MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-315M12
Chromosome	11 (Build37)	5 (Build37)
Map Location	107,610,073 - 107,610,312	113,896,420 - 113,896,516
singlet/doublet	singlet	singlet
Overlap gene	Cacng4
Upstream gene	Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692, Pitpnc1, Psmd12, A830035A12Rik, Helz, Cacng1
Downstream gene	Cacng5, Prkca, Apoh, LOC100041381, Ccdc46, Olfr1397-ps1
Link	Open Mouse BAC browser

Click to get alignment info.

name	Gm885 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:380732 MGI:2685731
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Polg2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:50776 MGI:1354947
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ddx5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13207 MGI:105037
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccdc45 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320162 MGI:2443502
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Smurf2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66313 MGI:1913563
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666873 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666873
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Kpna2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16647 MGI:103561
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1810010H24Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69066 MGI:1916316
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 16 ESTs, 2 Proteins

name	Bptf (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:207165 MGI:2444008
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042899 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042899
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 3 Proteins pseudo : _no_value

name	Nol11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68979 MGI:1916229
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC671692 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:671692
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	Pitpnc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71795 MGI:1919045
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Psmd12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66997 MGI:1914247
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	A830035A12Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:442842 MGI:3045382
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	Helz (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78455 MGI:1925705
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cacng1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12299 MGI:1206582
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cacng4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54377 MGI:1859167
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cacng5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:140723 MGI:2157946
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Prkca (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18750 MGI:97595
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Apoh (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11818 MGI:88058
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041381 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041381
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins pseudo : _no_value

name	Ccdc46 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76380 MGI:1923673
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	Olfr1397-ps1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:258193 MGI:3031231
definition	gene_synonym : MOR5-3 note : olfactory receptor 1397, pseudogene 1 pseudo : _no_value

name	Gm885 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803484 GeneID:380732 MGI:2685731
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gene model 885, (NCBI) transcript_id : NM_001033435.2

name	Polg2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7657466 GeneID:50776 MGI:1354947
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : polymerase (DNA directed), gamma 2, accessory subunit transcript_id : NM_015810.1

name	Ddx5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142378584 GeneID:13207 MGI:105037
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 transcript_id : NM_007840.3

name	Ccdc45 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142351923 GeneID:320162 MGI:2443502
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 45 transcript_id : NM_177088.2

name	Smurf2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:57977276 GeneID:66313 MGI:1913563
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SMAD specific E3 ubiquitin protein ligase 2 transcript_id : NM_025481.1

name	Kpna2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:83281453 GeneID:16647 MGI:103561
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : karyopherin (importin) alpha 2 transcript_id : NM_010655.3

name	1810010H24Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149262547 GeneID:69066 MGI:1916316
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 16 ESTs, 2 Proteins product : RIKEN cDNA 1810010H24 gene transcript_id : XM_286373.6

name	Bptf (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:140969816 GeneID:207165 MGI:2444008
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : bromodomain PHD finger transcription factor transcript_id : NM_176850.2

name	Nol11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:19526871 GeneID:68979 MGI:1916229
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nucleolar protein 11 transcript_id : NM_133702.1

name	Pitpnc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84490397 GeneID:71795 MGI:1919045
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphatidylinositol transfer protein, cytoplasmic 1 transcript_id : NM_145823.2

name	Psmd12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802643 GeneID:66997 MGI:1914247
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : proteasome (prosome, macropain) 26S subunit, non-ATPase, 12 transcript_id : NM_025894.2

name	A830035A12Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94390904 GeneID:442842 MGI:3045382
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : RIKEN cDNA A830035A12 gene transcript_id : XM_986896.1

name	Helz (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:50355942 GeneID:78455 MGI:1925705
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : helicase with zinc finger domain transcript_id : NM_198298.1

name	Cacng1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70778905 GeneID:12299 MGI:1206582
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calcium channel, voltage-dependent, gamma subunit 1 transcript_id : NM_007582.2

name	Cacng4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130751 GeneID:54377 MGI:1859167
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calcium channel, voltage-dependent, gamma subunit 4 transcript_id : NM_019431.2

