BAC Information

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BAC

Clone NameB6Ng01-306C23
Chromosome5 (Build37)
Map Location 85,742,915 - 85,868,088
singlet/doubletdoublet
Overlap genenone
Upstream geneEpha5
Downstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306C23.bB6Ng01-306C23.g
ACCGA099288GA099289
length1,0981,067
definitionB6Ng01-306C23.b B6Ng01-306C23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,866,988 - 85,868,088)(85,742,915 - 85,743,991)
sequence
gaattctttgtacatatcatctgaagactttaagaaacaaagccattttt
ataatatacatgcattttactcacacaatcatctagtgtatccactctac
cctccatctctctgtccaccacacatctcacctagtcaattttctcttac
ccatttctgtttccaaatcttctctgctgaatactggacttcttagaatt
ctttatcatttagtgacattatcttttataagaattggcaaatattttaa
accctgctacagattttgcctttaaagttgcttagcttctaaaaaaaagt
attataatatggaaacattcagactctgagaacaaaggaatttatgcagc
attctatgtttcttcttgtcagcatggtgggattccaatacatagtttag
tttctgtaggtattacatgagaatatctaaggaaaattggttgaggaagt
catgtctaacaaaatgttatagatatatttagtttatacccagtagaagg
cctttctaacttgttatatcttcttcattttctttcttcaatgacttgaa
gttcttgccatacaggtctttatttcaaattgaagtagtgtggattatca
ggcatacagttagaaagtggcacgtaagaagagctttatggaccagttat
gaacggctgcacctggccacgagttatgatataactccttccaattttat
ctctctatatttgaatcttatactttttttttagttaggcataaagattt
gttgagtttgattttattttcaaaatactctttaaaaaaaagtcaacctt
tttattggatgtctgccttcaattgcctgtgagtctgttattatctttta
ttgcttttatatttgggccatttttgatttctttgagtatagcattatat
tatttgatgtctatataattgatatcttccattattctcactgttgacat
agctgtgtctcaattttcttttttgtttttaatttaatgtgcttatcttc
tgtgattgtccatggagcatcctggcttattatggtatgcagttttccat
aattattttatataggaattccagctatatgactggtgttagaacata
gaattccactcaccaatgatgccaagatcctgggtgtgctagggcccact
gagtttgtgcccaagatggtgcggggctggtgctaaccataaggaacccc
caactgctggttgggtgggtttcctttgttcctgttcctgctggcacaag
accctccaggaatttttggaacagatgttgtgttctgctcaccagtgatc
tcaagatcctgagtttgctagggtgcctgcagtgtggagagtcctctggg
gaccttgggattctctgccgattttgtgcccaatatggctcatgaggatt
atcatgttttaaatcccagtagtcatcttcatatatacaactcaataatt
tttcattaagaagaccggctttcaataacttgaaaagaagccctatatat
ttcagaattcaaattcaactcaaccagcagttacctgattctctcaatca
gacctttggagcagtacttatcacagagaccctgagttattttgagaata
gctacacagtataagtaaaatgaaggcaggtattttgctccaaatctgga
tcaagaagaatgtgatgtcaaacagaatggaaagaaaacctatgaacctt
cctgaagtagtcagattaaagagtgggtaggaaagtaagttggtagagaa
aatgtaattgagaatcattgagcctgagaaagaaatagcaatgtatacac
tagataccttggtcattctcagttccctgtatctgggttccattgtggaa
cttggttatataagttagctataaaattttataataaatattatatttac
tatcaaaacattgtaagatatatttccttttttttagtaaaaggtaccat
aaactctccatttgtttgttcagaaacctgaaaaaagacctaacttcctc
cattatccatctacaactaagtttcctgaactatagagatcagaaattat
ttatccacatctgctctttataatatatatatatatccaattttatctcc
atgtttatagagcattttcaccaatgaaatattggatactacattcctgc
taggattctcagtgatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_85866988_85868088
seq2: B6Ng01-306C23.b_47_1144 (reverse)

seq1  TATGTTCTAACAACAGTCATATAGCTGGAA-TACTATAATAAAATAAATA  49
      |||||||||||| ||||||||||||||||| | |||| ||||||||| ||
seq2  TATGTTCTAACACCAGTCATATAGCTGGAATTCCTAT-ATAAAATAATTA  49

seq1  TAGAAAACTTGCATAACATAAAATAAAAACAGGATGCT-CATGGACAATC  98
      | |||||| |||||| |||||    ||  ||||||||| |||||||||||
seq2  TGGAAAAC-TGCATACCATAA---TAAGCCAGGATGCTCCATGGACAATC  95

seq1  ACAGAAGAT-AGCACATTAAAATTAAAAACAAAAAAGAAAATTGAGACAC  147
      ||||||||| |||||||| |||||||||||||||||||||||||||||||
seq2  ACAGAAGATAAGCACATT-AAATTAAAAACAAAAAAGAAAATTGAGACAC  144

