BAC Information

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BAC

Clone NameB6Ng01-305L16
Chromosome5 (Build37)
Map Location 134,874,214 - 134,875,346
singlet/doubletsinglet
Overlap geneGtf2ird1
Upstream geneLOC100039731, LOC666038, LOC100039750, Gats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424
Downstream geneLOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln, Wbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305L16.b
ACCGA098946
length1,151
definitionB6Ng01-305L16.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaagtgcatggcattttaccaactgagctaagactttttaagtg
tgtgtgtgtgtgtttgtgtatgtgtttgcatgcatgtgtgtttgtgtgtg
tgtccatcacatgtgtgtgcacgtcagaggacagctttctcaggatttga
gcctctctagccatcacttgggtaccagggattgaactcaggttgctggg
cctagtactgaatgcatctgctcctgcagagccatcaagagcccttgcct
ttttttgtggtgttgtcgtggtcgttttgggtgtgtgaatgttttacact
tatcttgcgtgtgtctgtgtgtaagctggagtgtgaggacagacttcggt
tcactcttccttgttccatgtgtgttccagggacctagtcaggttgggat
ggcagtgaagcaccttttcccaccagaccatctctcctcccctcttttgg
atttttggaggcacgctcttactccctaaccgaggctagcctggaaatct
ctatttaggccaaactacctcagcacatcaaatactggattatatacatg
gctaatttacctaacctactttctttccttctttcccttttctctctttc
aatatgcattacttatttatttatttagagacagggtctcattttttccc
tggctacctttaaactcccagagtagccaaagttgaccctgagcctctga
cctgcctccacttcctgagccgtccattacaggtttgcaccactataccc
acttttgttcagtgctgaggatgggatcggggctttgtgcatgccagtca
agcacttcctgagtcatatccccggctccttcatttgtttttttacacag
atttatcttctatagtccaggctggctttgaatttcatagccatcctcct
gcctctgtctccccagtgctaggattcccaggttttcactaccgccctgg
gccttcctgcttttttgcctgatttatgtgctctagtgacagtcttttta
acttcgggggaggtaactgtgtagatgaccaaagctgagttttgtaaact
gttagtatttaggagttgttctaggacgaacaccccacctcagtaaatct
ggaacacaagtgatggctatgaggttccccgtactgggagatgggatgcc
c
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_134874214_134875346
seq2: B6Ng01-305L16.b_70_1196 (reverse)

seq1  GGGCAT-CCATCCTCCAGTACGGGGAACCTCATACCCATCACTTTGTGTC  49
      |||||| |||||  |||||||||||||||||||| ||||||| |||||| 
seq2  GGGCATCCCATCTCCCAGTACGGGGAACCTCATAGCCATCAC-TTGTGT-  48

seq1  TCAAGATTTACTGA-GTGTGGTGTTCTGTCCCTAGAACAAACTCCTAAAT  98
      || ||||||||||| ||| ||||||| || |||||||| |||||||||||
seq2  TCCAGATTTACTGAGGTGGGGTGTTC-GT-CCTAGAAC-AACTCCTAAAT  95

seq1  ACTAAACAGTTTACAAAACTCAGCTTTTGGGTCATCTACACAGTTTACCT  148
      ||| |||||||||||||||||||||||  |||||||||||||| ||||||
seq2  ACT-AACAGTTTACAAAACTCAGCTTT--GGTCATCTACACAG-TTACCT  141

seq1  -CCCCGAAGTTTAAAAGACCTGTCACTTAGAGCACATTAAATCAGGCAAA  197
       |||||||||| |||||| ||||||| ||||||||| |||||||||||||
seq2  CCCCCGAAGTTAAAAAGA-CTGTCAC-TAGAGCACA-TAAATCAGGCAAA  188

seq1  AAAGCAGGAA-GCCCA-GGCGGTAGTGAAAACCTGGGAATCCTAGCACTG  245
      |||||||||| ||||| |||||||||||||||||||||||||||||||||
seq2  AAAGCAGGAAGGCCCAGGGCGGTAGTGAAAACCTGGGAATCCTAGCACTG  238

