BAC Information

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BAC

Clone NameB6Ng01-318M15
Chromosome14 (Build37)5 (Build37)
Map Location 94,962,325 - 94,963,03749,909,932 - 49,911,038
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePcdh9, LOC100043356
Downstream geneLOC100043783, LOC677613, LOC100043784, LOC382931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318M15.bB6Ng01-318M15.g
ACCGA108587GA108588
length1,1511,100
definitionB6Ng01-318M15.b B6Ng01-318M15.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(94,962,325 - 94,963,037)(49,909,932 - 49,911,038)
sequence
gaattccgacccaaaagccccttaccccgtacagttcctagcttttgagc
cttgtggccgacatcctttatctcctgtgtgggatgcttgtgaatccgga
gctctgtcattaaactacttcatgtaattacctcaagatggtccttcttg
atattttgggtgcccgccgaatccggaattgagtgggggtttccccacta
ggttctatccttgatttgaggccaagcagagccatttagttagagctgag
agaagcaaatttgaatcactcatcttggagagtagtaggaacctctgtgg
aagtcacagtggcaggtgatctcaactggtcatcattggaaagagaggcc
cattggacacgcaaactttatatgcctcagtactggggaacgccggggcc
aaaaagagggaaagggtgggcacgggagtatttttgtaagagctcttgac
ttaagatttatgaaagaggtgactattagtgttagaaaaaatattctaaa
ctgaaaagaggcaaaagttaatactgggtgttctgacagtgcaattttga
aattaatgtgttattgtctgttcaataactctgtagtgacataggttaac
ttgtaattattggtcactggagatggaagtatttgtcatctattgaaact
aataacaaccaagaccgtagatcatgtccttgttggatgttgaggacttt
ccaaataataagttttggaccttaacctgatatttctttttcaaagtact
taatctgtcaaatgctctttccatcctcagcaacatctccttggctttgt
taataatttaaataaaatcactgacatgggtttttttatataaatttgca
taaaagttataaaaatttgttttgaggtattagtatattaggagaccact
aatcacaataatattactgctgttattaaaagtctatattaattttacaa
tcaagatttttttttgctactacatgttcagaactgattactaagcttaa
cagtgttctaactcataaacccatatggatttaaaaataaatcatccttt
gcctttccaaagttttaatgtattgtggagaaacttttctaagattgggt
gtaatctatctttaagggtggtaagtagtccatggttttgagatgccttt
c
gaattctatatttatatcccccatcacatggcttgttataatgggagagt
gtgtgcggaattgttgtgtttaaaaacggactttgtacttactccgctct
ctgatactgcgtatgcttttgcataggaatctgccatagaaaagatgctt
gggagaggaaaagagagacatggccactggaatgaaggtctaaacgttat
ctcttttcagccttccttcctgacacaacctgattctccctgtgaatgct
gatatgagagagaaaaggaagcaaataaatagatgtgtgtgaactcattg
agatcccagtggtttgttattcccattcctttctgtggctactgctacaa
tgggaggtactttcactgggtgggcttaataacaaagataacagtaataa
tagcactcatggtagtacagatgcatagaagaggacatcttaagtaacaa
ccaaagtcatgtttcagagtgaatacttaaataattttgcactgtctcat
taattctggtaaaggactagaagggatagcaactgctccctgaaagtcca
ctggactactgaccctggaagtcatccatctggaagatattgaggatgag
ggagaagcacagcaaccatattgctacaaatacaacaaatacttccttca
agccttctccacaagagatctatactcctctagcaagggggccaccgatg
ctgagaaaagacagacctcatgccatatttctcagcttggggacatggtc
cttcaaataaagaggacagaaaaccaaagaatgtcagttcctaaagaggg
tttaacaagctactaatataaactgaggttcaagttctttcacaggtcta
tcatggtgcaacaggatttaaattcaataaatgtcttttaggcatttact
agtttgtgaagcatcatgtaaatactaactagtagggaaaaaaaacagta
acttgtacaggaaatatattaatgagactacattatggctacaataataa
aaagccaaaatgaacgctggttcttagtggctaatgagacagagcagttg
tatagcacagtagaactctgcatggtgacatggtctgataaagttgtaga

