGCATTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGTCAATATTGGGTTTGTGCGTCCGCCCCTGGGTGATATGCATTTA  449

seq1  CCACAGCAACTAAATCCGAAGGCCCACATTTCTCAAAAATTCTGATTACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCAACTAAATCCGAAGGCCCACATTTCTCAAAAATTCTGATTACA  499

seq1  GTTTTTAAAAGTAAATTACATGTATCTTTAAAAGCAGATTTTTTTGAAAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAAAAGTAAATTACATGTATCTTTAAAAGCAGATTTTTTTGAAAC  549

seq1  CCTGTTCAAGAATTCAAGGAGTGCTTTCAGGTGGGAAAGAAAGGCTAAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTCAAGAATTCAAGGAGTGCTTTCAGGTGGGAAAGAAAGGCTAAGG  599

seq1  TCTCTGTTGTTCTTGTTGTTCCTTTTCACCACTCTCAGCCTCAGGAACAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTTGTTCTTGTTGTTCCTTTTCACCACTCTCAGCCTCAGGAACAC  649

seq1  ACACCATGCCCCTGCTGAGGTGGGTGTGGCTGAGAGTCAGTCTCAGCGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATGCCCCTGCTGAGGTGGGTGTGGCTGAGAGTCAGTCTCAGCGAG  699

seq1  TCTATAGCTGACAAGGAACCACTCAATGAGTTAGGAGCTTTAATTACACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGCTGACAAGGAACCACTCAATGAGTTAGGAGCTTTAATTACACT  749

seq1  ATTCTTTTTAAATTATCATTCACGTCCCAGTTTTATCATTAGAGAAGCTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTTAAATTATCATTCACGTCCCAGTTTTATCATTAGAGAAGCTA  799

seq1  GTGAAGAGTCCAACAAAGTTGGGTAGAAAAATCCCAAGGAGAAAAATCAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGAGTCCAACAAAGTTGGGTAGAAAAATCCCAAGGAGAAAAATCAC  849

seq1  TGTGCCCACCAACTGATTCTGAGTTAACCAATCAATGAAGTCTAGTAGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCACCAACTGATTCTGAGTTAACCAATCAATGAAGTCTAGTAGTT  899

seq1  AAAAACAGGTAAGAATTAAGAGGAAATAATGAATTC  935
      ||||||||||||||||||||||||||||||||||||
seq2  AAAAACAGGTAAGAATTAAGAGGAAATAATGAATTC  935


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