BAC Information

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BAC

Clone NameB6Ng01-302A23
Chromosome5 (Build37)
Map Location 29,818,234 - 30,025,262
singlet/doubletdoublet
Overlap geneLOC619355, Ube3c
Upstream geneLOC100039258, Rnf32, EG664949, Lmbr1, EG620572, Gm1040, Hlxb9
Downstream geneLOC100039363, EG332993, Dnajb6, EG433865, LOC100039405, LOC100034662, LOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302A23.bB6Ng01-302A23.g
ACCGA096213GA096214
length1,070638
definitionB6Ng01-302A23.b B6Ng01-302A23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,818,234 - 29,819,304)(30,024,625 - 30,025,262)
sequence
gaattcacccttctcctttattaaaaaaaaaaaggtcacagcttaaccac
ctgtctatttgcaacattttatggtcccaagtggtatagtggaggggatc
tggatggagcacctcactgcagcagtcagctggggaggagtgtgactagc
cacttacacacaaacgtgtgaagattgtagggatgctgaaaggggaggac
aggaaagatgatgagcaggcaaggcaggggactagaaagagacctgacaa
tcattggatgcaactcctgaaaggctcatattaaacataaatacacataa
agattttaatataaaatccaaaatgcagattaaagaaaagtaaccagaag
aatggagatgataatcattggaggaaaataggggtgctaaaggattgaca
aatccataaaaattgcaatgaacgatatgatttagtgtgtgtatgtgtta
tatccccacagtcaagtcacctgctccgtgtgcatacacatgtgtcctgc
cagacagattgttcccgttgaactgcagcgaccatgtttcacatctctgg
aatccattacttttgtttaattagaagtctgtacccttagaccagggttg
tgcagtgtaaacagcattttactctcagcttgactgtttgattctgagga
cgagtcttcctttgtatgacttaccagaatgcctttctgctttatctatt
ttgggccaagggtaagatggaattccttccatttatgactaataacattc
agcagtgaacacactctggcatttgctggtgagtttttcctgttttggct
attctgaatagttttacagtgggcatacggatgcagataacgatctaaga
tgttgacttgattccttttggaaaaatgctcgtaagtaatatcgctggat
catatgacaatttatttttatgtttttgaggaatcttactgccagtcatc
ctagcaggagtaatttacatatccatgggtggtgtgcataggtctcttcc
tctacattccttttccaacacggcctctcgtcttcacaatacagcctttc
tagaggtggcttctgacctg
gaattccttgaaggtaggagtagcctggccagctactcagctctgctcat
ctgtctacactgagctcaatggtccctgccttatggggcgtggctccttg
agtcattcctgctccacccagagcttggcgtgtgacctccgtgccctgga
atgtgtggctcctgatgtactttgcacctctcatctttcccagcctgcac
tgtaaatggacacctgatcctggaagctctacccttctcccagtccttca
atagctctttggattacctgaataattcccaaaagcctttgcaaggccac
tttcccttccatcttcctcttttttacatggtcagtcctacgtagtgaaa
attttggtttctttaaaaaactcagttatgggggttggagagatggctca
gtggttaagagcactaactactcttccggaggttctgagttcaattccca
gcaactacatggtggcttacaaccatctgtaatgggatctgatgccctct
tttggtgtgtgtctgaagacagctgcagtgtactcatataaataaaaata
aataaatctttaaaaacccagttatgttatgtgaatatatatttgtttta
ttatttatttatttatttatttatttatttatttgcgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_29818234_29819304
seq2: B6Ng01-302A23.b_44_1113

seq1  GAATTCACCCTTCTCCTTTATTAAAAAAAAAAAGGTCACAGCTTAACCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCTTCTCCTTTATTAAAAAAAAAAAGGTCACAGCTTAACCAC  50

seq1  CTGTCTATTTGCAACATTTTATGGTCCCAAGTGGTATAGTGGAGGGGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTATTTGCAACATTTTATGGTCCCAAGTGGTATAGTGGAGGGGATC  100

