BAC Information

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BAC

Clone NameB6Ng01-313L19
Chromosome5 (Build37)
Map Location 71,512,897 - 71,514,047
singlet/doubletsinglet
Overlap genenone
Upstream geneGabrg1, Gabra2
Downstream geneLOC635092, 4930503B16Rik, Gabra4, Gabrb1, LOC666545
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313L19.bB6Ng01-313L19.g
ACCGA104865GA104866
length9471,144
definitionB6Ng01-313L19.b B6Ng01-313L19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgagccccatttattaatggggtcatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatctgatttaggataggtaaagatcatttcccaatctgctggtggcct
ttttgtcttattgatggtgtcttttgccttacagaagctttgcagtttca
tgaggtcccatttgtcaattcttgatcttacagcacaagccattgctgtt
ctgttcaggaattttttccctctaccaatatcttcgaggcttttccccac
tttctcctctataagtttcagggtctctggttttatgtggagctccttga
tccacttatatttgaccttcgtacaaggagataagaatagatcaattagc
attgttctacaggataaccaccagttgtgccagcaccatttgttgaaaat
gctatcttttttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccatttg
tctacttgtctctctctataccagaaccatgctgttttttattacaattg
ctctgtagtaaagctttaggtcaggcatggttattccaccagaggttctt
ttatttttgagaagagtttttgctatcctaggttttttgttactccagat
gaatttgtagattgctctttctaattcgttgaagaattgagttggaattt
tgatggggattgcattgaatctgtagattgcttttggcaaaatagccatt
tttacaatgttgatcctgccaatccatcagcatgggagacctttccatct
tctgagatctttaatttctttcttcagagacttgaagttcttatcataca
gatatttcacttgcttagttagagtcaagccaagatattttatattt

gaattctcacagtgcatagtgaagcctaaagaaagatataaaggtggaca
aagtgtcatgatgtcccacagttatctcctttcatggacagttcagcacg
actcccattcttatggagaagctagagtaattcaaagtaaggcaccaaaa
ttgagcaagctatttctaacatccattgagcacacagtgtgagcttagca
cttgcataaatattagacacatagacagcattcagaagtgagttctaaag
gtttgtagtttaagagtatccacaaataactgtggtgcactgtggtaagt
aaaataattggtgtgtaagtctcttaaatactttgtagagactcaaatta
ggatgggaatcacactgggctagatggaggagactgggaggaagctttac
aaaggtttattttgtcaaattagtcctttggccaaaacccatactcaata
aaagtcttctaatttcttataatttgattttctggaaaaaaatcataatt
tattcatagaaatcttaatttattctttgaaatgccttactctaattagt
atttcttcctgacagattagagacaaataatcttatcagtttattcgaaa
gaaatagaggaatgaataatatagttagtcaaatagaatacatgtcagaa
acctgacataatctaagtttaaccttttaatactgttcacacaaagctca
ttaaacaattctgaacacttcagtagaaatgatggttgcatgtgtagcat
aaaactcaattaactagatcgtatatattgaaactgattttaagcaaaga
aatgaagagttcaaatattttaattacattctattttctgcaatctttga
caaatcatatttaagaaaataaaagttgatcaaaggcaaaattacttcca
aatgtctcataaccatggttaaatttcattggtcaactggctttgaaatc
aaactggagacacatctctgccatccctttagtctgttttccaagaaggt
ttcctgaacaagaaaggactgacctggaatggtgggggtgggacatccat
aaattgattctagaactggatagaagtagggtagggggcctggagtcatg
aacatgctaaaacactggtgctctttccaggacgattcagttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_71512897_71514047
seq2: B6Ng01-313L19.g_70_1213

seq1  GAATTCTCACAGTGCATAGTGAAGCCTAAAGAAAGATATAAAGGTGGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACAGTGCATAGTGAAGCCTAAAGAAAGATATAAAGGTGGACA  50

seq1  AAGTGTCATGATGTCCCACAGTTATCTCCTTTCATGGACAGTTCAGCACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTCATGATGTCCCACAGTTATCTCCTTTCATGGACAGTTCAGCACG  100

seq1  ACTCCTATTCTTATGGAGAAGCTAGAGTAATTCAAAGTAAGGCACCAAAA  150
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCATTCTTATGGAGAAGCTAGAGTAATTCAAAGTAAGGCACCAAAA  150

seq1  TTGAGCAAGCTATTTCTAACATCCATTGAGCACACAGTGTGAGCTTAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCAAGCTATTTCTAACATCCATTGAGCACACAGTGTGAGCTTAGCA  200