seq1  AGCTATGTCAACAGTGAGAATAATGGAAGATATCAATTATATAGACATCA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATGTCAACAGTGAGAATAATGGAAGATATCAATTATATAGACATCA  194

seq1  AATAATATAATGCTATACTCAAAGAAATCAAAAATGGCCCAAATATAAAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATATAATGCTATACTCAAAGAAATCAAAAATGGCCCAAATATAAAA  244

seq1  GCAATAAAAGATAATAACAGACTCACAGGCAATTGAAGGCAGACATCCAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAAAAGATAATAACAGACTCACAGGCAATTGAAGGCAGACATCCAA  294

seq1  TAAAAAGGTTGACTTTTTTTTAAAGAGTATTTTGAAAATAAAATCAAACT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGGTTGACTTTTTTTTAAAGAGTATTTTGAAAATAAAATCAAACT  344

seq1  CAACAAATCTTTATGCCTAACTAAAAAAAAAGTATAAGATTCAAATATAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAATCTTTATGCCTAACTAAAAAAAAAGTATAAGATTCAAATATAG  394

seq1  AGAGATAAAATTGGAAGGAGTTATATCATAACTCGTGGCCAGGTGCAGCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAAAATTGGAAGGAGTTATATCATAACTCGTGGCCAGGTGCAGCC  444

seq1  GTTCATAACTGGTCCATAAAGCTCTTCTTACGTGCCACTTTCTAACTGTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATAACTGGTCCATAAAGCTCTTCTTACGTGCCACTTTCTAACTGTA  494

seq1  TGCCTGATAATCCACACTACTTCAATTTGAAATAAAGACCTGTATGGCAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGATAATCCACACTACTTCAATTTGAAATAAAGACCTGTATGGCAA  544

seq1  GAACTTCAAGTCATTGAAGAAAGAAAATGAAGAAGATATAACAAGTTAGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTCAAGTCATTGAAGAAAGAAAATGAAGAAGATATAACAAGTTAGA  594

seq1  AAGGCCTTCTACTGGGTATAAACTAAATATATCTATAACATTTTGTTAGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCTTCTACTGGGTATAAACTAAATATATCTATAACATTTTGTTAGA  644

seq1  CATGACTTCCTCAACCAATTTTCCTTAGATATTCTCATGTAATACCTACA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACTTCCTCAACCAATTTTCCTTAGATATTCTCATGTAATACCTACA  694

seq1  GAAACTAAACTATGTATTGGAATCCCACCATGCTGACAAGAAGAAACATA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTAAACTATGTATTGGAATCCCACCATGCTGACAAGAAGAAACATA  744

seq1  GAATGCTGCATAAATTCCTTTGTTCTCAGAGTCTGAATGTTTCCATATTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTGCATAAATTCCTTTGTTCTCAGAGTCTGAATGTTTCCATATTA  794

seq1  TAATACTTTTTTTTAGAAGCTAAGCAACTTTAAAGGCAAAATCTGTAGCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTTTTTTTTAGAAGCTAAGCAACTTTAAAGGCAAAATCTGTAGCA  844

seq1  GGGTTTAAAATATTTGCCAATTCTTATAAAAGATAATGTCACTAAATGAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTAAAATATTTGCCAATTCTTATAAAAGATAATGTCACTAAATGAT  894

seq1  AAAGAATTCTAAGAAGTCCAGTATTCAGCAGAGAAGATTTGGAAACAGAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATTCTAAGAAGTCCAGTATTCAGCAGAGAAGATTTGGAAACAGAA  944

seq1  ATGGGTAAGAGAAAATTGACTAGGTGAGATGTGTGGTGGACAGAGAGATG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTAAGAGAAAATTGACTAGGTGAGATGTGTGGTGGACAGAGAGATG  994

seq1  GAGGGTAGAGTGGATACACTAGATGATTGTGTGAGTAAAATGCATGTATA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTAGAGTGGATACACTAGATGATTGTGTGAGTAAAATGCATGTATA  1044

seq1  TTATAAAAATGGCTTTGTTTCTTAAAGTCTTCAGATGATATGTACAAAGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAAATGGCTTTGTTTCTTAAAGTCTTCAGATGATATGTACAAAGA  1094

seq1  ATTC  1101
      ||||
seq2  ATTC  1098

seq1: chr5_85742915_85743991
seq2: B6Ng01-306C23.g_63_1129

seq1  GAATTCCACTCACCAATGATGCCAAGATCCTGGGTGTGCTAGGGCCCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTCACCAATGATGCCAAGATCCTGGGTGTGCTAGGGCCCACT  50

seq1  GAGTTTGTGCCCAAGATGGTGCGGGGCTGGTGCTAACCATAAGGAACCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGTGCCCAAGATGGTGCGGGGCTGGTGCTAACCATAAGGAACCCC  100