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_94962325_94963037
seq2: B6Ng01-318M15.b_470_1192

seq1  TATTTTTGTAAGAGCTCTTGACTTAAGATTTATGAAAGAGGTGACTATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTGTAAGAGCTCTTGACTTAAGATTTATGAAAGAGGTGACTATTA  50

seq1  GTGTTAGAAAAAATATTCTAAACTGAAAAGAGGCAAAAGTTAATACTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGAAAAAATATTCTAAACTGAAAAGAGGCAAAAGTTAATACTGGG  100

seq1  TGTTCTGACAGTGCAATTTTGAAATTAATGTGTTATTGTCTGTTCAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGACAGTGCAATTTTGAAATTAATGTGTTATTGTCTGTTCAATAA  150

seq1  CTCTGTAGTGACATAGGTTAACTTGTAATTATTGGTCACTGGAGATGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAGTGACATAGGTTAACTTGTAATTATTGGTCACTGGAGATGGAA  200

seq1  GTATTTGTCATCTATTGAAACTAATAACAACCAAGACCGTAGATCATGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGTCATCTATTGAAACTAATAACAACCAAGACCGTAGATCATGTC  250

seq1  CTTGTTGGATGTTGAGGACTTTCCAAATAATAAGTTTTGGACCTTAACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGGATGTTGAGGACTTTCCAAATAATAAGTTTTGGACCTTAACCT  300

seq1  GATATTTCTTTTTCAAAGTACTTAATCTGTCAAATGCTCTTTCCATCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTCTTTTTCAAAGTACTTAATCTGTCAAATGCTCTTTCCATCCTC  350

seq1  AGCAACATCTCCTTGGCTTTGTTAATAATTTAAATAAAATCACTGACAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  AGCAACATCTCCTTGGCTTTGTTAATAATTTAAATAAAATCACTGACATG  400

seq1  GGGTTTTTTATATAAATTTGCATAAAAGTTATAAAAATTTGTTTTGAGGT  450
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTTTATATAAATTTGCATAAAAGTTATAAAAATTTGTTTTGAGGT  450

seq1  ATTAGTATATTAGGAGACCACTAATCACAATAAATATTACTGCTG-TATT  499
      ||||||||||||||||||||||||||||||| ||||||||||||| ||||
seq2  ATTAGTATATTAGGAGACCACTAATCACAAT-AATATTACTGCTGTTATT  499

seq1  -AAAGTCTATATTAATTTTACAATCAAGA-TTTTTTTTGCTACTACAATG  547
       |||||||||||||||||||||||||||| |||||||||||||||| |||
seq2  AAAAGTCTATATTAATTTTACAATCAAGATTTTTTTTTGCTACTAC-ATG  548

seq1  TTCAG-ACTGATTACTAAGC-TAACAGTGGTCCTAAACTCATAAA-CCAT  594
      ||||| |||||||||||||| |||||||| ||   |||||||||| ||||
seq2  TTCAGAACTGATTACTAAGCTTAACAGTGTTC--TAACTCATAAACCCAT  596

seq1  AT-GATTAAAAATAAAATCAT-CTTTG-CTTTCCAAAGTTTTAATGTAAT  641
      || |||| ||||  ||||||| ||||| ||||||||||||||||||| ||
seq2  ATGGATTTAAAAATAAATCATCCTTTGCCTTTCCAAAGTTTTAATGT-AT  645

seq1  TGT-GAGAAACTTTTCTAAGA-TGGGTGTAAT---TATTTTAGTGT-GTA  685
      ||| ||||||||||||||||| ||||||||||   | ||| || || |||
seq2  TGTGGAGAAACTTTTCTAAGATTGGGTGTAATCTATCTTTAAGGGTGGTA  695

seq1  GGTAGCACATTGGTTTAAGATGCCTTTC  713
       ||||  ||| | ||| |||||||||||
seq2  AGTAGTCCATGGTTTTGAGATGCCTTTC  723

seq1: chr5_49909932_49911038
seq2: B6Ng01-318M15.g_64_1163

seq1  GAATTCTATATTTATATCCCCGATCAAATGGCTTGTTATAGTGTCAGAGT  50
      ||||||||||||||||||||| |||| ||||||||||||| ||  |||||
seq2  GAATTCTATATTTATATCCCCCATCACATGGCTTGTTATAATGGGAGAGT  50

seq1  GTGTAGGGAACTGTTGTGTTTAAAAACGGACTTTCTACTTACTCGGCTCT  100
      ||||  |||| ||||||||||||||||||||||| ||||||||| |||||
seq2  GTGTGCGGAATTGTTGTGTTTAAAAACGGACTTTGTACTTACTCCGCTCT  100

seq1  CTAATACTGCATATGCATTTGCATACAGATCTGCCATAGAAAAGAGGCTT  150
      || ||||||| ||||| ||||||||   ||||||||||||||||| ||||
seq2  CTGATACTGCGTATGCTTTTGCATAGGAATCTGCCATAGAAAAGATGCTT  150

seq1  GGCA-AGCAGAGAGACAGACATGGCCACTGGAGTAAAGGTCTAAACGTTA  199
      || | || | | ||| |||||||||||||||| | |||||||||||||||
seq2  GGGAGAGGA-AAAGAGAGACATGGCCACTGGAATGAAGGTCTAAACGTTA  199

