BAC Information

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BAC

Clone NameB6Ng01-301I19
Chromosome5 (Build37)
Map Location 82,124,978 - 82,182,123
singlet/doubletdoublet
Overlap geneLphn3
Upstream geneLOC100039506, LOC100039384
Downstream geneEG433912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301I19.bB6Ng01-301I19.g
ACCGA095834GA095835
length1,1681,141
definitionB6Ng01-301I19.b B6Ng01-301I19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,180,965 - 82,182,123)(82,124,978 - 82,126,137)
sequence
gaattctttgtttagctctctaccatattttttaatagggttattgtgtt
ctctggagcctaacttataaacaaacaaaatgatgtaataagtcaaagaa
tcaatatagaaagatgatgaataaatacagacatgagcaaatccagttag
ttacaagatacccattttctttgttcaagaattattgctgtgctgaaaat
tattctgggcatgtgcttttgagagaaattctacttgaaaattaaagata
tagctgaaataaattatctaaagagttaaaaaatatcccctgctattata
gattccttttggagagttatatctctggaaagggctaaatatttttttta
tgctgggtaaagggaagtgggaggaaagatggagtaatgagaaatatgtt
cgcgaagttaatccccaagtccaaagatctgctcattgataagttacaat
aagtaatggaaaaagaaggatgcaggccaactgctaatcccattggcttg
gaggccagcacactttggaatgtacaaatcctctggttagcatttgtgtt
tgttgcgtgaaatgtatgtttaatggagcaagagagctgttgccatcctg
actagtctcctgacatttccagctttagaatacagtggatgtcctttcct
ggataaaagactaaaacttcagcaaagaaatacaaaattctctttactta
aatttgtaagtgattgtaatagtaataatgtgtgagcaaaccttttgcat
ttttatatttataccccaatagcatggaacgtgcttgatcaactgattac
atatcacagaagccctgattatctgtatttcttcttcaaatgtgttttat
gttagtgagacagcaccagccgaatttatgcaactagagtttattatcat
tttgtataccactgccagaaggttaaaaggaaaagctatttacagtttaa
tccagaaatctgagtaaaataaagatatgattcttttatatccatatatt
ttaaatcactaagcattagaccacattaaaaattcttataaatattagtt
attgtatatttataaacaccagaaactatttattaacaaagttatttttg
ttttttaacttacagaattttaatcggttcttgaattattacctgtcaaa
aaaaaaaaagcctgcatt

gaattcaatttaaaataatatttttattcagtttaactgttcaattcagg
acagctttgttgatatataatgtaagaaagcacaaaataaatgcccccat
caagaaatgtacggttttccatagaagaagcaaacacatatagtttcatc
atattacagaagagattagagtaagattcttgcagtgttctatggaaata
ctgaatatataaagtcgagaaattttcctagattagagttgttaggctat
aagatttctattaagaaattaatgaattaactgggaagttgtaaagaata
tccctattagagaagacatatgaacaaaatcacaaagaagttaaatatga
cagttgaagatagtatgaaaacaatgaagagtatccatgtaaaattattg
caccacagacaacatggctgcccagcatctggagagaaagaattcagtag
cgatatggctaagttcagcgagcttaacattcatacggaaggactggatt
ctgcacacatactcgcatactacatggcttacatgtctcagtgtttatat
gtaacacataaagtgggcaaattaaattcaaaccgatttacaatatttaa
ctgtcacaacaagggaggcacacaaaacctgaactcagaattctcacaat
gacctgagttctactgaagggtgacaccgtggggtgcactatccaatggc
agcctgtcatctcctttaccctttaaatggatgagacctctttatagggt
ttcagagtatagatgtagtctacaagcagtttaagcacagccacctttct
ggaaagtgatgaccgtgggatgctttccattgtgcatagatactccctga
taccagatgtggaagtgttacactatctacacagtggaacacagttcaat
agtgctaggaaaagaagtctatcaccacgggaggtgcaaaggaaaatata
tattttagttagacatagacacaaagacacataaaacttgttacttagta
ttatactctgagagatgattagcattatatgctgtggacttcactcatga
catcagttagaggtggacagctataggctccaatacatttagaatcaaac
tctgggccgatgttgcatacctacgccatgaatgcaagtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_82180965_82182123
seq2: B6Ng01-301I19.b_46_1213 (reverse)

