BAC Information

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BAC

Clone NameB6Ng01-303N02
Chromosome5 (Build37)
Map Location 125,319,727 - 125,474,246
singlet/doubletdoublet
Overlap geneCcdc92, Zfp664
Upstream geneGpr81, Denr, Ccdc62, Hip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1, Sbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2, Atp6v0a2, Dnahc10
Downstream gene3110032G18Rik, Ncor2, Scarb1, Ubc, Dhx37, Bri3bp, Aacs, Tmem132b, EG231736, LOC100039178
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303N02.bB6Ng01-303N02.g
ACCGA097526GA097527
length5301,128
definitionB6Ng01-303N02.b B6Ng01-303N02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,473,711 - 125,474,246)(125,319,727 - 125,320,846)
sequence
tattccactctggtccctcatgccatgccacagagaccctgtagctgtcc
cattccaaccccgaggacttaaagatgccacgtcttgccagagggacacc
ctctttgggaggtaaacccgcagcttgaccctggaggaattcagccagag
tggatactgttttcttctggaaggttccctggctgccgtttaccccgcct
cctggccttcctccctaggactccgtgctgtttttctggcttccttagtt
tggtgacattcgtgaggggaaaaaaaatattgcagtgggtaggaaggtct
tgctcaaaatccaaatggaagagaaaaacaagagcagagaaggttagaaa
ataaagatagaaaagcctggctggaagctgtgaatgtagttatcccaggg
ttggagaagcagaggaggtcatcctgggctacatagtaaatctgagacca
agcctgggctacaggaccatgtctcaaaaaaaaaaaaaaaaaaaaaaaaa
aaaaaggggggggagtggggattggggagg
gaattctcttccttatcctccctgaatataccccagcagtactaggtcag
cgagcagccgcctcttgaactgcagactgcactgtggctgagtaccgcag
gcatctgctgctctagggcaaggctggcagctgtgtgcccagtgcttcca
tcatactgtgcagaacacggtcacttgcaggtgtgtgggtcaccaaggat
taatcatgtggccatatcagcatggggagtgggcctcgtgcagcagcgga
cccgactccacatcccgacagtggtctggtcagcagccatgagcctgcac
ccacctgtgcagtgctgctgcagccgccggatctcggcgtgcagcccctt
gagtgtgctggcgtgctcccgctggaggaagagcaggttcttctgtgcac
tgtgcagctggttctccaggtttgtggctgccatgctgacatccaggtga
cctaccggaaacataagactctggtcactgtttcaagcacgagggttgag
agaagatgggctctgggtacacatcatggaaatatgtgggagcagatgag
gtcctggggctccaggaaccccttctgactgctggggcacaggcccttaa
ctcatctctcacagagcacctgccacacatcagctctatgtgaggaccag
ctgagggcaggagtggcacccagtacagggcgccaggctgctgcttgttc
tggagaggaagcaggtctgaggcggatgaagagtcagcagcatagagcag
ggtttcttcaaactcagaaccctcaagtctaggtgctaccttcccagatg
tcctgacttatgtgactggccctaccctcaatttcaactggagcaatatg
aagtcaggccagctttctagaataattcaagacacctgccccagcactga
gaaacacttaggacagaatgcagaccagtctatgcagctctcagtgtctt
tcccatgggccatgctagagagcactccctgcagaagcccatggctcaag
ggctgccagcatgccgatgacatctgctcagtggtggtgcttgtgggtgc
gacagcacagccgcttgctccccactttcaggagttgttgtcacccacta
agaaccttgtccccacaggaacttcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_125473711_125474246
seq2: B6Ng01-303N02.b_46_581 (reverse)

seq1  CCTCCCCAAT-CCCACTCCCCACCTCTTTTTTTTTTTTTTTTTTTTTTTT  49
      |||||||||| |||||||||| || |||||||||||||||||||||||||
seq2  CCTCCCCAATCCCCACTCCCC-CCCCTTTTTTTTTTTTTTTTTTTTTTTT  49