seq1  TCTCTTTTCAGCCTTCCTTCCTGACACAACCTGATTCTCCCTGTGAATGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTCAGCCTTCCTTCCTGACACAACCTGATTCTCCCTGTGAATGC  249

seq1  TGATATGAGAGAGAAAAGGAAGCAAAGAAATAGATGTGTGTGAACTCATT  299
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGATATGAGAGAGAAAAGGAAGCAAATAAATAGATGTGTGTGAACTCATT  299

seq1  GAGATCCCAGTGGTTTGTTATTCCCATTCCTTTCTGTGGCTACTGCTACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCCCAGTGGTTTGTTATTCCCATTCCTTTCTGTGGCTACTGCTACA  349

seq1  ATGGGAGGTACTTTCACTGGGTGGGCTTAATAACAAAGATAACAGTAATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAGGTACTTTCACTGGGTGGGCTTAATAACAAAGATAACAGTAATA  399

seq1  ATAGCACTCATGGTAGTACAGATGCATAGAAGAGGACATCTTAAGTAACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCACTCATGGTAGTACAGATGCATAGAAGAGGACATCTTAAGTAACA  449

seq1  ACCAAAGTCATGTTTCAGAGTGAATACTTAAATAATTTTGCACTGTCTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGTCATGTTTCAGAGTGAATACTTAAATAATTTTGCACTGTCTCA  499

seq1  TTAATTCTGGTAAAGGACTAGAAGGGATAGCAACTGCTCCCTGAAAGTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCTGGTAAAGGACTAGAAGGGATAGCAACTGCTCCCTGAAAGTCC  549

seq1  ACTGGACTACTGACCCTGGAAGTCATCCATCTGGAAGATATTGAGGATGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGACTACTGACCCTGGAAGTCATCCATCTGGAAGATATTGAGGATGA  599

seq1  GGGAGAAGCACAGCAACCATATTGCTACAAATACAACAAATACTTCCTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAGCACAGCAACCATATTGCTACAAATACAACAAATACTTCCTTC  649

seq1  AAGCCTTCTCCACAAGAGATCTATACTCCTCTAGCAAGGGGGCCACCGAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTCTCCACAAGAGATCTATACTCCTCTAGCAAGGGGGCCACCGAT  699

seq1  GCTGAGAAAAGACAGACCTCATGCCATATTTCTCAGCTTGGGGACATGGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAAAAGACAGACCTCATGCCATATTTCTCAGCTTGGGGACATGGT  749

seq1  CCTTCAAATAAAGAGGACAGAAAACCAAAGAATGTCAGTTCCTAAAGAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAAATAAAGAGGACAGAAAACCAAAGAATGTCAGTTCCTAAAGAGG  799

seq1  GTTTAACAAGCTACTAATATAAACTGAGGTTCAAGTTCTTTCACAGGTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAACAAGCTACTAATATAAACTGAGGTTCAAGTTCTTTCACAGGTCT  849

seq1  ATCATGGTGCAACAGGATTTAAATTCAATAAATGTCTTTTAGGCATTTAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGTGCAACAGGATTTAAATTCAATAAATGTCTTTTAGGCATTTAC  899

seq1  TAGTTTGTGAAGCATCATGTAAATACTAACTAGTAGGG-AAAAAAACAGT  948
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TAGTTTGTGAAGCATCATGTAAATACTAACTAGTAGGGAAAAAAAACAGT  949

seq1  AACTTGTACAGGAAATATATTAATGAGGACCTACATTTAATGGCTACAAA  998
      |||||||||||||||||||||||||||   |||||||  |||||||| ||
seq2  AACTTGTACAGGAAATATATTAATGAG--ACTACATT--ATGGCTAC-AA  994

seq1  TAATAAAA--GCAAAATGAAAGGCTGGTTCTTAGTTGGGAAATGGGGACA  1046
      ||||||||   ||||||| || |||||||||||| |||  ||| | ||||
seq2  TAATAAAAAGCCAAAATG-AACGCTGGTTCTTAG-TGGCTAAT-GAGACA  1041

seq1  GAGCAGTGGAATAGCACAAGGAGGACTCTGCAT-GTGACATGGGTCTGGA  1095
      ||||||| | ||||||| || || ||||||||| ||||||| ||||| ||
seq2  GAGCAGTTGTATAGCAC-AGTAGAACTCTGCATGGTGACAT-GGTCT-GA  1088

seq1  TAAATTTGTAGA  1107
      |||| |||||||
seq2  TAAAGTTGTAGA  1100