seq1  AATGCAGCTTTTTTTTTTTTTTTGACA-GTAATAATTC-AGGACCGAT--  46
      |||||||    |||||||||||||||| |||||||||| || ||||||  
seq2  AATGCAG--GCTTTTTTTTTTTTGACAGGTAATAATTCAAGAACCGATTA  48

seq1  AAAATCTGT-AGTT--AAAACAAAATTACTTTTGTTAAT-AATAGTTTCT  92
      ||| ||||| ||||  ||||||||| ||  ||||||||| ||||||||||
seq2  AAATTCTGTAAGTTAAAAAACAAAAATAACTTTGTTAATAAATAGTTTCT  98

seq1  -GTGTTTAT-AATATAC-ATACTTAATATTTTATAAGAATTTTTAATGT-  138
       |||||||| ||||||| |||  ||||| |||||||||||||||||||| 
seq2  GGTGTTTATAAATATACAATAACTAATA-TTTATAAGAATTTTTAATGTG  147

seq1  GTCTAATGCTTAGTGATTT-AAATATATGGATATAAAAGAATCATTATCT  187
      ||||||||||||||||||| |||||||||||||||||||||||| |||||
seq2  GTCTAATGCTTAGTGATTTAAAATATATGGATATAAAAGAATCA-TATCT  196

seq1  TTATTTTACTCAGATTTCTGGATTAAACTGTAAATAGCTTTTCCTTTTAA  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTACTCAGATTTCTGGATTAAACTGTAAATAGCTTTTCCTTTTAA  246

seq1  CCTTCTGGCAGTGGTATACAAAATGATAATAAACTCTAGTTGCATAAATT  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGGCAGTGGTATACAAAATGATAATAAACTCTAGTTGCATAAATT  296

seq1  CGGCTGGTGCTGTCTCACTAACATAAAACACATTTGAAGAAGAAATACAG  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTGGTGCTGTCTCACTAACATAAAACACATTTGAAGAAGAAATACAG  346

seq1  ATAATCAGGGCTTCTGTGATATGTAATCAGTTGATCAAGCACGTTCCATG  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCAGGGCTTCTGTGATATGTAATCAGTTGATCAAGCACGTTCCATG  396

seq1  CTATTGGGGTATAAATATAAAAATGCAAAAGGTTTGCTCACACATTATTA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGGGGTATAAATATAAAAATGCAAAAGGTTTGCTCACACATTATTA  446

seq1  CTATTACAATCACTTACAAATTTAAGTAAAGAGAATTTTGTATTTCTTTG  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTACAATCACTTACAAATTTAAGTAAAGAGAATTTTGTATTTCTTTG  496

seq1  CTGAAGTTTTAGTCTTTTATCCAGGAAAGGACATCCACTGTATTCTAAAG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTTTTAGTCTTTTATCCAGGAAAGGACATCCACTGTATTCTAAAG  546

seq1  CTGGAAATGTCAGGAGACTAGTCAGGATGGCAACAGCTCTCTTGCTCCAT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAATGTCAGGAGACTAGTCAGGATGGCAACAGCTCTCTTGCTCCAT  596

seq1  TAAACATACATTTCACGCAACAAACACAAATGCTAACCAGAGGATTTGTA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATACATTTCACGCAACAAACACAAATGCTAACCAGAGGATTTGTA  646

seq1  CATTCCAAAGTGTGCTGGCCTCCAAGCCAATGGGATTAGCAGTTGGCCTG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCAAAGTGTGCTGGCCTCCAAGCCAATGGGATTAGCAGTTGGCCTG  696

