BAC Information

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BAC

Clone NameB6Ng01-297B11
Chromosome5 (Build37)
Map Location 127,693,278 - 127,694,417
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040327
Downstream geneTmem132c, Slc15a4, Glt1d1, Tmem132d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297B11.bB6Ng01-297B11.g
ACCGA092539GA092540
length1,1511,202
definitionB6Ng01-297B11.b B6Ng01-297B11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactttactacagaattcgggattggaccaccggctgtctgttag
gcacccactggaagtgatttgaaaatgagatttcgaagaaaagttgtggg
gttttagtcctgtaaatcaagagtcctttattggagcgcagccggaatta
gttccttatatgcagtaacagccattctaacctacaaatatgttctaaaa
ttatacagccgaaagaaatatggtaacagccaagtgctggtgcacgacag
agaaatatgcaaggtacaggaaaaggctgctcataccttttgtattttat
tgttgaagcaaacttccctaatacagagaatattggtgtccaaatacaag
gccgagatatgaaataaatgaagttgaaatgagttcttttatgcttctca
cagggtaagtgaatcaaaaacaaaaacaaaaacaaacaaaacaaaacaaa
acaacccccaaaccgcaaggattcccatatatttgcttgaattcccaccc
aggtagccactctgcacatagtccaatcaatatttcaataaaaaccgata
caaacatatagagaaaagtaacctgtctcaatcacacacatgcatgctac
ccaaacgtatcatttcttgactctaagtagggtagcctttaaaaaagaat
tctcatttgaacctgcattcccagctgaggctggcaaactcccctgttgg
tctttgtaccacagtagctacggctgcaagaaatttaaatctgagctgtt
gactacatgccaaagatgactctcttgttagccagttatcagttatgatg
actgttcttggttgtcaacttggctacatctggaattaactaaaatccga
acatctgggtgcacacctgtgaggaactttttttttcctagattaaatca
tttcaagtgggaagacccacttctaatccgactctggaggtgggaaggcc
tgtctttaatctgagccaatactttctgttggcagcctttaataaagaaa
catgggaagaagggtcgctctctctggcaagccattcccttcactgaaca
ttggagcctacttctttgggaattctagcatatatacgaagatcagctga
agaacattccaggtctcatggactggaatactataggattcttggaactt
t

gaattctcacctgatgaataccgaatggcagagaagcacctgaaaaaaat
gttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgaga
ttccacctcacaccagtcagaatggctaagatgaaaaattcaggtgacag
cagatactggcaaggatgtggagaaagaggaactctcctccattgttggt
gggattgcaagcttgtacaaccactctggaaatcagtctggtggttcctc
agaaaattttacatagtactaccagaggatccagcaacacctctcctggg
catatatccagaagatgtcccaaccggtaagaaggacacatgctccacta
tgttcatagcagccttatttataatagccagaaaatggaaagaacccaga
tgcccctcaacagaggaatggatacagaaaatatggtacatttacacaat
ggagtactactccgctattaaaaagaatgaatttatgaaattcctatgca
aatggatggacctggagggcatcatcctgagtgaggtaacccaatcacaa
aggaactcacacaatatgtactcactgataagtggatattagcccagaaa
cttaggatacccaagatataagatacaatttgctaaacgcataaaactca
agaagaacgaagaccaaagtgtggacactttgccccttcttagagttggg
aacaaaacacccatggaaggagttacagagacaaaatttggagctgtgat
gaaaggatggaccatctagtgattgccatatgcagggatccatcccatga
tcagcttccaaacgctgacaccattgcatacactagcaagattttgctga
aaggacccagatatagctgtctcttgtgagactatgccggggcctagcaa
acgcagaagtggatgctcacagtcagctattggatggatcacagggcccc
caatggaggagctagagaaagcacccaagaactaaagggaactgcaaccc
tatagtggacacatatgaactaaccagtatccggagctcttgtctctagc
tgcatatgtatcaaaagaatggcttagtcgcaatgacagcaagagagagg
ctcatggactgcaaacttatattgctcagttacagaatgccagccagagg
acaatgggtgtgttaggagattcatggggtcgtctatctccgctcaatct
ac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_127693278_127694417
seq2: B6Ng01-297B11.b_47_1197 (reverse)

seq1  AAAGGTCCAAGAATCCTATAGTTATTCAGTCCATGAGA-CTGG-ATGT--  46
      |||| |||||||||||||||||  | |||||||||||| |||| ||||  
seq2  AAAGTTCCAAGAATCCTATAGTATTCCAGTCCATGAGACCTGGAATGTTC  50

seq1  CTCAGCTGATCTTTG-GTATATGCTAGAA-TCCCAAAGAAGTAGGCTCCA  94
       |||||||||||| |  |||||||||||| ||||||||||||||||||||
seq2  TTCAGCTGATCTTCGTATATATGCTAGAATTCCCAAAGAAGTAGGCTCCA  100

