BAC Information

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BAC

Clone NameB6Ng01-307J11
Chromosome5 (Build37)
Map Location 84,923,496 - 84,928,576
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039608, LOC231368, Epha5, LOC100039489
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307J11.bB6Ng01-307J11.g
ACCGA100323GA100324
length1,179595
definitionB6Ng01-307J11.b B6Ng01-307J11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ctcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagagagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactatggaaatcagtctggcggttcctca
gaaaactggatatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaggaacccatat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taagatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtgaacactatgcccctccttagaagtgggaa
caaaacaagcttggaaggagttacagagacaaagtttggagctgagataa
aaggatggaccatgtagacactagcatatccagggatccatcccataatc
agcttccaaatgctgacaccattgcatacactagcaagattatgctgaaa
aggaccctgatatagctgtctcttgtcagagtatgcctgggcctagcaaa
catagaagtgggatgctcacagtcggctattggatgggatcacatgggcc
ccaatgaaagagctagagaaagtaccaaagaagctaaagggatctgcaac
cctatagtgaacacattaatgaactaacagtaccccggagctctgactct
agctgcatatgcatcaaagatggctagtcgcatcactggaaaggagaagt
ccaatgacacgcaactttatatgccaagtacaggaacgtcagtccataaa
tggctaagtgggtggcctaaggaaaacta
gaattctaagtgttctgctggtaaagaaattgtcataaaaatatggttag
cataggtatacattagttttaacttatatgctccatttcctagtgttcca
tgatgtctatatattttggctacagagaaatactcacactaggtagaaaa
gagatcttactaagttgtcactctaatttcaattgtgtgcaataatgtgt
ggatatatttgaactgtgtgtgtatatatatatatatatatatatatata
tatatatatatatatatatacacacacacagcacacacacacacacacac
acacacacaaaatatgtgagagagtatatatatatctctctttgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgacacatatatacacagagagagacagag
agagagagagtatgtgtgtatgtgtgtgtgtgtgtgtgcgctctctctct
ctatctctctctctatctctcaaacacacacacacacacacacacatata
tatatatatacacatatatatgggcgggcgggcgggcgggcggcataccc
acatgtgtgagagagagaaacaaagacatatatatatatacatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_84923496_84928576
seq2: B6Ng01-307J11.g_65_659

seq1  GAATTCTAAGTGTTCTGCTGGTAAAGAAATTGTCATAAAAATATGGTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGTGTTCTGCTGGTAAAGAAATTGTCATAAAAATATGGTTAG  50

seq1  CATAGGTATACATTAGTTTTAACTTATATGCTCCATTTCCTAGTGTTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGTATACATTAGTTTTAACTTATATGCTCCATTTCCTAGTGTTCCA  100

seq1  TGATGTCTATATATTTTGGCTACAGAGAAATACTCACACTAGGTAGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCTATATATTTTGGCTACAGAGAAATACTCACACTAGGTAGAAAA  150

seq1  GAGATCTTACTAAGTTGTCACTCTAATTTCAATTGTGTGCAATAATGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTTACTAAGTTGTCACTCTAATTTCAATTGTGTGCAATAATGTGT  200

seq1  GGATATATTTGAACTGTGTGTGTATATATATATATATATATATATATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATATTTGAACTGTGTGTGTATATATATATATATATATATATATATA  250

seq1  TATATATATATATATATATATGTTTGTATTACTTTAGACAATGAAATATA  300
      ||||||||||||||||||||          ||     |||   | | | |
seq2  TATATATATATATATATATA-----CACACACACAGCACACACACACACA  295

seq1  CTTGTCATATATGACAATAAATGGATGTTTATCATTCATTTATTATAT-A  349
      |    || | |  |||  ||||  ||||     | | || || |||||  
seq2  C---ACACACA-CACACAAAAT--ATGTGAGAGAGT-ATATA-TATATCT  337

seq1  AAATTTGAG-GTGTCAACAAAGAAGGTAATGGTTCTGTTTAGGCCTTACA  398
         |||| | ||||           ||  ||  | ||| |  |  | |||
seq2  CTCTTTGTGTGTGT-----------GT-GTGTGTGTGTGTGTGTGTGACA  375

