BAC Information

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BAC

Clone NameB6Ng01-303H21
Chromosome5 (Build37)
Map Location 81,405,996 - 81,558,072
singlet/doubletdoublet
Overlap geneLphn3
Upstream geneLOC100039506, LOC100039384
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303H21.bB6Ng01-303H21.g
ACCGA097280GA097281
length1,0871,052
definitionB6Ng01-303H21.b B6Ng01-303H21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,556,976 - 81,558,072)(81,405,996 - 81,407,051)
sequence
gaattctgtgcaagaagtgaatgcctacgtgcaccaactttccaactttt
gttttaaaagttctgatgattctttaaagggaattgctaccaaccctgag
gtcctgggagaattacttgggccccatggttgaaggacagtacacactct
cacaagttgtcctctcactttcattcacatgctatggtacatagtgtgtg
tatatgtggacatgcaagtgagcttgtgtacatgtgtacgtgtccacgag
tgtttgcatgtgcgcgtgcacgcacacaaacacacacacaatcacacagt
taatatttaaataaataatcaagaagttattttttcctaaacaggaaaaa
tgcctatctctggtttttacttaaaatattagactaacttttccccaaag
attccatcagtaggttgtacctcaccatcttaggctctatgcaaattctc
ttctcaagtcagtgacctcagataccagaccttcactcacccttgcattt
ctttgcttcatattctcaccctaccatttcttatctttactctgtcaata
aaagccaagatgctcacggatacaaaggttttacagaaccagttcttgaa
cataatttacatcgatttcccccatttcggttcatgttttcatcaggacc
acatatgcatcattctcttctgctcctaggacatatcttaagatcagagg
ggatagtataatttttacattgaaattgggaaatcacatggaaagttatt
cttcaggtaaatttaatgtctgcgttgtagatatcttcaaactactttct
acgcatttatttcttggcttggccaagtttgcttaggaagctatgatatt
gattggtaataaggtcttgcctttggttctttactggggtgtattttaaa
gcctaatgttaagtttctaaaatattggccattaagtcattttatgatta
ttttttcataatcgtcttcctcagtgctgatattgtttctatgaattcaa
ggaaaattcttggtcaaacgctgacttgtttttgttccccacagacagtc
atggggcaaacacaaagaagatactgctagccctttt

gaattcaaataaaaatgcacaggtaaaatacattctcaaaatcctgattt
tgacaatttacaattactgaatggtttaaacccagagcaacatttctaaa
gctcctggtggaactttaaccttttacaacaggcagtctagatcttcgtg
tcacttacattttgtgttttgtttgagtttttggtttgcacacagcagat
aagtcattgcccattgtggccagcagtaaatgagaaattatttttatggt
ttgatctcttagtgatgtctgaaattaggttaatagattatgaaagttat
tactaggtgagtgagagctgaaaggtaatgtgctttccttaacggttttt
aatttttgaggtcaaagtataaagaccatcatgtccacaagaatacagtc
tctcttacatacctgaacacacaaggcacaaggcatcctttgtctcctga
gatgcacttaccactatggattgtaggctgtagctctatgtgtatgtgtg
tgcccatgtgtccacccctcagaaagtgtgtttctcactctcagtttgag
atatttttctaattccagagaaaaactaacaattaggttaaaattcaatt
gaggggattatgctctaattggtatacaagaataaaaagaatgcaaaaat
taaatattcttcaggttacaagaaagtaatttcatatctaagagtgtatt
tgtgatagaatagtaaaatttcttattcaaaaaattagatatatttttag
accagaaacacatttttaagaaatgagtccttggtaaattcatagaaaat
ttaataacaatcatttcctatcacagagggtgttttttattcctctaagt
ataatataagcacatatttttatttgggtttacatttcctaatcgaattt
tactttttaatgatcaaataagagacattcattccaacatgatacttgag
atgtggaaatgcaacttgtgtttaagtaaactgaatcattatttttacac
tttcaattcaatagtaatattattctgtaaatatcaacttgaagatcatt
tt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_81556976_81558072
seq2: B6Ng01-303H21.b_45_1131 (reverse)

seq1  AAAAGGGCTAGCAGTTATCTTTCTTTGGTGTTTGCCCCCATTGACTGTCC  50
      |||||||||||||| |||| |||||| |||||||||||   |||||||| 
seq2  AAAAGGGCTAGCAG-TATC-TTCTTT-GTGTTTGCCCC--ATGACTGTC-  44

seq1  TGGTGGGGAACAAAAACCAAGTCAGCCGTTTTGACAAGAA-TTTCCTTGA  99
        |||||||||||||| |||||||| |||||   |||||| |||||||||
seq2  -TGTGGGGAACAAAAA-CAAGTCAG-CGTTTGACCAAGAATTTTCCTTGA  91