seq1  GGGAGACAGAGGCAGGAGGATGGCTATG-AATTCAAAGCCAGCCTGGACT  294
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGGAGACAGAGGCAGGAGGATGGCTATGAAATTCAAAGCCAGCCTGGACT  288

seq1  ATAGAAGATAAATCTGTGTAAAAAAACAAATGAAGGAGCCGGGGATATGA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGATAAATCTGTGTAAAAAAACAAATGAAGGAGCCGGGGATATGA  338

seq1  CTCAGGAAGTGCTTGACTGGCATGCACAAAGCCCCGATCCCATCCTCAGC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAAGTGCTTGACTGGCATGCACAAAGCCCCGATCCCATCCTCAGC  388

seq1  ACTGAACAAAAGTGGGTATAGTGGTGCAAACCTGTAATGGACGGCTCAGG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACAAAAGTGGGTATAGTGGTGCAAACCTGTAATGGACGGCTCAGG  438

seq1  AAGTGGAGGCAGGTCAGAGGCTCAGGGTCAACTTTGGCTACTCTGGGAGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGAGGCAGGTCAGAGGCTCAGGGTCAACTTTGGCTACTCTGGGAGT  488

seq1  TTAAAGGTAGCCAGGGAAAAAATGAGACCCTGTCTCTAAATAAATAAATA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGTAGCCAGGGAAAAAATGAGACCCTGTCTCTAAATAAATAAATA  538

seq1  AGTAATGCATATTGAAAGAGAGAAAAGGGAAAGAAGGAAAGAAAGTAGGT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGCATATTGAAAGAGAGAAAAGGGAAAGAAGGAAAGAAAGTAGGT  588

seq1  TAGGTAAATTAGCCATGTATATAATCCAGTATTTGATGTGCTGAGGTAGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAAATTAGCCATGTATATAATCCAGTATTTGATGTGCTGAGGTAGT  638

seq1  TTGGCCTAAATAGAGATTTCCAGGCTAGCCTCGGTTAGGGAGTAAGAGCG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTAAATAGAGATTTCCAGGCTAGCCTCGGTTAGGGAGTAAGAGCG  688

seq1  TGCCTCCAAAAATCCAAAAGAGGGGAGGAGAGATGGTCTGGTGGGAAAAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCAAAAATCCAAAAGAGGGGAGGAGAGATGGTCTGGTGGGAAAAG  738

seq1  GTGCTTCACTGCCATCCCAACCTGACTAGGTCCCTGGAACACACATGGAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCACTGCCATCCCAACCTGACTAGGTCCCTGGAACACACATGGAA  788

seq1  CAAGGAAGAGTGAACCGAAGTCTGTCCTCACACTCCAGCTTACACACAGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAGAGTGAACCGAAGTCTGTCCTCACACTCCAGCTTACACACAGA  838

seq1  CACACGCAAGATAAGTGTAAAACATTCACACACCCAAAACGACCACGACA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGCAAGATAAGTGTAAAACATTCACACACCCAAAACGACCACGACA  888

seq1  ACACCACAAAAAAAGGCAAGGGCTCTTGATGGCTCTGCAGGAGCAGATGC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCACAAAAAAAGGCAAGGGCTCTTGATGGCTCTGCAGGAGCAGATGC  938

seq1  ATTCAGTACTAGGCCCAGCAACCTGAGTTCAATCCCTGGTACCCAAGTGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTACTAGGCCCAGCAACCTGAGTTCAATCCCTGGTACCCAAGTGA  988

seq1  TGGCTAGAGAGGCTCAAATCCTGAGAAAGCTGTCCTCTGACGTGCACACA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAGAGAGGCTCAAATCCTGAGAAAGCTGTCCTCTGACGTGCACACA  1038

seq1  CATGTGATGGACACACACACAAACACACATGCATGCAAACACATACACAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGATGGACACACACACAAACACACATGCATGCAAACACATACACAA  1088

seq1  ACACACACACACACACTTAAAAAGTCTTAGCTCAGTTGG  1133
      |||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACTTAAAAAGTCTTAGCTCAGTTGG  1127