seq1  CATCCTTCTTTTTCCATTACTTATTGTAACTTATCAATGAGCAGATCTTT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTCTTTTTCCATTACTTATTGTAACTTATCAATGAGCAGATCTTT  746

seq1  GGACTTGGGGATTAACTTCGCGAACATATTTCTCATTACTCCATCTTTCC  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTGGGGATTAACTTCGCGAACATATTTCTCATTACTCCATCTTTCC  796

seq1  TCCCACTTCCCTTTACCCAGCATAAAAAAAATATTTAGCCCTTTCCAGAG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTTCCCTTTACCCAGCATAAAAAAAATATTTAGCCCTTTCCAGAG  846

seq1  ATATAACTCTCCAAAAGGAATCTATAATAGCAGGGGATATTTTTTAACTC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACTCTCCAAAAGGAATCTATAATAGCAGGGGATATTTTTTAACTC  896

seq1  TTTAGATAATTTATTTCAGCTATATCTTTAATTTTCAAGTAGAATTTCTC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATAATTTATTTCAGCTATATCTTTAATTTTCAAGTAGAATTTCTC  946

seq1  TCAAAAGCACATGCCCAGAATAATTTTCAGCACAGCAATAATTCTTGAAC  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGCACATGCCCAGAATAATTTTCAGCACAGCAATAATTCTTGAAC  996

seq1  AAAGAAAATGGGTATCTTGTAACTAACTGGATTTGCTCATGTCTGTATTT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAATGGGTATCTTGTAACTAACTGGATTTGCTCATGTCTGTATTT  1046

seq1  ATTCATCATCTTTCTATATTGATTCTTTGACTTATTACATCATTTTGTTT  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCATCTTTCTATATTGATTCTTTGACTTATTACATCATTTTGTTT  1096

seq1  GTTTATAAGTTAGGCTCCAGAGAACACAATAACCCTATTAAAAAATATGG  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATAAGTTAGGCTCCAGAGAACACAATAACCCTATTAAAAAATATGG  1146

seq1  TAGAGAGCTAAACAAAGAATTC  1159
      ||||||||||||||||||||||
seq2  TAGAGAGCTAAACAAAGAATTC  1168


seq1: chr5_82124978_82126137
seq2: B6Ng01-301I19.g_66_1206

seq1  GAATTCAATTTAAAATAATATTTTTATTCAGTTTAACTGTTCAATTCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTAAAATAATATTTTTATTCAGTTTAACTGTTCAATTCAGG  50

seq1  ACAGCTTTGTTGATATATAATGTAAGAAAGCACAAAATAAATGCCCCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTTGTTGATATATAATGTAAGAAAGCACAAAATAAATGCCCCCAT  100

seq1  CAAGAAATGTACGGTTTTCCATAGAAGAAGCAAACACATATAGTTTCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAATGTACGGTTTTCCATAGAAGAAGCAAACACATATAGTTTCATC  150

seq1  ATATTACAGAAGAGATTAGAGTAAGATTCTTGCAGTGTTCTATGGAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTACAGAAGAGATTAGAGTAAGATTCTTGCAGTGTTCTATGGAAATA  200

seq1  CTGAATATATAAAGTCGAGAAATTTTCCTAGATTAGAGTTGTTAGGCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATATATAAAGTCGAGAAATTTTCCTAGATTAGAGTTGTTAGGCTAT  250

seq1  AAGATTTCTATTAAGAAATTAATGAATTAACTGGGAAGTTGTAAAGAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTCTATTAAGAAATTAATGAATTAACTGGGAAGTTGTAAAGAATA  300

seq1  TCCCTATTAGAGAAGACATATGAACAAAATCACAAAGAAGTTAAATATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTATTAGAGAAGACATATGAACAAAATCACAAAGAAGTTAAATATGA  350

seq1  CAGTTGAAGATAGTATGAAAACAATGAAGAGTATCCATGTAAAATTATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGAAGATAGTATGAAAACAATGAAGAGTATCCATGTAAAATTATTG  400