seq1  ATTCCATAGAAACAAATATCAGCACTGAGGAAGACGATTATGAAAAAATA  149
      ||| ||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATT-CATAGAAAC-AATATCAGCACTGAGGAAGACGATTATGAAAAAATA  139

seq1  ATCATAAAATGACTTAATGGCCAATATTTTAGAAACTTAACATTAGGCTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAAAATGACTTAATGGCCAATATTTTAGAAACTTAACATTAGGCTT  189

seq1  TAAAATACACCCCAGTAAAGAACCAAAGGCAAGACCTTATTACCAATCAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATACACCCCAGTAAAGAACCAAAGGCAAGACCTTATTACCAATCAA  239

seq1  TATCATAGCTTCCTAAGCAAACTTGGCCAAGCCAAGAAATAAATGCGTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATAGCTTCCTAAGCAAACTTGGCCAAGCCAAGAAATAAATGCGTAG  289

seq1  AAAGTAGTTTGAAGATATCTACAACGCAGACATTAAATTTACCTGAAGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGTTTGAAGATATCTACAACGCAGACATTAAATTTACCTGAAGAA  339

seq1  TAACTTTCCATGTGATTTCCCAATTTCAATGTAAAAATTATACTATCCCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTCCATGTGATTTCCCAATTTCAATGTAAAAATTATACTATCCCC  389

seq1  TCTGATCTTAAGATATGTCCTAGGAGCAGAAGAGAATGATGCATATGTGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATCTTAAGATATGTCCTAGGAGCAGAAGAGAATGATGCATATGTGG  439

seq1  TCCTGATGAAAACATGAACCGAAATGGGGGAAATCGATGTAAATTATGTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATGAAAACATGAACCGAAATGGGGGAAATCGATGTAAATTATGTT  489

seq1  CAAGAACTGGTTCTGTAAAACCTTTGTATCCGTGAGCATCTTGGCTTTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACTGGTTCTGTAAAACCTTTGTATCCGTGAGCATCTTGGCTTTTA  539

seq1  TTGACAGAGTAAAGATAAGAAATGGTAGGGTGAGAATATGAAGCAAAGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGAGTAAAGATAAGAAATGGTAGGGTGAGAATATGAAGCAAAGAA  589

seq1  ATGCAAGGGTGAGTGAAGGTCTGGTATCTGAGGTCACTGACTTGAGAAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAGGGTGAGTGAAGGTCTGGTATCTGAGGTCACTGACTTGAGAAGA  639

seq1  GAATTTGCATAGAGCCTAAGATGGTGAGGTACAACCTACTGATGGAATCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGCATAGAGCCTAAGATGGTGAGGTACAACCTACTGATGGAATCT  689

seq1  TTGGGGAAAAGTTAGTCTAATATTTTAAGTAAAAACCAGAGATAGGCATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAAAAGTTAGTCTAATATTTTAAGTAAAAACCAGAGATAGGCATT  739

seq1  TTTCCTGTTTAGGAAAAAATAACTTCTTGATTATTTATTTAAATATTAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGTTTAGGAAAAAATAACTTCTTGATTATTTATTTAAATATTAAC  789

seq1  TGTGTGATTGTGTGTGTGTTTGTGTGCGTGCACGCGCACATGCAAACACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGATTGTGTGTGTGTTTGTGTGCGTGCACGCGCACATGCAAACACT  839

seq1  CGTGGACACGTACACATGTACACAAGCTCACTTGCATGTCCACATATACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGACACGTACACATGTACACAAGCTCACTTGCATGTCCACATATACA  889

seq1  CACACTATGTACCATAGCATGTGAATGAAAGTGAGAGGACAACTTGTGAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTATGTACCATAGCATGTGAATGAAAGTGAGAGGACAACTTGTGAG  939

seq1  AGTGTGTACTGTCCTTCAACCATGGGGCCCAAGTAATTCTCCCAGGACCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTACTGTCCTTCAACCATGGGGCCCAAGTAATTCTCCCAGGACCT  989

seq1  CAGGGTTGGTAGCAATTCCCTTTAAAGAATCATCAGAACTTTTAAAACAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTGGTAGCAATTCCCTTTAAAGAATCATCAGAACTTTTAAAACAA  1039

seq1  AAGTTGGAAAGTTGGTGCACGTAGGCATTCACTTCTTGCACAGAATTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGAAAGTTGGTGCACGTAGGCATTCACTTCTTGCACAGAATTC  1087


seq1: chr5_81405996_81407051
seq2: B6Ng01-303H21.g_65_1116

seq1  GAATTCAAATAAAAATGCACAGGTAAAATACATTCTCAAAATCCTGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATAAAAATGCACAGGTAAAATACATTCTCAAAATCCTGATTT  50