seq1  TTTTTTGAGACATGGTCCTGTAGCCCAGGCTTGGTCTCAGATTTACTATG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGAGACATGGTCCTGTAGCCCAGGCTTGGTCTCAGATTTACTATG  99

seq1  TAGCCCAGGATGACCTCCTCTGCTTCTCCAACCCTGGGATAACTACATTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCAGGATGACCTCCTCTGCTTCTCCAACCCTGGGATAACTACATTC  149

seq1  ACAGCTTCCAGCCAGGCTTTTCTATCTTTATTTTCTAACCTTCTCTGCTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTCCAGCCAGGCTTTTCTATCTTTATTTTCTAACCTTCTCTGCTC  199

seq1  TTGTTTTTCTCTTCCATTTGGATTTTGAGCAAGACCTTCCTACCCACTGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTCTCTTCCATTTGGATTTTGAGCAAGACCTTCCTACCCACTGC  249

seq1  AATATTTTTTTTCCCCTCACGAATGTCACCAAACTAAGGAAGCCAGAAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTTTTTCCCCTCACGAATGTCACCAAACTAAGGAAGCCAGAAAA  299

seq1  ACAGCACGGAGTCCTAGGGAGGAAGGCCAGGAGGCGGGGTAAACGGCAGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACGGAGTCCTAGGGAGGAAGGCCAGGAGGCGGGGTAAACGGCAGC  349

seq1  CAGGGAACCTTCCAGAAGAAAACAGTATCCACTCTGGCTGAATTCCTCCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAACCTTCCAGAAGAAAACAGTATCCACTCTGGCTGAATTCCTCCA  399

seq1  GGGTCAAGCTGCGGGTTTACCTCCCAAAGAGGGTGTCCCTCTGGCAAGAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAAGCTGCGGGTTTACCTCCCAAAGAGGGTGTCCCTCTGGCAAGAC  449

seq1  GTGGCATCTTTAAGTCCTCGGGGTTGGAATGGGACAGCTACAGGGTCTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCATCTTTAAGTCCTCGGGGTTGGAATGGGACAGCTACAGGGTCTCT  499

seq1  GTGGCATGGCATGAGGGACCAGAGTGGAATAGAATTC  536
      |||||||||||||||||||||||||||||||||||||
seq2  GTGGCATGGCATGAGGGACCAGAGTGGAATAGAATTC  536

seq1: chr5_125319727_125320846
seq2: B6Ng01-303N02.g_67_1194

seq1  GAATTCTCTTCCTTATCCTCCCTGAATATACCCCAGCAGTACTAGGTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCCTTATCCTCCCTGAATATACCCCAGCAGTACTAGGTCAG  50

seq1  CGAGCAGCCGCCTCTTGAACTGCAGACTGCACTGTGGCTGAGTACCGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCAGCCGCCTCTTGAACTGCAGACTGCACTGTGGCTGAGTACCGCAG  100

seq1  GCATCTGCTGCTCTAGGGCAAGGCTGGCAGCTGTGTGCCCAGTGCTTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGCTGCTCTAGGGCAAGGCTGGCAGCTGTGTGCCCAGTGCTTCCA  150

seq1  TCATACTGTGCAGAACACGGTCACTTGCAGGTGTGTGGGTCACCAAGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACTGTGCAGAACACGGTCACTTGCAGGTGTGTGGGTCACCAAGGAT  200

seq1  TAATCATGTGGCCATATCAGCATGGGGAGTGGGCCTCGTGCAGCAGCGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATGTGGCCATATCAGCATGGGGAGTGGGCCTCGTGCAGCAGCGGA  250

seq1  CCCGACTCCACATCCCGACAGTGGTCTGGTCAGCAGCCATGAGCCTGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGACTCCACATCCCGACAGTGGTCTGGTCAGCAGCCATGAGCCTGCAC  300

seq1  CCACCTGTGCAGTGCTGCTGCAGCCGCCGGATCTCGGCGTGCAGCCCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGTGCAGTGCTGCTGCAGCCGCCGGATCTCGGCGTGCAGCCCCTT  350