seq1  ATG-TCAGTGAAGGAATGGGCTTGCCAGAGAGAGCGACCCTTCTT-CCAT  142
      ||| |||||||||| |  ||||||||||||||||||||||||||| ||||
seq2  ATGTTCAGTGAAGGGAATGGCTTGCCAGAGAGAGCGACCCTTCTTCCCAT  150

seq1  G-TTCTTTA-TAAAGGCTGCCAACAGAAAGTA-TGGCTCAGATTAAAGAC  189
      | ||||||| |||||||||||||||||||||| |||||||||||||||||
seq2  GTTTCTTTATTAAAGGCTGCCAACAGAAAGTATTGGCTCAGATTAAAGAC  200

seq1  AGGCCTTCCCACCTCCAGAGTCGGATTAGAAGTGGGTCTTCCCACTTGAA  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTTCCCACCTCCAGAGTCGGATTAGAAGTGGGTCTTCCCACTTGAA  250

seq1  ATGATTTAATCTAGGAAAAAAAAAGTTCCTCACAGGTGTGCACCCAGATG  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTAATCTAGGAAAAAAAAAGTTCCTCACAGGTGTGCACCCAGATG  300

seq1  TTCGGATTTTAGTTAATTCCAGATGTAGCCAAGTTGACAACCAAGAACAG  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGATTTTAGTTAATTCCAGATGTAGCCAAGTTGACAACCAAGAACAG  350

seq1  TCATCATAACTGATAACTGGCTAACAAGAGAGTCATCTTTGGCATGTAGT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATAACTGATAACTGGCTAACAAGAGAGTCATCTTTGGCATGTAGT  400

seq1  CAACAGCTCAGATTTAAATTTCTTGCAGCCGTAGCTACTGTGGTACAAAG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCTCAGATTTAAATTTCTTGCAGCCGTAGCTACTGTGGTACAAAG  450

seq1  ACCAACAGGGGAGTTTGCCAGCCTCAGCTGGGAATGCAGGTTCAAATGAG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACAGGGGAGTTTGCCAGCCTCAGCTGGGAATGCAGGTTCAAATGAG  500

seq1  AATTCTTTTTTAAAGGCTACCCTACTTAGAGTCAAGAAATGATACGTTTG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTTTTAAAGGCTACCCTACTTAGAGTCAAGAAATGATACGTTTG  550

seq1  GGTAGCATGCATGTGTGTGATTGAGACAGGTTACTTTTCTCTATATGTTT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCATGCATGTGTGTGATTGAGACAGGTTACTTTTCTCTATATGTTT  600

seq1  GTATCGGTTTTTATTGAAATATTGATTGGACTATGTGCAGAGTGGCTACC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCGGTTTTTATTGAAATATTGATTGGACTATGTGCAGAGTGGCTACC  650

seq1  TGGGTGGGAATTCAAGCAAATATATGGGAATCCTTGCGGTTTGGGGGTTG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGGAATTCAAGCAAATATATGGGAATCCTTGCGGTTTGGGGGTTG  700

seq1  TTTTGTTTTGTTTTGTTTGTTTTTGTTTTTGTTTTTGATTCACTTACCCT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTGTTTTGTTTGTTTTTGTTTTTGTTTTTGATTCACTTACCCT  750

seq1  GTGAGAAGCATAAAAGAACTCATTTCAACTTCATTTATTTCATATCTCGG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAAGCATAAAAGAACTCATTTCAACTTCATTTATTTCATATCTCGG  800

seq1  CCTTGTATTTGGACACCAATATTCTCTGTATTAGGGAAGTTTGCTTCAAC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTATTTGGACACCAATATTCTCTGTATTAGGGAAGTTTGCTTCAAC  850

seq1  AATAAAATACAAAAGGTATGAGCAGCCTTTTCCTGTACCTTGCATATTTC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATACAAAAGGTATGAGCAGCCTTTTCCTGTACCTTGCATATTTC  900

seq1  TCTGTCGTGCACCAGCACTTGGCTGTTACCATATTTCTTTCGGCTGTATA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCGTGCACCAGCACTTGGCTGTTACCATATTTCTTTCGGCTGTATA  950

seq1  ATTTTAGAACATATTTGTAGGTTAGAATGGCTGTTACTGCATATAAGGAA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGAACATATTTGTAGGTTAGAATGGCTGTTACTGCATATAAGGAA  1000

seq1  CTAATTCCGGCTGCGCTCCAATAAAGGACTCTTGATTTACAGGACTAAAA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTCCGGCTGCGCTCCAATAAAGGACTCTTGATTTACAGGACTAAAA  1050

seq1  CCCCACAACTTTTCTTCGAAATCTCATTTTCAAATCACTTCCAGTGGGTG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACAACTTTTCTTCGAAATCTCATTTTCAAATCACTTCCAGTGGGTG  1100

seq1  CCTAACAGACAGCCGGTGGTCCAATCCCGAATTCTGTAGTAAAGTGAATT  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACAGACAGCCGGTGGTCCAATCCCGAATTCTGTAGTAAAGTGAATT  1150

seq1  C  1140
      |
seq2  C  1151


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