seq1  TGACAATTTACAATTACTGAATGGTTTAAACCCAGAGCAACATTTCTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATTTACAATTACTGAATGGTTTAAACCCAGAGCAACATTTCTAAA  100

seq1  GCTCCTGGTGGAACTTTAACCTTTTACAACAGGCAGTCTAGATCTTCGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGGTGGAACTTTAACCTTTTACAACAGGCAGTCTAGATCTTCGTG  150

seq1  TCACTTACATTTTGTGTTTTGTTTGAGTTTTTGGTTTGCACACAGCAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTACATTTTGTGTTTTGTTTGAGTTTTTGGTTTGCACACAGCAGAT  200

seq1  AAGTCATTGCCCATTGTGGCCAGCAGTAAATGAGAAATTATTTTTATGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATTGCCCATTGTGGCCAGCAGTAAATGAGAAATTATTTTTATGGT  250

seq1  TTGATCTCTTAGTGATGTCTGAAATTAGGTTAATAGATTATGAAAGTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTCTTAGTGATGTCTGAAATTAGGTTAATAGATTATGAAAGTTAT  300

seq1  TACTAGGTGAGTGAGAGCTGAAAGGTAATGTGCTTTCCTTAACGGTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGGTGAGTGAGAGCTGAAAGGTAATGTGCTTTCCTTAACGGTTTTT  350

seq1  AATTTTTGAGGTCAAAGTATAAAGACCATCATGTCCACAAGAATACAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTGAGGTCAAAGTATAAAGACCATCATGTCCACAAGAATACAGTC  400

seq1  TCTCTTACATACCTGAACACACAAGGCACAAGGCATCCTTTGTCTCCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTACATACCTGAACACACAAGGCACAAGGCATCCTTTGTCTCCTGA  450

seq1  GATGCACTTACCACTATGGATTGTAGGCTGTAGCTCTATGTGTATGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCACTTACCACTATGGATTGTAGGCTGTAGCTCTATGTGTATGTGTG  500

seq1  TGCCCATGTGTCCACCCCTCAGAAAGTGTGTTTCTCACTCTCAGTTTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATGTGTCCACCCCTCAGAAAGTGTGTTTCTCACTCTCAGTTTGAG  550

seq1  ATATTTTTCTAATTCCAGAGAAAAACTAACAATTAGGTTAAAATTCAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTCTAATTCCAGAGAAAAACTAACAATTAGGTTAAAATTCAATT  600

seq1  GAGGGGATTATGCTCTAATTGGTATACAAGAATAAAAAGAATGCAAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGATTATGCTCTAATTGGTATACAAGAATAAAAAGAATGCAAAAAT  650

seq1  TAAATATTCTTCAGGTTACAAGAAAGTAATTTCATATCTAAGAGTGTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTCTTCAGGTTACAAGAAAGTAATTTCATATCTAAGAGTGTATT  700

seq1  TGTGATAGAATAGTAAAATTTCTTATTCAAAAAATTAGATATATTTTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATAGAATAGTAAAATTTCTTATTCAAAAAATTAGATATATTTTTAG  750

seq1  ACCAGAAACACATTTTTAAGAAATGAGTCCTTGGTAAATTCATAGAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAAACACATTTTTAAGAAATGAGTCCTTGGTAAATTCATAGAAAAT  800

seq1  TTAATAACAATCATTTCCTATCACAGAGGGTGTTTTTTATTCCTCTAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAACAATCATTTCCTATCACAGAGGGTGTTTTTTATTCCTCTAAGT  850

seq1  ATAATATAAGCACATATTTTTATTTGGGTTTACATTTCCTAATCGAATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATAAGCACATATTTTTATTTGGGTTTACATTTCCTAATCGAATTT  900

seq1  TACTTTTTAATGATCAAATAAGAGACATTCATTCCAACATGATACTTGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTAATGATCAAATAAGAGACATTCATTCCAACATGATACTTGAG  950

seq1  ATTGTGGAAATGCAAACTTGTGTTTAAGTAAACTGAATCATTATTTTAAC  1000
      | ||||||||||| ||||||||||||||||||||||||||||||||| ||
seq2  A-TGTGGAAATGC-AACTTGTGTTTAAGTAAACTGAATCATTATTTTTAC  998

seq1  ACTTTCAATTTCATTAGTAATTATATTCTGTAAAATATCAACTTGAAGAT  1050
      |||||||| |||| |||||||  |||||||| ||||||||||||||||||
seq2  ACTTTCAA-TTCAATAGTAATATTATTCTGT-AAATATCAACTTGAAGAT  1046

seq1  CATTTT  1056
      ||||||
seq2  CATTTT  1052


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