seq1  TGGATGGAGCACCTCACTGCAGCAGTCAGCTGGGGAGGAGTGTGACTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGAGCACCTCACTGCAGCAGTCAGCTGGGGAGGAGTGTGACTAGC  150

seq1  CACTTACACACAAACGTGTGAAGATTGTAGGGATGCTGAAAGGGGAGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTACACACAAACGTGTGAAGATTGTAGGGATGCTGAAAGGGGAGGAC  200

seq1  AGGAAAGATGATGAGCAGGCAAGGCAGGGGACTAGAAAGAGACCTGACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGATGATGAGCAGGCAAGGCAGGGGACTAGAAAGAGACCTGACAA  250

seq1  TCATTGGATGCAACTCCTGAAAGGCTCATATTAAACATAAATACACATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGATGCAACTCCTGAAAGGCTCATATTAAACATAAATACACATAA  300

seq1  AGATTTTAATATAAAATCCAAAATGCAGATTAAAGAAAAGTAACCAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTAATATAAAATCCAAAATGCAGATTAAAGAAAAGTAACCAGAAG  350

seq1  AATGGAGATGATAATCATTGGAGGAAAATAGGGGTGCTAAAGGATTGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGATGATAATCATTGGAGGAAAATAGGGGTGCTAAAGGATTGACA  400

seq1  AATCCATAAAAATTGCAATGAACGATATGATTTAGTGTGTGTATGTGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATAAAAATTGCAATGAACGATATGATTTAGTGTGTGTATGTGTTA  450

seq1  TATCCCCACAGTCAAGTCACCTGCTCCGTGTGCATACACATGTGTCCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCCACAGTCAAGTCACCTGCTCCGTGTGCATACACATGTGTCCTGC  500

seq1  CAGACAGATTGTTCCCGTTGAACTGCAGCGACCATGTTTCACATCTCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGATTGTTCCCGTTGAACTGCAGCGACCATGTTTCACATCTCTGG  550

seq1  AATCCATTACTTTTGTTTAATTAGAAGTCTGTACCCTTAGACCAGGGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATTACTTTTGTTTAATTAGAAGTCTGTACCCTTAGACCAGGGTTG  600

seq1  TGCAGTGTAAACAGCATTTTACTCTCAGCTTGACTGTTTGATTCTGAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGTAAACAGCATTTTACTCTCAGCTTGACTGTTTGATTCTGAGGA  650

seq1  CGAGTCTTCCTTTGTATGACTTACCAGAATGCCTTTCTGCTTTATCTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTCTTCCTTTGTATGACTTACCAGAATGCCTTTCTGCTTTATCTATT  700

seq1  TTGGGCCAAGGGTAAGATGGAATTCCTTCCATTTATGACTAATAACATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCCAAGGGTAAGATGGAATTCCTTCCATTTATGACTAATAACATTC  750

seq1  AGCAGTGAACACACTCTGGCATTTGCTGGTGAGTTTTTCCTGTTTTGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGAACACACTCTGGCATTTGCTGGTGAGTTTTTCCTGTTTTGGCT  800

seq1  ATTCTGAATAGTTTTACAGTGGGCATACGGATGCAGATAACGATCTAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAATAGTTTTACAGTGGGCATACGGATGCAGATAACGATCTAAGA  850

seq1  TGTTGACTTGATTCCTTTTGG-AAAATGCTCGTAAGTAATATCGCTGGAT  899
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGTTGACTTGATTCCTTTTGGAAAAATGCTCGTAAGTAATATCGCTGGAT  900

seq1  CATATGACAATTTTATTTTTATGTTTTTGAGGAATCTTACTGCCAGTCAT  949
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CATATGACAA-TTTATTTTTATGTTTTTGAGGAATCTTACTGCCAGTCAT  949