name	Cacng5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142370454 GeneID:140723 MGI:2157946
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calcium channel, voltage-dependent, gamma subunit 5 transcript_id : NM_080644.3

name	Prkca (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142364622 GeneID:18750 MGI:97595
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein kinase C, alpha transcript_id : NM_011101.2

name	Apoh (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94400778 GeneID:11818 MGI:88058
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : apolipoprotein H transcript_id : NM_013475.3

name	Ccdc46 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125661051 GeneID:76380 MGI:1923673
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 46 transcript_id : NM_029606.3

name	Ccdc46 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125661053 GeneID:76380 MGI:1923673
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 46 transcript_id : NM_145688.2

name	Ccdc46 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125661055 GeneID:76380 MGI:1923673
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 46 transcript_id : NM_029586.2

name	Gm885 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701947 CCDS:CCDS25560.1 GeneID:380732 MGI:2685731
definition	codon_start : 1 product : hypothetical protein LOC380732 protein_id : NP_001028607.1

name	Polg2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7657467 CCDS:CCDS25561.1 GeneID:50776 MGI:1354947
definition	GO_component : GO:0005739 - mitochondrion [Evidence TAS] GO_function : GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]; GO:0003895 - gamma DNA-directed DNA polymerase activity [Evidence ISS] [Evidence IDA]; GO:0004820 - glycine-tRNA ligase activity [Evidence IEA]; GO:0042802 - identical protein binding [Evidence IPI]; GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006281 - DNA repair [Evidence TAS]; GO:0006260 - DNA replication [Evidence TAS]; GO:0006426 - glycyl-tRNA aminoacylation [Evidence IEA]; GO:0006412 - protein biosynthesis [Evidence IEA] codon_start : 1 exception : mismatches in translation note : mitochondrial polymerase gamma 2; polymerase, gamma 2 product : polymerase (DNA directed), gamma 2, accessory subunit protein_id : NP_056625.1

name	Ddx5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83816893 CCDS:CCDS25562.1 GeneID:13207 MGI:105037
definition	GO_component : GO:0005634 - nucleus [Evidence IC] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003723 - RNA binding [Evidence IEA]; GO:0003724 - RNA helicase activity [Evidence IEA]; GO:0003712 - transcription cofactor activity [Evidence IDA] GO_process : GO:0045941 - positive regulation of transcription [Evidence IDA] codon_start : 1 note : D-E-A-D (aspartate-glutamate-alanine-aspartate) box polypeptide 5; DEAD (aspartate-glutamate-alanine-aspartate) box polypeptide 5; DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5; p68 RNA helicase product : DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 protein_id : NP_031866.2

name	Ccdc45 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28893009 CCDS:CCDS25563.1 GeneID:320162 MGI:2443502
definition	codon_start : 1 exception : mismatches in translation product : coiled-coil domain containing 45 protein_id : NP_796062.1

name	Smurf2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:57977277 CCDS:CCDS25564.1 GeneID:66313 MGI:1913563
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0004842 - ubiquitin-protein ligase activity [Evidence IEA] GO_process : GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 exception : mismatches in translation note : novel protein similar to human E3 ubiquitin ligase SMURF2 product : SMAD specific E3 ubiquitin protein ligase 2 protein_id : NP_079757.1

name	Kpna2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754474 CCDS:CCDS25565.1 GeneID:16647 MGI:103561
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0008565 - protein transporter activity [Evidence IDA] GO_process : GO:0006886 - intracellular protein transport [Evidence IEA]; GO:0006606 - protein import into nucleus [Evidence IDA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : importin alpha; pendulin; m-importin-alpha-P1 product : karyopherin (importin) alpha 2 protein_id : NP_034785.1

name	1810010H24Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149262548 GeneID:69066 MGI:1916316
definition	codon_start : 1 product : hypothetical protein LOC69066 protein_id : XP_286373.6