seq1  CACCACAGACAACATGGCTGCCCAGCATCTGGAGAGAAAGAATTCAGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACAGACAACATGGCTGCCCAGCATCTGGAGAGAAAGAATTCAGTAG  450

seq1  CGATATGGCTAAGTTCAGCGAGCTTAACATTCATACGGAAGGACTGGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATATGGCTAAGTTCAGCGAGCTTAACATTCATACGGAAGGACTGGATT  500

seq1  CTGCACACATACTCGCATACTACATGGCTTACATGTCTCAGTGTTTATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACACATACTCGCATACTACATGGCTTACATGTCTCAGTGTTTATAT  550

seq1  GTAACACATAAAGTGGGCAAATTAAATTCAAACCGATTTACAATATTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACACATAAAGTGGGCAAATTAAATTCAAACCGATTTACAATATTTAA  600

seq1  CTGTCACAACAAGGGAGGCACACAAAACCTGAACTCAGAATTCTCACAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACAACAAGGGAGGCACACAAAACCTGAACTCAGAATTCTCACAAT  650

seq1  GACCTGAGTTCTACTGAAGGGTGACACCGTGGGGTGCACTATCCAATGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGAGTTCTACTGAAGGGTGACACCGTGGGGTGCACTATCCAATGGC  700

seq1  AGCCTGTCATCTCCTTTACCCTTTAAATGGATGAGACCTCTTTATAGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTCATCTCCTTTACCCTTTAAATGGATGAGACCTCTTTATAGGGT  750

seq1  TTCAGAGTATAGATGTAGTCTACAAGCAGTTTAAGCACAGCCACCTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGTATAGATGTAGTCTACAAGCAGTTTAAGCACAGCCACCTTTCT  800

seq1  GGAAAGTGATGACCGTGGGATGCTTTCCATTGTGCATAGATACTCCCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTGATGACCGTGGGATGCTTTCCATTGTGCATAGATACTCCCTGA  850

seq1  TACCAGATGTGGAAGGTGTTACACTATCTACACAGTGGAACACAGTTCAA  900
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TACCAGATGTGGAA-GTGTTACACTATCTACACAGTGGAACACAGTTCAA  899

seq1  TAGTGCTAGGAAAAGAAGTCTATCACCACGGGAGGTGCAAAGGAAAATAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCTAGGAAAAGAAGTCTATCACCACGGGAGGTGCAAAGGAAAATAT  949

seq1  ATATTTTAGTTAGACATAGAACAACAAAAGAACACATAAAACTTGTTACC  1000
      |||||||||||||||||||    ||| ||  ||||||||||||||||| |
seq2  ATATTTTAGTTAGACATAG----ACACAAAGACACATAAAACTTGTTA-C  994

seq1  TTAGTTATATACTCTGAGAGATGAATTAGCAATTATATGCTTGTGGACTT  1050
      |||||  |||||||||||||||| |||||| ||||||||| |||||||||
seq2  TTAGTATTATACTCTGAGAGATG-ATTAGC-ATTATATGC-TGTGGACTT  1041

seq1  TCAACTCCATGACATCAGTAAGAGTGGAACAGCTATTAGGGTTCAATACA  1100
         ||| |||||||||||| ||||  | ||||||| |||| | |||||||
seq2  --CACT-CATGACATCAGTTAGAGGTGGACAGCTA-TAGGCTCCAATACA  1087

seq1  TTTTAGAAATTAAAAACTCT-GGCAGAAGGTTTGCATACCTTACGCCAAT  1149
       |||||||     ||||||| ||| || |  ||||||||| |||||||  
seq2  -TTTAGAA---TCAAACTCTGGGCCGATG--TTGCATACC-TACGCCATG  1130

seq1  GATGCAAGTAA  1160
       ||||||||||
seq2  AATGCAAGTAA  1141


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