seq1  GTCAGAAACTATAATAATCTTTCATTTATCATCATTATTTTAAGGAAGGC  448
                            ||| |||   ||        ||  || |
seq2  ----------------------CATATATACACA-------GAGAGAGAC  396

seq1  AGTTTAAACCAATATACTTTTTTTTTATGTAACACGAGAAGTACTATATA  498
      ||   | |   | | | | | | | |||||          ||        
seq2  AG---AGAGAGAGAGAGTATGTGTGTATGT----------GT--------  425

seq1  AAATACATCTTCAATTTATTAGGATGCGATATATGTCATTTTGTTGTGTT  548
                    | | |  |  |||| | | | ||  | |        
seq2  -------------GTGTGTGTGTGTGCGCTCTCTCTCTCTAT--------  454

seq1  GACTAAATATCCTTCTTTTAAAC---TATAAACCTATAAGTTGGGTTATA  595
        ||   | ||  ||| | ||||    | | ||  | |        ||||
seq2  --CTCTCTCTCTATCTCTCAAACACACACACACACACACACACATATATA  502

seq1  TTTTTAAAAGCTTTCAT-TATTCTGTTGAGTGAATTTGGTTCAGCCCCCT  644
      | | || |  | |  || |   | |  | | |     |   ||  |||  
seq2  TATATATACACATATATATGGGCGGGCGGGCGGGCGGGCGGCATACCCAC  552

seq1  TTAATTCAAGCCAGCACAACTGAAGCCTTTCCTATCTAAAAATCAAACAA  694
       |  |   ||  || | ||   ||| | |   ||| || | ||       
seq2  AT-GTGTGAGAGAG-AGAAACAAAGACATATATATATATACATAT-----  595