name	Bptf (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:140969817 GeneID:207165 MGI:2444008
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] GO_function : GO:0008094 - DNA-dependent ATPase activity [Evidence ISS]; GO:0005515 - protein binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence ISS]; GO:0008134 - transcription factor binding [Evidence ISS]; GO:0030528 - transcription regulator activity [Evidence ISS]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007420 - brain development [Evidence ISS]; GO:0006338 - chromatin remodeling [Evidence ISS]; GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence ISS]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 note : fetal Alzheimer antigen product : bromodomain PHD finger transcription factor protein_id : NP_789820.2

name	Nol11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19526872 CCDS:CCDS25566.1 GeneID:68979 MGI:1916229
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] codon_start : 1 exception : mismatches in translation product : nucleolar protein 11 protein_id : NP_598463.1

name	Pitpnc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22003862 CCDS:CCDS25567.1 GeneID:71795 MGI:1919045
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005545 - phosphatidylinositol binding [Evidence IC]; GO:0008526 - phosphatidylinositol transporter activity [Evidence ISS] GO_process : GO:0046488 - phosphatidylinositol metabolism [Evidence ISS]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : diabetic nephropathy-related protein product : retinal degeneration B beta protein_id : NP_665822.1

name	Psmd12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385384 CCDS:CCDS25568.1 GeneID:66997 MGI:1914247
definition	GO_component : GO:0005829 - cytosol [Evidence IEA]; GO:0043234 - protein complex [Evidence IEA] codon_start : 1 product : proteasome 26S non-ATPase subunit 12 protein_id : NP_080170.1

name	A830035A12Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94390905 GeneID:442842 MGI:3045382
definition	codon_start : 1 product : hypothetical protein protein_id : XP_991990.1

name	Helz (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:50355943 CCDS:CCDS25569.1 GeneID:78455 MGI:1925705
definition	GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : helicase with zinc finger domain protein_id : NP_938040.1

name	Cacng1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6671658 CCDS:CCDS25570.1 GeneID:12299 MGI:1206582
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005262 - calcium channel activity [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0005244 - voltage-gated ion channel activity [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : dihydropyridine receptor gamma 1 product : voltage-dependent calcium channel gamma-1 subunit protein_id : NP_031608.1

name	Cacng4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9506455 CCDS:CCDS25571.1 GeneID:54377 MGI:1859167
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005262 - calcium channel activity [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0005244 - voltage-gated ion channel activity [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0019226 - transmission of nerve impulse [Evidence IGI]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : voltage-dependent calcium channel gamma-4 subunit protein_id : NP_062304.1

name	Cacng5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21687006 CCDS:CCDS25572.1 GeneID:140723 MGI:2157946
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005262 - calcium channel activity [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0005244 - voltage-gated ion channel activity [Evidence IEA] GO_process : GO:0006816 - calcium ion transport [Evidence IEA]; GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : voltage dependent calcium channel gamma 5 subunit product : voltage-dependent calcium channel gamma-5 subunit protein_id : NP_542375.1

name	Prkca (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755078 CCDS:CCDS25573.1 GeneID:18750 MGI:97595
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0004698 - calcium-dependent protein kinase C activity [Evidence IDA]; GO:0019992 - diacylglycerol binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004697 - protein kinase C activity [Evidence IDA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IDA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006874 - calcium ion homeostasis [Evidence IMP]; GO:0002026 - cardiac inotropy [Evidence IMP]; GO:0000188 - inactivation of MAPK activity [Evidence IMP]; GO:0008629 - induction of apoptosis by intracellular signals [Evidence IMP]; GO:0050930 - induction of positive chemotaxis [Evidence IMP]; GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0046325 - negative regulation of glucose import [Evidence IMP]; GO:0046627 - negative regulation of insulin receptor signaling pathway [Evidence IMP]; GO:0001933 - negative regulation of protein amino acid phosphorylation [Evidence IMP]; GO:0006469 - negative regulation of protein kinase activity [Evidence IMP]; GO:0030593 - neutrophil chemotaxis [Evidence IMP]; GO:0050729 - positive regulation of inflammatory response [Evidence IMP]; GO:0001934 - positive regulation of protein amino acid phosphorylation [Evidence IMP]; GO:0006468 - protein amino acid phosphorylation [Evidence IDA]; GO:0006937 - regulation of muscle contraction [Evidence IMP]; GO:0050730 - regulation of peptidyl-tyrosine phosphorylation [Evidence IMP] codon_start : 1 exception : mismatches in translation note : protein kinase c-alpha product : protein kinase C, alpha protein_id : NP_035231.1