seq1  CCTAGCAGGAGTAATTTACATATCCAT-GGTGGTGTGCATAGGGTCTCTT  998
      ||||||||||||||||||||||||||| ||||||||||||| |||||| |
seq2  CCTAGCAGGAGTAATTTACATATCCATGGGTGGTGTGCATA-GGTCTC-T  997

seq1  TCCTCTACAT--CCTTTCCAACACGGGCCTCTCGTCTTCACAATTACAGC  1046
      ||||||||||  | |||||||||| |||||||||||||||||| ||||||
seq2  TCCTCTACATTCCTTTTCCAACAC-GGCCTCTCGTCTTCACAA-TACAGC  1045

seq1  CTTTCTAGAAGGTGCTTCTGACCTG  1071
      ||||||||| |  ||||||||||||
seq2  CTTTCTAGAGGTGGCTTCTGACCTG  1070

seq1: chr5_30024625_30025262
seq2: B6Ng01-302A23.g_65_702 (reverse)

seq1  AAGCAAATAAATAAATAAATAAATAAATAAATAAATAATAAAACAAATAT  50
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCAAATAAATAAATAAATAAATAAATAAATAAATAATAAAACAAATAT  50

seq1  ATATTCACATAACATAACTGGGTTTTTAAAGATTTATTTATTTTTATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCACATAACATAACTGGGTTTTTAAAGATTTATTTATTTTTATTTA  100

seq1  TATGAGTACACTGCAGCTGTCTTCAGACACACACCAAAAGAGGGCATCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGTACACTGCAGCTGTCTTCAGACACACACCAAAAGAGGGCATCAG  150

seq1  ATCCCATTACAGATGGTTGTAAGCCACCATGTAGTTGCTGGGAATTGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATTACAGATGGTTGTAAGCCACCATGTAGTTGCTGGGAATTGAAC  200

seq1  TCAGAACCTCCGGAAGAGTAGTTAGTGCTCTTAACCACTGAGCCATCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACCTCCGGAAGAGTAGTTAGTGCTCTTAACCACTGAGCCATCTCT  250

seq1  CCAACCCCCATAACTGAGTTTTTTAAAGAAACCAAAATTTTCACTACGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCCCCATAACTGAGTTTTTTAAAGAAACCAAAATTTTCACTACGTA  300

seq1  GGACTGACCATGTAAAAAAGAGGAAGATGGAAGGGAAAGTGGCCTTGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGACCATGTAAAAAAGAGGAAGATGGAAGGGAAAGTGGCCTTGCAA  350

seq1  AGGCTTTTGGGAATTATTCAGGTAATCCAAAGAGCTATTGAAGGACTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTTGGGAATTATTCAGGTAATCCAAAGAGCTATTGAAGGACTGGG  400

seq1  AGAAGGGTAGAGCTTCCAGGATCAGGTGTCCATTTACAGTGCAGGCTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGTAGAGCTTCCAGGATCAGGTGTCCATTTACAGTGCAGGCTGGG  450

seq1  AAAGATGAGAGGTGCAAAGTACATCAGGAGCCACACATTCCAGGGCACGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGAGAGGTGCAAAGTACATCAGGAGCCACACATTCCAGGGCACGG  500

seq1  AGGTCACACGCCAAGCTCTGGGTGGAGCAGGAATGACTCAAGGAGCCACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACACGCCAAGCTCTGGGTGGAGCAGGAATGACTCAAGGAGCCACG  550

seq1  CCCCATAAGGCAGGGACCATTGAGCTCAGTGTAGACAGATGAGCAGAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATAAGGCAGGGACCATTGAGCTCAGTGTAGACAGATGAGCAGAGCT  600

seq1  GAGTAGCTGGCCAGGCTACTCCTACCTTCAAGGAATTC  638
      ||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGCTGGCCAGGCTACTCCTACCTTCAAGGAATTC  638