seq1  TTCCTCCTTTTCTCCTAAGACTTATAAAATTGAGCATACGCTTTCTCAAG  744
                                                        
seq2  --------------------------------------------------  595

seq1  CGATACAGCTATTATTTTCTCTTCCTTTTACAGTGGAAGAGACATTTGCT  794
                                                        
seq2  --------------------------------------------------  595

seq1  ACTTCATAGGCTCATAGGGAGAGTTTTAAAGGTTTCATAGAATTTCTGCC  844
                                                        
seq2  --------------------------------------------------  595

seq1  ACTGTAGTATAATTCTTCCTTTCTGAGTAGTAGAAGTGCTATTTCCCAAG  894
                                                        
seq2  --------------------------------------------------  595

seq1  TTAAAAGAGCATTTCTATCTAAGTAGCTTGAGTTGATGCACACAATGTAG  944
                                                        
seq2  --------------------------------------------------  595

seq1  TTTTATGATATTGGGTTCTACTAATTTTGCTTCAGTGATGCCATAATATT  994
                                                        
seq2  --------------------------------------------------  595

seq1  AATCATGTATTATCAAATATTATCATATATTATCAAACATTTTAAAAGGT  1044
                                                        
seq2  --------------------------------------------------  595

seq1  TTGGTATTTCAAAGGAGACCTGCATTAAGGTTGATGGAATCTATTTATAA  1094
                                                        
seq2  --------------------------------------------------  595

seq1  CTCAACTTTTTTTTAGAGGAAGAATTAAATAAAATTCTTTTATGTTTAAT  1144
                                                        
seq2  --------------------------------------------------  595

seq1  TGTATATTTTATTTGTTTACATTTCAAAGGTTATCTCCCTTCCCGGTTTT  1194
                                                        
seq2  --------------------------------------------------  595

seq1  CCCTCTGCAAACCACTATCCCATTCCCTCCTACCCTGCTCTCCCACCCAC  1244
                                                        
seq2  --------------------------------------------------  595

seq1  TCACCCACACCTGCCTTATACCTCTAGCAGTCCCCTACACTGGGGCAGCA  1294
                                                        
seq2  --------------------------------------------------  595

seq1  AGCCTTTAGAGGACCCTCCCATTGATGCCAGATAAGGCCTCTTCAGTTCC  1344
                                                        
seq2  --------------------------------------------------  595

seq1  TTCAGTCCTTCCTCTAACTTCTCCATTGGTATCCCTGTGTCATTGATGTT  1394
                                                        
seq2  --------------------------------------------------  595

seq1  TGGCTGCGAGCATCCACATCTGTATTGGTTAGGATCTGGCAGAGCCTCTC  1444
                                                        
seq2  --------------------------------------------------  595

seq1  AGGAGAAGCTATATCGGACTCTGGTCAGCAAGCACTTCTTAGCATCAGCA  1494
                                                        
seq2  --------------------------------------------------  595

seq1  ATAGTGTCTAGATTTCGTGTCTGCATACTGAATGGATCCCCAAGTGTGTC  1544
                                                        
seq2  --------------------------------------------------  595

seq1  TGCAAAAAATATTTAACAGTTTTGAATGTCTCTGTCTTGTGTATCTTTTA  1594
                                                        
seq2  --------------------------------------------------  595

seq1  CAAGTTTTATGAAAATTTAATTGTAATATATGTTCCACACACCAGTAAAA  1644
                                                        
seq2  --------------------------------------------------  595

seq1  TGTAAATAAATTTAATATTTTCAAGTTTACTAAATACTCACATTTCATGT  1694
                                                        
seq2  --------------------------------------------------  595

seq1  TTTCAGTTATTTAATCACAGTACTGAGATATCTTCAATTCTCAGAAACGT  1744
                                                        
seq2  --------------------------------------------------  595

seq1  TGTGAATATTTGATTATGAATTGAGTTATTTACTACAAATATAATTTAGT  1794
                                                        
seq2  --------------------------------------------------  595

seq1  TTTAATTCTTTAAATCCTTCTGCACTAAGCTGAACTGTCAAGAGATATTT  1844
                                                        
seq2  --------------------------------------------------  595

seq1  TATTAAATTTAGTATCCTTGAAGTTTTATGATTCTATGAGCCTTAAGGCC  1894
                                                        
seq2  --------------------------------------------------  595

seq1  TCTAAAATCATTACTTTTTTTTTTTTTACATATTTTACAAATCACACTGA  1944
                                                        
