BAC Information

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BAC

Clone NameB6Ng01-306O10
Chromosome5 (Build37)
Map Location 128,344,239 - 128,345,322
singlet/doubletsinglet
Overlap geneTmem132d
Upstream geneLOC100040327, Tmem132c, Slc15a4, Glt1d1
Downstream geneFzd10, LOC100040398, Piwil1, Rimbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306O10.bB6Ng01-306O10.g
ACCGA099814GA099815
length1,1911,088
definitionB6Ng01-306O10.b B6Ng01-306O10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcccccacctgatagtcaatcaactgatgtgccaaaaaacggg
tcatcgggccctcggtcccagggccctcaaagatatgggaaccggtttgt
caggacccaggaagcagtcagagaggcgacccaggaagacccacaagggt
ggacctgcgtgccgcctccgacttcctactaatgcctcaaatgagtattc
agccggtgccggtggagcctataccatccttgcccccgggaaccatgggc
cttattctcggccgaggttcactcaccttgcagggcttagtagtccaccc
tggagttatggattgtcaacattcccctgaaatacaggtcctgtgctcaa
gccctaagggcgttttttctattagtaaaggagataggatagctcagctg
ctgctcctccctgataataccagggagaaatctgcaggacctgagataaa
gaaaatgggctcctcaggaaatgattctgcctatttggttgtatctttaa
atgatagacctaagctccgccttaagattaatggaaaagagtttgaaggc
atccttgataccggagcagataaaagtataatttctacacattggtggcc
caaagcatggcccaccacagagtcatctcattcattacagggcctaggat
atcaatcatgtcccactataagctccgttgccttgacgtgggaatcctct
gaagggcagcaagggaaattcataccttatgtgctcccactcccggttaa
cctctggggaagggatattatgcagcatctgggccttattttgtccaatg
aaaacgccccatcaggagggtattcagctaaagcaaaaaatatcatggca
aagatgggttataaagaaagaaaagggttagacatcaagaacagggaaag
gatagagccatctcacctaatggaaaccaagacagacaagggtctgggtt
ttccttagcggccattggggccagcacgaacccataccatggaaaacagg
ggaccctagtggtgggtttcctcaatggcactatcctctgaaaactagaa
gcctgtgattcactgttagagaccattaaactaagccaatattggaccct
ctacctcacactggaatctcattttgtaattagaaagtcagaagttgaaa
ctgctcatgtaaccctcagaagccatttaaagtgaaagcca
gaattcactccatcactgcccccattacatcctccctacaaaatccaggt
gttgacagaaatggcctcttggcagctggctgttatcaacatttggcttc
ctgtgaccaggtgaaagaccaggccttttgcgagggaggcaggaagagac
atcctcacgttcaggtgacaggtgacttggggattagctaatggacatat
gtttgttcttccaggaggcagagatcctgaacacagccatcctcactgga
aagacggtggctgtccctgtgaaggtgatctctgtggaggaagatggcac
agtacaaggtcttttggactcagtggagtgcaggtcatctgacgaagacg
tggttaaggcaagtggatggttcctcgcccattaggaagcccatagttac
acgggcatgggtgtttatccccagctgagatctgtggggtctgcagggtt
cctcccattctggttttcttgcaatttaaatcaggagtgtctcccacccc
aacgccaaataggatatacactgctataacccatgcctgggctgtgagac
atttcttctgtgcctaagtcaccaacatggtccccccccctagaccctgg
gagttggcagagggatatggggaccatatacaccctcccaagcctagact
gaaaaacagaggtttctttccacccacttgggctgtgaaggtatagaaag
gagagtcaggacctggactggtacacaggcagccatgcttcgtgatgtat
tcacagccaaatagcttgtgtgaaatcgataaaggcataaagtttatgat
tacaaccaactttgatttacaaaaccagccagcggagagaggagttgact
cccaacccctgggccctcccacacgattgcacaagagcgagggacatcac
acactatgccccatccctttgttccggttcctgcctccatttttcctcca
accttcttctttctcttttttaaaatgaagcaaaaatgatcccaggcaag
tgtaaataaaaaaaaaaatccatgcttggagaagtcttgaggccaaggac
ctctccgagtctggctgtggccaggaaatctctcagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_128344239_128345322
seq2: B6Ng01-306O10.g_68_1155 (reverse)

seq1  TGCTGAGAGA-TTCCTGG-CACAGCCAGACT-GGA---GTCCTTGCCCTC  44
      |||||||||| ||||||| |||||||||||| |||   ||||||| ||||
seq2  TGCTGAGAGATTTCCTGGCCACAGCCAGACTCGGAGAGGTCCTTGGCCTC  50

seq1  -AGGCTTCTCCCAGCATGCTTTTTTTTTTTTTTTTTTTTTTTTGCCTTGG  93
       || ||||||| ||||||    ||||||||||| |||    |||||| ||
seq2  AAGACTTCTCCAAGCATG--GATTTTTTTTTTTATTTACACTTGCCTGGG  98

