BAC Information

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BAC

Clone NameB6Ng01-313P11
Chromosome5 (Build37)
Map Location 44,226,831 - 44,417,003
singlet/doubletdoublet
Overlap geneBst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1
Upstream geneLOC433883, EG665934, Cpeb2, C1qtnf7, 4833430A08Rik, 5730509K17Rik, Fbxl5
Downstream geneLOC100041413, Tapt1, LOC100040717, LOC545747, Ldb2, LOC100041481
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313P11.bB6Ng01-313P11.g
ACCGA105035GA105036
length1,188304
definitionB6Ng01-313P11.b B6Ng01-313P11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,226,831 - 44,227,985)(44,416,700 - 44,417,003)
sequence
gaattcatgcagttgaatccttcttaacagtctgctttacgggaaccttt
attaccgcgacccgcagttctggttctggaatgagggatcttccttgtgc
cggtcccgagttttcttgtattttttcgtcccggattttttctcgtcccg
gatttcagcaccaattcttaatcgcgttctcacgcccggccaggaagaac
acaacagaccagaatcttctgcggcaaaactttattgcttacatctttgg
gagccaggagggcaagcgcccagtgcccagccccaaaaacgaaagccccc
ttcaataatgaaaccgaaaccccttccctatttaggagagttatatttcg
cctaggacgcatcactccctgattggctgcagcccatggccgagctgacg
ttcacgggaaaggtagagtacaagtagtcataaaatacccttggcacatg
cgcagattatttgtttaccacttagaacacaggatgtcagcgccatcttg
tgacggcgaatgtgggggcggctcccaacagatgtatatattatacatgc
aggatttacaaacaacgatatatgtttatatgtgtccacatacatacaga
cgtgggctgaagcacacaaacacactgtatagcattcaatgctacacgtg
caaagcctctaaacttatacacagcagctcctcccctcttggttgcgatt
taaatgcctagtggaagattgacattttatgtatagtattttttcctgtc
agtaaacctacaatgaagtttcttttataaattgggcacaataagaaaaa
acaagaacaacgagtaataaaatagaataacaatattatacaataattaa
aaattgaatgcgatctagcttttaaatatcccactgtattcatgcctcca
tgccagggtgaaatgaagagtgactgtgtgcgctcactgtgggcagaact
tctgtgctgcagactatgacagcaaacccagcacatttctcggcagaact
tcctagatagaattttttcttttgcagcttagaacctcagctaagcctag
aagaagacttcaagtcaagatttttacctaagaaagaagctcacagcttc
tccaagctatcaaatggctgcaccaacttgcctctggttgttttgaaggc
ctaaacaagctgcaagttccatgcatcctctctggcat

actctgtagaccaggctggcctcgaacttagaaatccacctgcctctgcc
tcccaagtgctgggattaaaggcgtgagccaccactgccctgcttctaaa
agtattcttaaattgaatggcctagggcctgtcaggatccaagaaagtgt
tccacacgagaagcctatttgctcacacacgtagttttaaagcattcttc
ttcaggactggagaaatggtctagaggtcgaggccttgcaaggctctgga
tacaagccagggagggagggagggagggacgtagggacagagggatggag
gaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_44226831_44227985
seq2: B6Ng01-313P11.b_83_1236

seq1  CTTTACGGGAACCTTTATTACCGCGACCCGCAGTTCTGGTTCTGGAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACGGGAACCTTTATTACCGCGACCCGCAGTTCTGGTTCTGGAATGA  50

seq1  GGGATCTTCCTTGTGCCGGTCCCGAGTTTTCTTGTATTTTTTCGTCCCGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCTTCCTTGTGCCGGTCCCGAGTTTTCTTGTATTTTTTCGTCCCGG  100

seq1  ATTTTTTCTCGTCCCGGATTTCAGCACCAATTCTTAATCGCGTTCTCACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTCTCGTCCCGGATTTCAGCACCAATTCTTAATCGCGTTCTCACG  150

seq1  CCCGGCCAGGAAGAACACAACAGACCAGAATCTTCTGCGGCAAAACTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGCCAGGAAGAACACAACAGACCAGAATCTTCTGCGGCAAAACTTTA  200

seq1  TTGCTTACATCTTTGGGAGCCAGGAGGGCAAGCGCCCAGTGCCCAGCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTACATCTTTGGGAGCCAGGAGGGCAAGCGCCCAGTGCCCAGCCCC  250

seq1  AAAAACGAAAGCCCCCTTCAATAATGAAACCGAAACCCCTTCCCTATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACGAAAGCCCCCTTCAATAATGAAACCGAAACCCCTTCCCTATTTA  300

seq1  GGAGAGTTATATTTCGCCTAGGACGCATCACTCCCTGATTGGCTGCAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGTTATATTTCGCCTAGGACGCATCACTCCCTGATTGGCTGCAGCC  350

seq1  CATGGCCGAGCTGACGTTCACGGGAAAGGTAGAGTACAAGTAGTCATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCCGAGCTGACGTTCACGGGAAAGGTAGAGTACAAGTAGTCATAAA  400

