BAC Information

Click to search

BAC

Clone NameB6Ng01-297N04
Chromosome5 (Build37)
Map Location 110,024,091 - 110,024,981
singlet/doubletsinglet
Overlap genenone
Upstream geneGak, Tmem175, Dgkq, Idua, Slc26a1, LOC100042616, Fgfrl1, LOC671564, 1810008K16Rik, EG627479, EG435864, EG667087, LOC100041615, V2r16, LOC545792, EG384219, Vmn2r12, LOC231589, EG231591, LOC667128, EG211223, EG384220, EG636052, EG384221, LOC667159, LOC667171, Tpte2, EG667185, LOC671695, LOC636173
Downstream geneLOC624831, LOC100041734, LOC100042749, LOC667198, 4930522L14Rik, LOC667243, Plcxd1, Gtpbp6, LOC675812, Chfr, Golga3, D5Ertd585e, Pgam5, Pxmp2, Pole, P2rx2, Gm1679, 2410025L10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297N04.bB6Ng01-297N04.g
ACCGA093090GA093091
length1,121895
definitionB6Ng01-297N04.b B6Ng01-297N04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatactggagagaaaccttacaaatgtgatcagtgtggcaaagcc
tttgcacatcacagtaatctcaaagtgcataaaataacaacacatactga
agagacaccttacaagtgtgatcagtgtggtaaagtctttgcatatcata
gtatcttccaagtacataaaagaacacatactcgagagaagccctatgaa
tgtaagcaatgtggcaaagccttttcatgtcaaaattattaccaagtaca
taaaagaacacatactggagagaaaccctatgaatgtaagcaatgtagta
aatcctttgcttctcatggtcaacttagaaaacatgaaagaattcatact
ggagagaaaagttattaatgtatacaatatggtaaagcctagtcacaatc
aacttgcctaaaactatataaaataaaacatactaaagagtaaccctatg
aatataactaatgtggtaaagcctttacagtgatattgaaaggtgtgatg
gtttaaatatacttggaccttggcaagtggccgtattagggagtatagcc
ttttggagtagatttgagaaagtctgtcactgtggtcttggactctgaga
tcctatgcttaagctccaaccagggcagaagagtcttctggctgcgttct
gatctagatgtcgaattcttgtttcttccagtaccatgtctgcttggaca
ctgctgttcttttcaccttgatgataatagactgcacctttgaatctgta
caatacccccaattaatcaattaatgtcgtttataagagctgccttggta
ttggtattttttttcacatcaataaaacccaaattaagacgaattatagc
catatgccttttttttttttggtttttcgagacagggtttctctgtatag
ccctgggctgtcctgaaactcacctttgtagaccaggctgggcctcgaac
tcaagaaatccgcctgcctctgtctcccgagtgctggggattaaaggcgt
gccacaaccaccacccggctgggcatatgccctttatctcagcacttgga
gcagaggcaggttgattttagttcaggtcagccagggttttcctagagaa
accttgtcctgaaaaccataa
gaattcaaagtctgtctgacctacagaaggagttccaggataactatttt
gtttttatatttatctttaactatttaatctctgtcagtcattctttttg
tctgtttttctgtcaagacttcgtagagaaatgtaaaatggcaacataga
ccccatttgtctccatttaaggacaccatgtgtctccattaaggattagg
cctaatttcagaagagttcacaagatatcagctcaaagaacagaccataa
tccagaacagatcataaaaccctctcccaaagaacagcctaggagtaatt
tttaaaatggtgaaatagcttatcttagaatgggtcacctgcactgggca
gccctatttcatcacatggttgaatgttcatgacataggagtgcagatca
ccaaccacctgtgagcccttaacacccaccaatgagatttcagattgcct
aatccttctagggttcacctgtttccctgtaagaagttctgtgtgccttt
gtctgaggtcaccatttagaaaatggttaatccctcaggctagttgtttc
tggagaataaatgctccttgtttttgcatactatgtgcatctggggtctt
ccttcagggatttttggacccttacattttgtgcattggctggaaaaggc
ttagttcctcctggactcaacagtagagcatgttttgaagattaattgac
tctcccacgatcattgaattgggttgtgcctctgtgtgctgtgtgtattt
tgtctttgtcatgttctgagtagtcttttgtcttatttcaatgtggggtg
gtttcttttcttttgtcttgcccaatctggaggccaatgtaaggtaggac
agacgttttaggtaactacctttcttggccgggggtgggggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_110024091_110024981
seq2: B6Ng01-297N04.g_72_966