seq1  ATCATTTTTGCTTTCAATTTTAAAAAAGAGAAAGAAGAGGTTGGGAGGAA  143
      |||||||||||||   |||||||||||||||||||||| | | |||||||
seq2  ATCATTTTTGCTT--CATTTTAAAAAAGAGAAAGAAGAAGGTTGGAGGAA  146

seq1  AAATGGAGGCAGGGAACGGAACAAAGGGATGGGGCATAGTGTGTGATGTC  193
      ||||||||||||| | ||||||||||||||||||||||||||||||||||
seq2  AAATGGAGGCAGGAACCGGAACAAAGGGATGGGGCATAGTGTGTGATGTC  196

seq1  CCTCGCTCTTGTGCAATCGTGTGGGAGGG-CCAGGGGTTGGGAGTCAACT  242
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCTCGCTCTTGTGCAATCGTGTGGGAGGGCCCAGGGGTTGGGAGTCAACT  246

seq1  CCTCTCTCCGCTGGCTGGTTTTGTAAATCAAAGTTGGTTGTAATCATAAA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTCCGCTGGCTGGTTTTGTAAATCAAAGTTGGTTGTAATCATAAA  296

seq1  CTTTATGCCTTTATCGATTTCACACAAGCTATTTGGCTGTGAATACATCA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGCCTTTATCGATTTCACACAAGCTATTTGGCTGTGAATACATCA  346

seq1  CGAAGCATGGCTGCCTGTGTACCAGTCCAGGTCCTGACTCTCCTTTCTAT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGCATGGCTGCCTGTGTACCAGTCCAGGTCCTGACTCTCCTTTCTAT  396

seq1  ACCTTCACAGCCCAAGTGGGTGGAAAGAAACCTCTGTTTTTCAGTCTAGG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCACAGCCCAAGTGGGTGGAAAGAAACCTCTGTTTTTCAGTCTAGG  446

seq1  CTTGGGAGGGTGTATATGGTCCCCATATCCCTCTGCCAACTCCCAGGGTC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAGGGTGTATATGGTCCCCATATCCCTCTGCCAACTCCCAGGGTC  496

seq1  TAGGGGGGGGGACCATGTTGGTGACTTAGGCACAGAAGAAATGTCTCACA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGGGGGGACCATGTTGGTGACTTAGGCACAGAAGAAATGTCTCACA  546

seq1  GCCCAGGCATGGGTTATAGCAGTGTATATCCTATTTGGCGTTGGGGTGGG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGCATGGGTTATAGCAGTGTATATCCTATTTGGCGTTGGGGTGGG  596

seq1  AGACACTCCTGATTTAAATTGCAAGAAAACCAGAATGGGAGGAACCCTGC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTCCTGATTTAAATTGCAAGAAAACCAGAATGGGAGGAACCCTGC  646

seq1  AGACCCCACAGATCTCAGCTGGGGATAAACACCCATGCCCGTGTAACTAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCCACAGATCTCAGCTGGGGATAAACACCCATGCCCGTGTAACTAT  696

seq1  GGGCTTCCTAATGGGCGAGGAACCATCCACTTGCCTTAACCACGTCTTCG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTCCTAATGGGCGAGGAACCATCCACTTGCCTTAACCACGTCTTCG  746

seq1  TCAGATGACCTGCACTCCACTGAGTCCAAAAGACCTTGTACTGTGCCATC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGACCTGCACTCCACTGAGTCCAAAAGACCTTGTACTGTGCCATC  796

seq1  TTCCTCCACAGAGATCACCTTCACAGGGACAGCCACCGTCTTTCCAGTGA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCACAGAGATCACCTTCACAGGGACAGCCACCGTCTTTCCAGTGA  846

seq1  GGATGGCTGTGTTCAGGATCTCTGCCTCCTGGAAGAACAAACATATGTCC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGCTGTGTTCAGGATCTCTGCCTCCTGGAAGAACAAACATATGTCC  896

seq1  ATTAGCTAATCCCCAAGTCACCTGTCACCTGAACGTGAGGATGTCTCTTC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCTAATCCCCAAGTCACCTGTCACCTGAACGTGAGGATGTCTCTTC  946

seq1  CTGCCTCCCTCGCAAAAGGCCTGGTCTTTCACCTGGTCACAGGAAGCCAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCCTCGCAAAAGGCCTGGTCTTTCACCTGGTCACAGGAAGCCAA  996

seq1  ATGTTGATAACAGCCAGCTGCCAAGAGGCCATTTCTGTCAACACCTGGAT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGATAACAGCCAGCTGCCAAGAGGCCATTTCTGTCAACACCTGGAT  1046

seq1  TTTGTAGGGAGGATGTAATGGGGGCAGTGATGGAGTGAATTC  1084
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGGGAGGATGTAATGGGGGCAGTGATGGAGTGAATTC  1088