name	Apoh (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94400779 CCDS:CCDS25574.1 GeneID:11818 MGI:88058
definition	GO_function : GO:0008201 - heparin binding [Evidence IEA] codon_start : 1 exception : mismatches in translation note : beta-2-glycoprotein 1 product : apolipoprotein H protein_id : NP_038503.3

name	Ccdc46 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125661052 GeneID:76380 MGI:1923673
definition	codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : coiled-coil domain containing 46 isoform 2 protein_id : NP_083882.3

name	Ccdc46 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125661054 GeneID:76380 MGI:1923673
definition	codon_start : 1 note : isoform 3 is encoded by transcript variant 3 product : coiled-coil domain containing 46 isoform 3 protein_id : NP_663721.2

name	Ccdc46 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21729780 GeneID:76380 MGI:1923673
definition	codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : coiled-coil domain containing 46 isoform 1 protein_id : NP_083862.1

name	LOC666873 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666873
definition	number : 1 pseudo : _no_value

name	LOC666873 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666873
definition	number : 2 pseudo : _no_value

name	LOC671692 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:671692
definition	number : 1 pseudo : _no_value

name	LOC671692 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:671692
definition	number : 2 pseudo : _no_value

name	LOC671692 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:671692
definition	number : 3 pseudo : _no_value

name	LOC100041381 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041381
definition	number : 1 pseudo : _no_value

name	LOC100041381 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041381
definition	number : 2 pseudo : _no_value

name	LOC100042899 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149262549 GeneID:100042899
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 3 Proteins product : similar to Rpl30 protein pseudo : _no_value transcript_id : XR_034459.1

clone name	MSMg01-374G05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-326E04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-525K10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-260J05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-262M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-380A07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-435E06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-136A22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-304K18
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-498N01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-147G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375O06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-443E05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-177N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119M17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-528N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-344O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-048I16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-501B08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-171E15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-352O06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-121L18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-317E23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-106A12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-265J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-317K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372H14
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-299D04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-509N07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-452K17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-452G08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-190L21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-509C15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-167B13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-147K15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-329A06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-133A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-514J04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-071A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392A09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-297O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-057C06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-500B04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-319G03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-131I05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-413L12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-408C22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-437P12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-124P22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-536J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-158C04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-415J16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-524J18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349H10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-140O04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-337O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-342G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-340P02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-385F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-182O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-047N21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-068E08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-363O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-528F15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-304M12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-307G19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-448K04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-112M04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-107G04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-095H22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-217C22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-435J15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-541J23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-060O24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-171H20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-196A12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-195N08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-099O23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-494M13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-516K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-135B15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-280G05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-132J10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-107O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-495D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-514J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-356H21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-202E21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-290N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-153H23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-458P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-094J01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-531J13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-091O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-233P19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-118G22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-149B01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-160E10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-422D21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-380G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-326B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278M23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-103M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152H18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-350H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321A17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-347G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144N18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-346J18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123M21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-340D01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-304D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163F09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-009K11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-187E08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-046P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228N15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-144N18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-196F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073N02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-317B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181M05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-078C24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-013M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236P07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-206J23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-275O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145G19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170F12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317H19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-003J04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333O12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-285M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162D21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-184L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287G09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-229N07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-341N09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-222L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315M12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-306D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092J17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289A14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-276G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189M14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-209N17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-249I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025N02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-004H16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179P01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-085M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-052K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335B19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-290K14
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-315M12.b	B6Ng01-315M12.g
ACC	GA106339	GA106340
length	240	252
definition	B6Ng01-315M12.b	B6Ng01-315M12.g
singlet/doublet	singlet	singlet
BLAST hit	unique	unique
Map location.	(107,610,073 - 107,610,312)	(113,896,420 - 113,896,516)
sequence	ctttgtgtttcctgagctttctgccatgccagtaaacaaaccacaaaagc tcatttaagaggctagatccttccactgtaagaggaaacatggtgatgga ggcatatttgaaatgaccacagatgccctggctgtggaagctggtgaacc aggcaagaactgtggtagtggcaggaatgtgtgtatgtgtttctgtgtgt gtgagtgtatgtgtacatgagtgtatgtgagtaggtgtgt	aaatgaagccacattcaaatataggctgatgaggtttgagtgtgtgcatg agtgtgcatgagtgtacatatgtgtgcatgcgtgtatgagtgcatgtttg tcacatgtgtgtgtttgagtgtgtatgtacacatgggggcacatgcatgt gtgaatacaagtgtgtgtgcatgcatgagtatgtgtgtaagtgtacacgc agacatctgtgagtgagtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgt gt
quality values	Open. Hide. 59 59 62 62 62 62 59 59 62 62 62 62 59 62 59 59 62 62 62 62 62 59 59 49 49 15 56 59 50 54 33 46 59 59 62 62 59 59 62 62 62 59 59 62 62 62 62 62 62 62 62 59 59 62 62 59 62 62 62 62 62 62 62 62 62 59 59 62 56 59 59 59 56 54 43 59 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 59 62 62 59 59 62 59 59 62 62 62 62 62 62 62 62 62 62 62 59 62 54 62 62 59 59 59 62 62 62 62 62 62 59 56 49 62 62 62 59 62 62 62 59 62 62 62 62 62 62 59 62 62 62 59 51 59 62 62 62 62 62 62 62 62 62 62 43 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 46 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 40 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 58 58 58 58 22 12	Open. Hide. 59 62 59 49 51 48 32 30 32 33 46 56 56 62 62 59 59 62 62 62 62 62 59 62 62 62 62 62 59 59 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 43 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 49 62 62 62 62 62 46 62 62 54 56 46 62 62 62 62 62 62 46 62 62 62 62 62 62 62 62 62 62 62 62 62 62 31 46 46 30 30 46 62 62 52 62 46 46 41 46 21 12 4

