BAC Information

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BAC

Clone NameB6Ng01-316L12
Chromosome5 (Build37)
Map Location 15,112,600 - 15,131,860
singlet/doubletdoublet
Overlap geneSpeer4d
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c
Downstream gene4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316L12.bB6Ng01-316L12.g
ACCGA107044GA107045
length607721
definitionB6Ng01-316L12.b B6Ng01-316L12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,131,230 - 15,131,860)(15,112,600 - 15,113,389)
sequence
gaattcagcatttattccctgacggcaaatcctacctatctctccatgag
atgaggctttgtctcacattaagaactgcagaatgcaatacatcaaaacc
ttgctgatctccatggtggtgatgcacaccacagcctcacggtgaacatc
tacactggcagatttcagggtatgttgaagtagtccaccatgtcagtgta
acctgcaaagtgccatgagacaatactaatagaaattcctccacattaga
tttcactatggtcttcaaaattattttgtaaagaaatactatgagttcac
agatacacacacacacacaaacatgaagaccagaggactttatgggagga
ttgttctctctactatgtgcattccaaggaaaaaattctggtttctaggc
ttgacagcaatgatgaatacctgctcaaccatgtcattagctcatcaact
gatcatctaaaccaaggaatttcatatgctctatatttgtatttatgttc
cctttctctctctctctctgtctctctgtttctgtctgtctctctctttc
tgtctctctgtctctgtctctgtcttttctctctctctctctctctctct
ctctctc

gaattcctcttctcaggtacaactgggtctttgtcaagttgataaaatgc
aagaaacatatcgtgcaaatgaaacggaagcagcattgaaagtctgagta
gccggtgggcatccctgcacatgtgcctgtgggtagctgacagatcagct
ggtttaaaagcaaggctggtagtctagtcaatcatggtcgctgttctagt
gctaaaccagattctggagaaagctctattcttgttaagacttgagagga
gcttggtggctgattatgggatggatccccgggtggggtagtctctggat
ggtccatcctttcctcttaactttgtctccgtaactccttccatgggaat
tttgttccctattctgatactactgcatatgccagcaagattttgctgaa
aggaccttgatatagctgtcttgtgaggctatgccagtacctggcaaaca
gaagtggatgctcacagtcatttataggatggagcacagggcctccaatg
gagaagctagagaaagcacccaaggagctgaagggatctgcaaccctata
ggtggaacaacaatatgaactaaccagtacccccagagcttgtgtctcta
gctgcatatgtagcagaagatggcctcgtcagccatcattggaaagagag
gcccctaggtcttgcaaactttatatgccccagtacagggccaagaaatg
ggagtgggtgggtgggggagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15131230_15131860
seq2: B6Ng01-316L12.b_49_655 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGACAGAGACAGAGACA  50
      |||||||||||||||||||||||||||||| | |||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA-AAAGACAGAGACAGAGACA  49

seq1  GAGACAGAGACAGAGACAGAGAGACAGAAAGAGAGAGACAGACAGAGAAA  100
      |||| | ||| ||||| ||| ||||||||| ||||||||           
seq2  GAGAGACAGAAAGAGAGAGACAGACAGAAACAGAGAGAC-----------  88

seq1  CAGAGAGACAGAGAGAGTAAGGAAACATAAATACAAATATAGAGCTTATG  150
         ||||| |||||||| |||| |||||||||||||||||||||| ||||
seq2  ---AGAGAGAGAGAGAGAAAGGGAACATAAATACAAATATAGAGCATATG  135

seq1  AAATGGCTTGGTTTAGATGATTAGTTGATGAGTTAATGACATGGTTGAGC  200
      ||||  ||||||||||||||| |||||||||| |||||||||||||||||
seq2  AAATTCCTTGGTTTAGATGATCAGTTGATGAGCTAATGACATGGTTGAGC  185

seq1  AGGTATTCATCATTGCTGTCAAGCCTAGAAACCAGAATTTTTTCCTTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTCATCATTGCTGTCAAGCCTAGAAACCAGAATTTTTTCCTTGGA  235

seq1  ATGCACATAGTAGAGAGAACAATCCTCCCTTAAAGTCCTCTGGTCTTCAT  300
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATGCACATAGTAGAGAGAACAATCCTCCCATAAAGTCCTCTGGTCTTCAT  285

seq1  GTTTGTGTGTGTGTGTGTATCTGTGAACCCATAGTATTTCTTTACAAAAT  350
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GTTTGTGTGTGTGTGTGTATCTGTGAACTCATAGTATTTCTTTACAAAAT  335

seq1  GACATTGAAGACCATAGTGAAATCTAATGTGGAGGAATCCTGCAGATTTC  400
       |  ||||||||||||||||||||||||||||||||         |||||
seq2  AATTTTGAAGACCATAGTGAAATCTAATGTGGAGGA---------ATTTC  376

seq1  TATTAGTATTGTCTCATGGCACTTTGCAGGTTACACTGACATGGTGGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTATTGTCTCATGGCACTTTGCAGGTTACACTGACATGGTGGACT  426