seq1  CTTGCATAAATATTAGACACATAGACAGCATTCAGAAGTGAGTTCTAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCATAAATATTAGACACATAGACAGCATTCAGAAGTGAGTTCTAAAG  250

seq1  GTTTGTAGTTTAAGAGTATCCACAAATAACTGTGGTGCACTGTGGTAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTAGTTTAAGAGTATCCACAAATAACTGTGGTGCACTGTGGTAAGT  300

seq1  AAAATAATTGGTGTGTAAGTCTCTTAAATACTTTGTAGAGACTCAAATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATTGGTGTGTAAGTCTCTTAAATACTTTGTAGAGACTCAAATTA  350

seq1  GGATGGGAATCACACTGGGCTAGATGGAGGAGACTGGGAGGAAGCTTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGAATCACACTGGGCTAGATGGAGGAGACTGGGAGGAAGCTTTAC  400

seq1  AAAGGTTTATTTTGTCAAATTAGTCCTTTGGCCAAAACCCATACTCAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTTATTTTGTCAAATTAGTCCTTTGGCCAAAACCCATACTCAATA  450

seq1  AAAGTCTTCTAATTTCTTATAATTTGATTTTCTGGAAAAAAATCATAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTTCTAATTTCTTATAATTTGATTTTCTGGAAAAAAATCATAATT  500

seq1  TATTCATAGAAATCTTAATTTATTCTTTGAAATGCCTTACTCTAATTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATAGAAATCTTAATTTATTCTTTGAAATGCCTTACTCTAATTAGT  550

seq1  ATTTCTTCCTGACAGATTAGAGACAAATAATCTTATCAGTTTATTCGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTCCTGACAGATTAGAGACAAATAATCTTATCAGTTTATTCGAAA  600

seq1  GAAATAGAGGAATGAATAATATAGTTAGTCAAATAGAATACATGTCAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGAGGAATGAATAATATAGTTAGTCAAATAGAATACATGTCAGAA  650

seq1  ACCTGACATAATCTAAGTTTAACCTTTTAATACTGTTCACACAAAGCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGACATAATCTAAGTTTAACCTTTTAATACTGTTCACACAAAGCTCA  700

seq1  TTAAACAATTCTGAACACTTCAGTAGAAATGATGGTTGCATGTGTAGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAATTCTGAACACTTCAGTAGAAATGATGGTTGCATGTGTAGCAT  750

seq1  AAAACTCAATTAACTAGATCGTATATATTGAAACTGATTTTAAGCAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCAATTAACTAGATCGTATATATTGAAACTGATTTTAAGCAAAGA  800

seq1  AATGAAGAGTTCAAATATTTTAATTACATTCTATTTTCTGCAATCTTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGAGTTCAAATATTTTAATTACATTCTATTTTCTGCAATCTTTGA  850

seq1  CAAATCATATTTAAGAAAATAAAAGTTGATCAAAGGCAAAATTACTTCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCATATTTAAGAAAATAAAAGTTGATCAAAGGCAAAATTACTTCCA  900

seq1  AATGTCTCATAACCATGGTTAAATTTCATT-GTCAACTGGCTTTGAAATC  949
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AATGTCTCATAACCATGGTTAAATTTCATTGGTCAACTGGCTTTGAAATC  950

seq1  AAACTGGAGACACATCTCTGCCCATCCC-TTAGTCTGTTTCCAAAGAAGG  998
      |||||||||||||||||||| ||||||| ||||||||||| | |||||||
seq2  AAACTGGAGACACATCTCTG-CCATCCCTTTAGTCTGTTTTCCAAGAAGG  999

seq1  TTTCCTGAACAAGAAA-GACTGACCTGGAA---TGTGGGTGGGACCATCC  1044
      |||||||||||||||| |||||||||||||   || |||||||| ||| |
seq2  TTTCCTGAACAAGAAAGGACTGACCTGGAATGGTGGGGGTGGGA-CAT-C  1047

seq1  CATAAAATGAATTCCTAAGACTGAATAGAAAGTAGGGGAAGGGGGCTGGA  1094
      |||||| |||  | |||  |||| |||| |||||||| | |||| |||||
seq2  CATAAATTGA--TTCTAGAACTGGATAG-AAGTAGGGTAGGGGGCCTGGA  1094

seq1  GTCATGACAGTGCTTAAAACAACTTGGTGCTCTTTCAGAGGACAGGAATT  1144
      |||||||   ||| |||||||   ||||||||||||  |||||    |||
seq2  GTCATGAACATGC-TAAAACA--CTGGTGCTCTTTC-CAGGAC---GATT  1137

seq1  CAGTTCA  1151
      |||||||
seq2  CAGTTCA  1144


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