BAC Information

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BAC

Clone NameB6Ng01-310N02
Chromosome5 (Build37)
Map Location 138,570,090 - 138,570,418
singlet/doubletsinglet
Overlap geneZscan21
Upstream geneTrim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1
Downstream geneZfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244, Pdgfa, Prkar1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310N02.bB6Ng01-310N02.g
ACCGA102693GA102694
length1,190971
definitionB6Ng01-310N02.b B6Ng01-310N02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgggatgtgaattcttcatgaattgtgtttacttctacaaaaaa
ttccctttcaaggtctataaagaattgtattagaattttgttaggaattg
cattgaatcttcagattgcttttggtaagatggccatttttactatgtta
atcctactgatctgtgagcatgaaagatctttctatcttctgatatctac
ctcaacttttttcttcagagatttaagtttcttgtcacagaggtatttta
cttgatttgttggagttacaccacacctataaacacttcctttttgacaa
agaataaaaaggtatacaatggaaaaaagaaagcatcttcaacaaatggt
gctggactaactggatacctgcatgtaaaagatatgatatttatgaccca
gcacaaaaattgtccaagtggatcaaagacctccacataaaaccagttag
ggttttactgctgtgaacagacaccatgaccaaggcaagtcttataaaaa
ataacatttaattggagctggcttacagggtcagaggttcagtccattat
tatcaaggtgggagcatgacagtatccaggcaggcatggtgtaggcagag
ctgagagttctatatcttcatccaaaggctgctagtggaagactgactta
ttccaaccaggccacacctccagatggtgccactccctggtccaagaata
tacaaaccaccacaacaagatacattaagtctaatagtgtagagcagcct
taaagtcattgatacaggaaacaatttcctcagcagaacaccaatgtctc
agactctaagataaacaactgataaatggacctcatgaaactgaaaagct
tctgtaagtcataagacatagtcaataggacaaaagaccagccttcattt
tggaaaaggattttaacctaccctgaaagagtcctagtatccaaaattta
taaagaactcagaaattagacactagcaatcccaacaacccaatttaaaa
atggggtacagagctaaacagaacattctcaatagaggaatctcaaatgc
cagatagcactcaggaaatgtcaaaagccttaagtcatagaaatgccaat
caatgaccctgactcaccatacactgtcgaattgctagatgtaaactctg
gaaataaaccaatgcctgactgcaactgggttacaaacac
gaattcagtatactcaataattatttctatttaaaaaaatagaagcttct
tctaccgcacaaatacatacatggaatgtgttggtttcagaaattgagaa
tactcttcggtattttaaaaaatttagtaatagacttaaggtatttgttg
taatgtggattgtgaactagaactattgagaatttcatattctgttaggc
taaaatccatttttctatatttcatattggatgggttattcattcatgta
taattttctactatcaaaatattagttcctctagttattcagctatgaaa
aatcttggcatacagccgggcatggtggtgcaggcctttaatcccagcac
tcgggaggcagaggaaggcagatttctgagttcaaggcctacaaagtgag
ttccaggacagccagagctacacagaaaaaccctgtcttgaaaaaccaaa
aaaaaaaaaaaaaaaaaaatcttggcatacatctgcagaatgcatcaaat
aattgcacttgtaacgtccactcaaatcacatatgaaagtatgtattata
aagctgtcaagcttctaatgtttgtttgaaaactttaattttatccctga
caacaaatgatagttgttttattaatgttacacagtattttgtattggag
aatatgtccttaatactaaggagtacataaatgcattttgaatgacagtt
gatttattcaggtagaattgtgttccattaaagaaaatacatcattaatt
tcacaaaataattcagcattcagtgaaagtattttatgcatactcctcct
tttcattaaacacattattaagaaggcatataattcataagttatggttt
agtaacacaattttattacttcctcaagtatattcagaaaagaaattaac
attttttattataaataatcaaattattcctattgttacaatttgggtac
ctgtgatgctttaaatgaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_138570090_138570418
seq2: B6Ng01-310N02.g_79_521

seq1  CAATAATTATTTCTATTTATTAA------------TT----------AAC  28
      |||||||||||||||||||  ||            ||          || 
seq2  CAATAATTATTTCTATTTAAAAAAATAGAAGCTTCTTCTACCGCACAAAT  50

seq1  TCATTCAT---TTGGGCAGGGTCC---CACTGTG--TGATCTTGGCTGGC  70
       ||| |||    || |  || | |    | || |  |  |||| | |   
seq2  ACATACATGGAATGTGTTGGTTTCAGAAATTGAGAATACTCTTCGGTATT  100

seq1  CT--AGAACTCACTGCATAGAC-CAAG---------------------CC  96
       |  | || | | |  ||||||  |||                       
seq2  TTAAAAAATTTAGT-AATAGACTTAAGGTATTTGTTGTAATGTGGATTGT  149

seq1  GGCCTCAAAC-ACAGAGAAAGAAATCATATTCTCTGAG----AAA-----  136
      |  ||  ||| |  ||||   |  ||||||||| | ||    |||     
seq2  GAACTAGAACTATTGAGA---ATTTCATATTCTGTTAGGCTAAAATCCAT  196

seq1  ------------CATA-------------------------AAAACTAAA  149
                  ||||                         ||   |  |
seq2  TTTTCTATATTTCATATTGGATGGGTTATTCATTCATGTATAATTTTCTA  246

seq1  CTGTTTAAAAAACA--------------ACAACAACAACAAA--------  177
      || |  ||| |  |               || | |  | |||        
seq2  CTATCAAAATATTAGTTCCTCTAGTTATTCAGCTATGAAAAATCTTGGCA  296

seq1  -ACAGCTGGGCGTGGTGGCGCACACCTTTAATCCCAGCACTCTGGAGGCA  226
       ||||| |||| |||||| |||  |||||||||||||||||| |||||||
seq2  TACAGCCGGGCATGGTGGTGCAGGCCTTTAATCCCAGCACTCGGGAGGCA  346

seq1  GAGGAAGGCGGATTTCTGAGTTCAAAGCCAGCCTGGTCTACAGAGTGAGT  276
      ||||||||| |||||||||||||||         || ||||| |||||||
seq2  GAGGAAGGCAGATTTCTGAGTTCAA---------GGCCTACAAAGTGAGT  387

seq1  TCCAGAACAGCCAGGGCTATACAGAGAAACCCTGTCTGGAAA---GAAAA  323
      ||||| |||||||| |||| ||||| ||||||||||| ||||    ||||
seq2  TCCAGGACAGCCAGAGCTACACAGAAAAACCCTGTCTTGAAAAACCAAAA  437

seq1  AAAAAA  329
      ||||||
seq2  AAAAAA  443