seq2  --------------------------------------------------  595

seq1  CCCTTTAATAATACATGCAGTTTAAGTGTGCCCCCTCATTATAGTAATAG  1994
                                                        
seq2  --------------------------------------------------  595

seq1  ACTATATCCCACAAAGAATCATCTTTGAGATAAATGTTCTGCCTTCTTTA  2044
                                                        
seq2  --------------------------------------------------  595

seq1  TGAAAATCAGGTTGCTAATGAAACAACACATTCCATCTCTTTTCCTGGTA  2094
                                                        
seq2  --------------------------------------------------  595

seq1  ACATCATTCATTCTGAAGTAACTGTACAAAAAATATTTATAATATTTATA  2144
                                                        
seq2  --------------------------------------------------  595

seq1  CAGGCTTTGGCAATAGGAAAAATTATTACTATGATAAATATAATTGTGTT  2194
                                                        
seq2  --------------------------------------------------  595

seq1  GGAAATTATGAGATATAAAAAGATATTTCTAACAAAGTATTTTTTAAATC  2244
                                                        
seq2  --------------------------------------------------  595

seq1  AAGTCAGTGCAGAAATCCAGGTCCTGATGCATGATCTGCATCTCTATCTC  2294
                                                        
seq2  --------------------------------------------------  595

seq1  CTAAAAATTATTACTAATTAAAGGGATGTAGATAGTTATTAACCAACTAT  2344
                                                        
seq2  --------------------------------------------------  595

seq1  ACACTCGAAATTCAAAGAACAGAATGAAGAGTGTATATATTTGTAAGGAA  2394
                                                        
seq2  --------------------------------------------------  595

seq1  TCAACTTTAAGAAAGCTTTGTATAAATATAAACAAATAAAAATTCAGAAA  2444
                                                        
seq2  --------------------------------------------------  595

seq1  GATTTAGAAAACTCACAATGAATACTTTATTTGATGGGAATTTATACTTC  2494
                                                        
seq2  --------------------------------------------------  595

seq1  AGCCATTGAGAAATGATAAAAGTTTAGCTGAAGAAAGATTTGTCCCCCTT  2544
                                                        
seq2  --------------------------------------------------  595

seq1  GTTCCTGGCTTGGATATTTTACCTCTTAAAACTCTTCTATGGGGACTTAG  2594
                                                        
seq2  --------------------------------------------------  595

seq1  TAGGGAAGGTCACTCCAGAGGAAGTTTAATCTAGGTTTTCAGAACCATGG  2644
                                                        
seq2  --------------------------------------------------  595

seq1  ACTAGGAAAACTATATATTTTATATTATTTAGATGAATGACAAGAATTCA  2694
                                                        
seq2  --------------------------------------------------  595

seq1  GAAACACTCTCAAATATTCATGAAATAAATAGTTTTGTGAATCACAACAA  2744
                                                        
seq2  --------------------------------------------------  595

seq1  AGATTAATCTTAGATATACTAATAAACCTCAACATGTAAATAAATGAAAG  2794
                                                        
seq2  --------------------------------------------------  595

seq1  AAAAATTCATTGATAATGAAACTAGTCAAATTATTGTTTTTGAAAATGAT  2844
                                                        
seq2  --------------------------------------------------  595

seq1  TTTTGACACAATATTGATAATATTTCCCATTTCCCCAACTCTTCCCATAT  2894
                                                        
seq2  --------------------------------------------------  595

seq1  AATTTTCAGCTATCTACCAACCCTATTTCACATTTTCTCTTTCTTCTCCC  2944
                                                        
seq2  --------------------------------------------------  595

seq1  TCTATTCACATTTGTGTCTCTGTATCTCAAAGAAAGGGAAAGAAAGAGAG  2994
                                                        
seq2  --------------------------------------------------  595

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAGAAAGAAA  3044
                                                        
seq2  --------------------------------------------------  595

seq1  GAAAGAAAGAAAGAGAGAGAGAGAGAGAGAAAGAAAGAAAGAAAGAAAGA  3094
                                                        
seq2  --------------------------------------------------  595

seq1  AAGAAAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGAAAGAAAGAAAGAAA  3144
                                                        