seq1  CAACTGCTGGTTGGGTGGGTTTCCTTTGTTCCTGTTCCTGCTGGCACAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCTGGTTGGGTGGGTTTCCTTTGTTCCTGTTCCTGCTGGCACAAG  150

seq1  ACCCTCCAGGAATTTTTGGAACAGATGTTGTGTTCTGCTCACCAGTGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCAGGAATTTTTGGAACAGATGTTGTGTTCTGCTCACCAGTGATC  200

seq1  TCAAGATCCTGAGTTTGCTAGGGTGCCTGCAGTGTGGAGAGTCCTCTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGATCCTGAGTTTGCTAGGGTGCCTGCAGTGTGGAGAGTCCTCTGGG  250

seq1  GACCTTGGGATTCTCTGCCGATTTTGTGCCCAATATGGCTCATGAGGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGGGATTCTCTGCCGATTTTGTGCCCAATATGGCTCATGAGGATT  300

seq1  ATCATGTTTTAAATCCCAGTAGTCATCTTCATATATACAACTCAATAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTTTTAAATCCCAGTAGTCATCTTCATATATACAACTCAATAATT  350

seq1  TTTCATTAAGAAGACCGGCTTTCAATAACTTGAAAAGAAGCCCTATATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTAAGAAGACCGGCTTTCAATAACTTGAAAAGAAGCCCTATATAT  400

seq1  TTCAGAATTCAAATTCAACTCAACCAGCAGTTACCTGATTCTCTCAATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAATTCAAATTCAACTCAACCAGCAGTTACCTGATTCTCTCAATCA  450

seq1  GACCTTTGGAGCAGTACTTATCACAGAGACCCTGAGTTATTTTGAGAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTTGGAGCAGTACTTATCACAGAGACCCTGAGTTATTTTGAGAATA  500

seq1  GCTACACAGTATAAGTAAAATGAAGGCAGGTATTTTGCTCCAAATCTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACACAGTATAAGTAAAATGAAGGCAGGTATTTTGCTCCAAATCTGGA  550

seq1  TCAAGAAGAATGTGATGTCAAACAGAATGGAAAGAAAACCTATGAACCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAGAATGTGATGTCAAACAGAATGGAAAGAAAACCTATGAACCTT  600

seq1  CCTGAAGTAGTCAGATTAAAGAGTGGGTAGGAAAGTAAGTTGGTAGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGTAGTCAGATTAAAGAGTGGGTAGGAAAGTAAGTTGGTAGAGAA  650

seq1  AATGTAATTGAGAATCATTGAGCCTGAGAAAGAAATAGCAATGTATACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAATTGAGAATCATTGAGCCTGAGAAAGAAATAGCAATGTATACAC  700

seq1  TAGATACCTTGGTCATTCTCAGTTCCCTGTATCTGGGTTCCATTGTGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATACCTTGGTCATTCTCAGTTCCCTGTATCTGGGTTCCATTGTGGAA  750

seq1  CTTGGTTATATAAGTTAGCTATAAAATTTTATAATAAATATTATATTTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTATATAAGTTAGCTATAAAATTTTATAATAAATATTATATTTAC  800

seq1  TATCAAAACATTGTAAGATATATTTCC-TTTTTTTAGTAAAAGGTACCAT  849
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TATCAAAACATTGTAAGATATATTTCCTTTTTTTTAGTAAAAGGTACCAT  850

seq1  AAACTCTCCATTTGTTTGTTCAGAAACCTG-AAAAAGACCTAACTTCCTC  898
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAACTCTCCATTTGTTTGTTCAGAAACCTGAAAAAAGACCTAACTTCCTC  900

seq1  CATTATCCATCTACAACTAAG-TTCCTGAACTAATAGAGATCAGAAATTA  947
      ||||||||||||||||||||| |||||||||| |||||||||||||||||
seq2  CATTATCCATCTACAACTAAGTTTCCTGAACT-ATAGAGATCAGAAATTA  949

seq1  TTTATTCCACATCTGCTTCTTTAT-ATATATATATATATCCCAAATTTTA  996
      |||| ||||||||||| ||||||| ||||||||||||||||  |||||||
seq2  TTTA-TCCACATCTGC-TCTTTATAATATATATATATATCC--AATTTTA  995

seq1  TCCTCCATGTTTATTAGGAGCATTTTCACCAATGAAATAATTTGATACCT  1046
      | ||||||||||||   ||||||||||||||||||||| ||| |||| ||
seq2  T-CTCCATGTTTAT--AGAGCATTTTCACCAATGAAAT-ATTGGATA-CT  1040

seq1  ACATTCCCTTGCTAAGGATTCTTCAGTGATC  1077
      |||||||  |||| ||||||| |||||||||
seq2  ACATTCC--TGCT-AGGATTC-TCAGTGATC  1067