seq1  GAATTCAAAGTCTGTCTGACCTACAGAAGGAGTTCCAGGATAACTATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGTCTGTCTGACCTACAGAAGGAGTTCCAGGATAACTATTTT  50

seq1  GTTTTTATATTTATCTTTAACTATTTAATCTCTGTCAGTCATTCTTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTATATTTATCTTTAACTATTTAATCTCTGTCAGTCATTCTTTTTG  100

seq1  TCTGTTTTTCTGTCAAGACTTCGTAGAGAAATGTAAAATGGCAACATAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTTCTGTCAAGACTTCGTAGAGAAATGTAAAATGGCAACATAGA  150

seq1  CCCCATTTGTCTCCATTTAAGGACACCATGTGTCTCCATTAAGGATTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTTGTCTCCATTTAAGGACACCATGTGTCTCCATTAAGGATTAGG  200

seq1  CCTAATTTCAGAAGAGTTCACAAGATATCAGCTCAAAGAACAGACCATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATTTCAGAAGAGTTCACAAGATATCAGCTCAAAGAACAGACCATAA  250

seq1  TCCAGAACAGATCATAAAACCCTCTCCCAAAGAACAGCCTAGGAGTAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAACAGATCATAAAACCCTCTCCCAAAGAACAGCCTAGGAGTAATT  300

seq1  TTTAAAATGGTGAAATAGCTTATCTTAGAATGGGTCACCTGCACTGGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATGGTGAAATAGCTTATCTTAGAATGGGTCACCTGCACTGGGCA  350

seq1  GCCCTATTTCATCACATGGTTGAATGTTCATGACATAGGAGTGCAGATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTATTTCATCACATGGTTGAATGTTCATGACATAGGAGTGCAGATCA  400

seq1  CCAACCACCTGTGAGCCCTTAACACCCACCAATGAGATTTCAGATTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCACCTGTGAGCCCTTAACACCCACCAATGAGATTTCAGATTGCCT  450

seq1  AATCCTTCTAGGGTTCACCTGTTTCCCTGTAAGAAGTTCTGTGTGCCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTCTAGGGTTCACCTGTTTCCCTGTAAGAAGTTCTGTGTGCCTTT  500

seq1  GTCTGAGGTCACCATTTAGAAAATGGTTAATCCCTCAGGCTAGTTGTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGGTCACCATTTAGAAAATGGTTAATCCCTCAGGCTAGTTGTTTC  550

seq1  TGGAGAATAAATGCTCCTTGTTTTTGCATACTATGTGCATCTGGGGTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAATAAATGCTCCTTGTTTTTGCATACTATGTGCATCTGGGGTCTT  600

seq1  CCTTCAGGGATTTTTGGACCCTTACATTTTGTGCATTGGCTGGAAAAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGGGATTTTTGGACCCTTACATTTTGTGCATTGGCTGGAAAAGGC  650

seq1  TTAGTTCCTCCTGGACTCAACAGTAGAGCATGTTTTGAAGATTAATTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTCCTCCTGGACTCAACAGTAGAGCATGTTTTGAAGATTAATTGAC  700

seq1  TCTCCCACGATCATTGAATTGGGTTGTGCCTCTGTGTGCTGTGTGTATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCACGATCATTGAATTGGGTTGTGCCTCTGTGTGCTGTGTGTATTT  750

seq1  TGTCTTTGTCATGTTCTGAGTAGTCTTTTGTCTTA-TTCAATGTGGGGTG  799
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGTCTTTGTCATGTTCTGAGTAGTCTTTTGTCTTATTTCAATGTGGGGTG  800

seq1  GTTTCTTTTCTTTTGTC-TGCCCAATCTGGAGGCCAATGT-AGGTAGGAC  847
      ||||||||||||||||| |||||||||||||||||||||| |||||||||
seq2  GTTTCTTTTCTTTTGTCTTGCCCAATCTGGAGGCCAATGTAAGGTAGGAC  850

seq1  AGACG-TTTAGGTAACTACCTT--CTGGCCGGGGGTGGGGTGGTGGG  891
      ||||| ||||||||||||||||   ||||||||||||||  ||||||
seq2  AGACGTTTTAGGTAACTACCTTTCTTGGCCGGGGGTGGG--GGTGGG  895