seq2  --------------------------------------------------  595

seq1  GAAAGAAAGGTAGAAAGAAAGCAGACAAAATATATTAATAAAAAGCTCAA  3194
                                                        
seq2  --------------------------------------------------  595

seq1  AAACAACAAAGCAAAACATGAGGTCAATTTTGTGTTGGCTCACTTCTTAC  3244
                                                        
seq2  --------------------------------------------------  595

seq1  TTCTGGGCCTGGGGCCTTCCTTGGAGTGTGGTTGGTATATCCAGTTGCAC  3294
                                                        
seq2  --------------------------------------------------  595

seq1  ACCATCGGAGAAAACCAACTTTGCCTTTCCAAGTAGGTTTCCACTCTAAC  3344
                                                        
seq2  --------------------------------------------------  595

seq1  TCCCTGAGGTGGTCCTGATGATTTCAGTCGAGGAAACAGTACTATCCAGA  3394
                                                        
seq2  --------------------------------------------------  595

seq1  CATAGCAGGACTGATACAAATATGACATCAAATGATATGGCTTTGCTTCT  3444
                                                        
seq2  --------------------------------------------------  595

seq1  GAGCTTTTTCTTTACATTCTGTTTCCATATTGCTTACAATAGTGTATGAT  3494
                                                        
seq2  --------------------------------------------------  595

seq1  TCTTTTGTCAGCATTTATTAAAGTTTGCCTAATTATTTATAACTACATAA  3544
                                                        
seq2  --------------------------------------------------  595

seq1  GAAAGTAGGCAACGTAACGTTAATGTACTTGAAGACTTCTGTTATCTTTG  3594
                                                        
seq2  --------------------------------------------------  595

seq1  AGCACAGATAAAGCTTCCTAAATCTTGGTCCACAAGTTTGCGCCAAACTA  3644
                                                        
seq2  --------------------------------------------------  595

seq1  TCTCTAGGAACTGTAACTTTATTGTGTCCCTAAGGATGGAACTGTGAGAT  3694
                                                        
seq2  --------------------------------------------------  595

seq1  TCATCCATTCATAGAACGAACCACTGGTATCATTACTTGCTCCTTGGAGG  3744
                                                        
seq2  --------------------------------------------------  595

seq1  TATTAGTGAATGACAACCTCATTCTTTACACTTCTTTCTTTTTTTTTTTT  3794
                                                        
seq2  --------------------------------------------------  595

seq1  CTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTC  3844
                                                        
seq2  --------------------------------------------------  595

seq1  TTTTCTTTTCTTTTTTTAGTTAAAAAATAGTTATAGAAAACTATACACAT  3894
                                                        
seq2  --------------------------------------------------  595

seq1  ATACATTTATTATTAATATATTTATACACATATGAAGAAATTCGTTTTTC  3944
                                                        
seq2  --------------------------------------------------  595

seq1  TATGGATTATATATCCTAAGACATCTCTGCCCAGCCATGCTATTAAAAAT  3994
                                                        
seq2  --------------------------------------------------  595

seq1  GATGAGCTTCAGGGTTAGTGAGAAATTTTATCTCAGTTTAATAGTGCAAG  4044
                                                        
seq2  --------------------------------------------------  595

seq1  ACTGGTAGGGCAGGATCCTTGATGCCTACTTCTGGCCTCTTCGTTAAAGC  4094
                                                        
seq2  --------------------------------------------------  595

seq1  ACACACATGAACATACACTCACACATACACCACTCACACACAGGTACACA  4144
                                                        
seq2  --------------------------------------------------  595

seq1  CATACACAAATCAGTATTAAATAAATAAATAAATAAATAAATAAATAAAT  4194
                                                        
seq2  --------------------------------------------------  595

seq1  AAATAAATAGTTTTTATGAATAAATACCATTTGAATACAATGTACCAGGA  4244
                                                        
seq2  --------------------------------------------------  595

seq1  TAATCTACTGGTAATTGTACAATTGTGAGAAGTATAGACTATTGATACAA  4294
                                                        
seq2  --------------------------------------------------  595

seq1  AGAAACCGGCAGAGTACATAAAATGAGTTAACCTAATATCATTTTATGAG  4344
                                                        
seq2  --------------------------------------------------  595

seq1  ATAGTTAACAGATTTTCTTCCTAACTGAGCATGCTTTATGTACACACCGT  4394
                                                        
seq2  --------------------------------------------------  595

seq1  TTTTTCTTTTTCATTTATCTATGAGTAGCGCATAGACACAGTTTCCCATC  4444
                                                        
seq2  --------------------------------------------------  595

seq1  ACCAAGTCCATAGTTGAAGTTCCTGAATCTGAGGGAATTTCAGGGATTAG  4494
                                                        
seq2  --------------------------------------------------  595

seq1  CATATTCTGATTGCAATGTATCAGCTTTACCCTATAAAACCCACCTTCTT  4544
                                                        
seq2  --------------------------------------------------  595

seq1  AGCATTTGAATCTACCATGCAAGATAAGTATGTGCTCACTAATATTACTT  4594
                                                        
seq2  --------------------------------------------------  595

seq1  TTTGTTTACTAGTAGAATTTTGAATTATACGAATAAAACATGTCATCTAT  4644
                                                        
seq2  --------------------------------------------------  595

seq1  ATGCCTGTGCTCCACCTAGTAAACTTTTATTTTTATTTGCAAGTATTTTG  4694
                                                        
seq2  --------------------------------------------------  595

seq1  TATATTTTATTTGGCTTGTTTATTTCATTCTTTTATCTGTCCTTTGGCTT  4744
                                                        
seq2  --------------------------------------------------  595

seq1  GAAATGAACTATTAGAAAGCCAGTAAGTTTAAGAATTTGACCTTGCTCTA  4794
                                                        
seq2  --------------------------------------------------  595

seq1  TAGTTTGTGTTAGTTTCAGTCAATGACATATATACATATGTGTGTATATA  4844
                                                        
seq2  --------------------------------------------------  595

seq1  TATATATATATATATATATATACATATATATATATATATATATATATATA  4894
                                                        
seq2  --------------------------------------------------  595

seq1  TATATACTCACATACATATACATATATATATGTAGAAGCTTTAAAATATA  4944
                                                        
seq2  --------------------------------------------------  595

seq1  TATTGAATCTGTACAACATAGCTTTAAATATATACTGACATATATATATA  4994
                                                        
seq2  --------------------------------------------------  595

seq1  TATATGCTTTTATAAGCTTTAAAAGATAATAGTCCTCCAGAAGTTCAATT  5044
                                                        
seq2  --------------------------------------------------  595

seq1  TATGATATGACTAATATTCAAGATTTGAAGACCATAT  5081
                                           
seq2  -------------------------------------  595