Alignment Information

BAC End 1

BAC End 2

seq1: chr11_107610073_107610312
seq2: B6Ng01-315M12.b_54_293

seq1  CTTTGTGTTTCCTGAGCTTTCTGCCATGCCAGTAAACAAACCACAAAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGTTTCCTGAGCTTTCTGCCATGCCAGTAAACAAACCACAAAAGC  50

seq1  TCATTTAAGAGGCTAGATCCTTCCACTGTAAGAGGAAACATGGTGATGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAAGAGGCTAGATCCTTCCACTGTAAGAGGAAACATGGTGATGGA  100

seq1  GGCATATTTGAAATGACCACAGATGCCCTGGCTGTGGAAGCTGGTGAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATATTTGAAATGACCACAGATGCCCTGGCTGTGGAAGCTGGTGAACC  150

seq1  AGGCAAGAACTGTGGTAGTGGCAGGAATGTGTGTATGTGTTTCTGTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGAACTGTGGTAGTGGCAGGAATGTGTGTATGTGTTTCTGTGTGT  200

seq1  GTGAGTGTATGTGTACATGAGTGTATGTGAGTAGGTGTGT  240
      ||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGTATGTGTACATGAGTGTATGTGAGTAGGTGTGT  240

seq1: chr5_113896420_113896516
seq2: B6Ng01-315M12.g_157_322 (reverse)

seq1  ACACACACACACACACACACACACACACACACTCACTCACTCACACA---  47
      ||||||||||||||||||||||||||||||||||||||||||||| |   
seq2  ACACACACACACACACACACACACACACACACTCACTCACTCACAGATGT  50

seq1  -------CACACT--CTCACAAACACACACATACACACTCACT----CTC  84
              |||||  | |||| || ||  ||| ||||| ||||     ||
seq2  CTGCGTGTACACTTACACACATACTCATGCATGCACACACACTTGTATTC  100

seq1  ACACATGCA------CACA-------------------------------  97
      |||||||||      | ||                               
seq2  ACACATGCATGTGCCCCCATGTGTACATACACACTCAAACACACACATGT  150

seq1  ----------------  97
                      
seq2  GACAAACATGCACTCA  166

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Alignment Information