seq1  GAGTGTGCTGGCGTGCTCCCGCTGGAGGAAGAGCAGGTTCTTCTGTGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGCTGGCGTGCTCCCGCTGGAGGAAGAGCAGGTTCTTCTGTGCAC  400

seq1  TGTGCAGCTGGTTCTCCAGGTTTGTGGCTGCCATGCTGACATCCAGGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGCTGGTTCTCCAGGTTTGTGGCTGCCATGCTGACATCCAGGTGA  450

seq1  CCTACCGGAAACATAAGACTCTGGTCACTGTTTCAAGCACGAGGGTTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCGGAAACATAAGACTCTGGTCACTGTTTCAAGCACGAGGGTTGAG  500

seq1  AGAAGATGGGCTCTGGGTACACATCATGGAAATATGTGGGAGCAGATGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATGGGCTCTGGGTACACATCATGGAAATATGTGGGAGCAGATGAG  550

seq1  GTCCTGGGGCTCCAGGAACCCCTTCTGACTGCTGGGGCACAGGCCCTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGGGCTCCAGGAACCCCTTCTGACTGCTGGGGCACAGGCCCTTAA  600

seq1  CTCATCTCTCACAGAGCACCTGCCACACATCAGCTCTATGTGAGGACCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTCTCACAGAGCACCTGCCACACATCAGCTCTATGTGAGGACCAG  650

seq1  CTGAGGGCAGGAGTGGCACCCAGTACAGGGCGCCAGGCTGCTGCTTGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGCAGGAGTGGCACCCAGTACAGGGCGCCAGGCTGCTGCTTGTTC  700

seq1  TGGAGAGGAAGCAGGTCTGAGGCGGATGAAGAGTCAGCAGCATAGAGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGGAAGCAGGTCTGAGGCGGATGAAGAGTCAGCAGCATAGAGCAG  750

seq1  GGTTTCTTCAAACTCAGAACCCTCAAGTCTAGGTGCTACCTTCCCAGATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTTCAAACTCAGAACCCTCAAGTCTAGGTGCTACCTTCCCAGATG  800

seq1  TCCTGACTTATGTGACTGGCCCTACCCTCAATTTCAACTGGAGCAATATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACTTATGTGACTGGCCCTACCCTCAATTTCAACTGGAGCAATATG  850

seq1  AAGTCAGGCCAGCTTTCTAGAATAATTCAAGACACCTGCCCCAGCACTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGGCCAGCTTTCTAGAATAATTCAAGACACCTGCCCCAGCACTGA  900

seq1  GAAACACTTAGGACAGAATGCAGACCAGTCTATGCAGCTCTCAGTGTCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACTTAGGACAGAATGCAGACCAGTCTATGCAGCTCTCAGTGTCTT  950

seq1  TCCCAT-GGCCATGCTAGAGAGCACTCCCTGCAGAAGCCCCATGGCTCAA  999
      |||||| |||||||||||||||||||||||||||||| ||||||||||||
seq2  TCCCATGGGCCATGCTAGAGAGCACTCCCTGCAGAAG-CCCATGGCTCAA  999

seq1  GGGCTGCCAGCATGCCGATGACATCTGCTCAGTG--TGTGCTTGTGGTGG  1047
      ||||||||||||||||||||||||||||||||||   ||||||||||  |
seq2  GGGCTGCCAGCATGCCGATGACATCTGCTCAGTGGTGGTGCTTGTGGGTG  1049

seq1  CGACAGCACAGCCGC-TGCT-CCCAC-TTCAGGAGTTGTGTTCA-CCACT  1093
      ||||||||||||||| |||| ||||| ||||||||||||  ||| |||||
seq2  CGACAGCACAGCCGCTTGCTCCCCACTTTCAGGAGTTGTTGTCACCCACT  1099

seq1  AAGAAC--TGTCCCCACAGGGACTTCAGA  1120
      ||||||  |||||||||||| ||||||||
seq2  AAGAACCTTGTCCCCACAGGAACTTCAGA  1128