seq1  ACTTCAACATACCCTGAAACCTGCCAGTGTAGATGTTCACCGTGAGGCTG  500
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACTTCAACATACCCTGAAATCTGCCAGTGTAGATGTTCACCGTGAGGCTG  476

seq1  TGGTGTGCATCACCACCATGGAGATCAACAAGGTTTTGATGTATTGCATT  550
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGGTGTGCATCACCACCATGGAGATCAGCAAGGTTTTGATGTATTGCATT  526

seq1  CTGCAGTTCTTAATGTGAGACAAAGCCTCATCTCATGGAGAGATAGGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTTCTTAATGTGAGACAAAGCCTCATCTCATGGAGAGATAGGTAG  576

seq1  GATTTGCCGTCAGGGAATAAATGCTGAATTC  631
      |||||||||||||||||||||||||||||||
seq2  GATTTGCCGTCAGGGAATAAATGCTGAATTC  607


seq1: chr5_15112600_15113389
seq2: B6Ng01-316L12.g_1_788

seq1  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN  50
                                                        
seq2  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN  50

seq1  NNNNNNNNNNNNNNNNNGAATTCCTCTTCTCAGGTACAACTGGGTCTTTG  100
                       |||||||||||||||||||||||||||||||||
seq2  NNNNNNNNNNNNNNNNNGAATTCCTCTTCTCAGGTACAACTGGGTCTTTG  100

seq1  TCAAGTTGATAAAATGCAAGAAACATATCGTGCAAATGAAACGGAAGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTGATAAAATGCAAGAAACATATCGTGCAAATGAAACGGAAGCAG  150

seq1  CATTGAAAGTCTGAGTAGCCGGTGGGCATCCCTGCACATGTGCCTGTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAAAGTCTGAGTAGCCGGTGGGCATCCCTGCACATGTGCCTGTGGG  200

seq1  TAGCTGACAGATCAGCTGGTTTAAAAGCAAGGCTGGTGGTCTAGTCAATC  250
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TAGCTGACAGATCAGCTGGTTTAAAAGCAAGGCTGGTAGTCTAGTCAATC  250

seq1  ATGGTCGCTGTTCTAGTGCTAAACCAGATTCTGGAGAAAGCTCTATTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATGGTCGCTGTTCTAGTGCTAAACCAGATTCTGGAGAAAGCTCTATTCTT  300

seq1  GTTAAGACTTGAGAGGAGCTTGGTGGCTGATTATGGGATGGATCATCGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||  ||||
seq2  GTTAAGACTTGAGAGGAGCTTGGTGGCTGATTATGGGATGGATCCCCGGG  350

seq1  TGGGGTAGTCTCTGGATGGTCCATCCTTTCTTCTTAGCTTTGTCTCCGTA  400
      |||||||||||||||||||||||||||||| ||||| |||||||||||||
seq2  TGGGGTAGTCTCTGGATGGTCCATCCTTTCCTCTTAACTTTGTCTCCGTA  400

seq1  ACTCCTTCCATGGCTTTTTTGTTCCCTATTCTGACACTACTGCATATGCC  450
      |||||||||||||   |||||||||||||||||| |||||||||||||||
seq2  ACTCCTTCCATGGGAATTTTGTTCCCTATTCTGATACTACTGCATATGCC  450

seq1  AGCAAGATTTTGCTGAAAGGACCTTGATATAGCTGTCTTGTGAGGCTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGATTTTGCTGAAAGGACCTTGATATAGCTGTCTTGTGAGGCTATG  500

seq1  CCAGTGCCTGGCAAACACAGAAGTGGATGCTCACAGTCATCTATAGGATG  550
      ||||| ||||||||  |||||||||||||||||||||||| |||||||||
seq2  CCAGTACCTGGCAA--ACAGAAGTGGATGCTCACAGTCATTTATAGGATG  548

seq1  GAGCACAGGGCCTCCAATGGAGAAGCTAGAGAAAGCACCCAAGGAGCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACAGGGCCTCCAATGGAGAAGCTAGAGAAAGCACCCAAGGAGCTGA  598

seq1  AGGGATCTGCAACCCTATAAGTGGAACAACAATATGAACTAACCAGTACC  650
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGGGATCTGCAACCCTATAGGTGGAACAACAATATGAACTAACCAGTACC  648

seq1  CCCAGAGCTTGTGTCTCTAGCTGCATATGTAGCAGAAGATGGCCTAGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCCAGAGCTTGTGTCTCTAGCTGCATATGTAGCAGAAGATGGCCTCGTCA  698

seq1  GCCAGCATTGGGAAGAGAGGCCCCTAGGTCTTGCAAACTTTATATGCCGC  750
      |||| |||||| |||||||||||||||||||||||||||||||||||| |
seq2  GCCATCATTGGAAAGAGAGGCCCCTAGGTCTTGCAAACTTTATATGCCCC  748

seq1  AGTACAGGGCCAAGAAATAGGAGTGGGTGGGTGGGGGAGC  790
      |||||||||||||||||| |||||||||||||||||||||
seq2  AGTACAGGGCCAAGAAATGGGAGTGGGTGGGTGGGGGAGC  788


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