seq1  ATACCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGGA  450

seq1  TGTCAGCGCCATCTTGTGACGGCGAATGTGGGGGCGGCTCCCAACAGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCGCCATCTTGTGACGGCGAATGTGGGGGCGGCTCCCAACAGATG  500

seq1  TATATATTATACATGCAGGATTTACAAACAACGATATATGTTTATATGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTATACATGCAGGATTTACAAACAACGATATATGTTTATATGTG  550

seq1  TCCACATACATACAGACGTGGGCTGAAGCACACAAACACACTGTATAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATACATACAGACGTGGGCTGAAGCACACAAACACACTGTATAGCA  600

seq1  TTCAATGCTACACGTGCAAAGCCTCTAAACTTATACACAGCAGCTCCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGCTACACGTGCAAAGCCTCTAAACTTATACACAGCAGCTCCTCC  650

seq1  CCTCTTGGTTGCGATTTAAATGCCTAGTGGAAGATTGACATTTTATGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGGTTGCGATTTAAATGCCTAGTGGAAGATTGACATTTTATGTAT  700

seq1  AGTATTTTTTCCTGTCAGTAAACCTACAATGAAGTTTCTTTTATAAATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTTTTCCTGTCAGTAAACCTACAATGAAGTTTCTTTTATAAATTG  750

seq1  GGCACAATAAGAAAAAACAAGAACAACGAGTAATAAAATAGAATAACAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAATAAGAAAAAACAAGAACAACGAGTAATAAAATAGAATAACAAT  800

seq1  ATTATACAATAATTAAAAATTGAATGCGATCTAGCTTTTAAATATCCCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACAATAATTAAAAATTGAATGCGATCTAGCTTTTAAATATCCCAC  850

seq1  TGTATTCATGCCTCCATGCCAGGGTGAAATGAAGAGTGACTGTGTGCGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCATGCCTCCATGCCAGGGTGAAATGAAGAGTGACTGTGTGCGCT  900

seq1  CACTGTGGGCAGAACTTCTGTGCTGCAGACTATGACAGCAAACCCAGCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGGGCAGAACTTCTGTGCTGCAGACTATGACAGCAAACCCAGCAC  950

seq1  ATTTCTTCGGCAGAACTTCCTAGATAGA--TTTTTCTTTTGCAGGCTTAG  998
      ||||| ||||||||||||||||||||||  ||||||||||||| ||||| 
seq2  ATTTC-TCGGCAGAACTTCCTAGATAGAATTTTTTCTTTTGCA-GCTTA-  997

seq1  GAACCTCAGCTAAGCCTAG-AGAAGACTTTCCAAGTCAAGAATTTTTACC  1047
      ||||||||||||||||||| |||||||||  ||||||||| |||||||||
seq2  GAACCTCAGCTAAGCCTAGAAGAAGACTT--CAAGTCAAG-ATTTTTACC  1044

seq1  TA--GAAGAAGCTCACAGCTTCTCCAGCATATCCAAATTGCCGGCACAAC  1095
      ||   |||||||||||||||||||||   ||| ||||| || |   ||||
seq2  TAAGAAAGAAGCTCACAGCTTCTCCAAGCTAT-CAAATGGCTGCACCAAC  1093

seq1  T--GCTCTGG-TGTTTTGAGAGCCAAAACAAAGGCTGCAAG-TCCATGCC  1141
      |   |||||| ||||||||  ||| ||||||  |||||||| ||||||| 
seq2  TTGCCTCTGGTTGTTTTGAAGGCCTAAACAA--GCTGCAAGTTCCATGC-  1140

seq1  AATCC-ATCTGGCAT  1155
       ||||  ||||||||
seq2  -ATCCTCTCTGGCAT  1154


seq1: chr5_44416700_44417003
seq2: B6Ng01-313P11.g_73_376 (reverse)

seq1  ATTCCTCCATCCCTCTGTCCCTACGTCCCTCCCTCCCTCCCTCCCTGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCCATCCCTCTGTCCCTACGTCCCTCCCTCCCTCCCTCCCTGGCT  50

seq1  TGTATCCAGAGCCTTGCAAGGCCTCGACCTCTAGACCATTTCTCCAGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCAGAGCCTTGCAAGGCCTCGACCTCTAGACCATTTCTCCAGTCC  100

seq1  TGAAGAAGAATGCTTTAAAACTACGTGTGTGAGCAAATAGGCTTCTCGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAGAATGCTTTAAAACTACGTGTGTGAGCAAATAGGCTTCTCGTG  150

seq1  TGGAACACTTTCTTGGATCCTGACAGGCCCTAGGCCATTCAATTTAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACACTTTCTTGGATCCTGACAGGCCCTAGGCCATTCAATTTAAGAA  200

seq1  TACTTTTAGAAGCAGGGCAGTGGTGGCTCACGCCTTTAATCCCAGCACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTAGAAGCAGGGCAGTGGTGGCTCACGCCTTTAATCCCAGCACTT  250

seq1  GGGAGGCAGAGGCAGGTGGATTTCTAAGTTCGAGGCCAGCCTGGTCTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCAGAGGCAGGTGGATTTCTAAGTTCGAGGCCAGCCTGGTCTACA  300

seq1  GAGT  304
      ||||
seq2  GAGT  304


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