BAC Information

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BAC

Clone NameB6Ng01-322G14
Chromosome5 (Build37)
Map Location 125,319,727 - 125,472,795
singlet/doubletdoublet
Overlap geneCcdc92, Zfp664
Upstream geneGpr81, Denr, Ccdc62, Hip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1, Sbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2, Atp6v0a2, Dnahc10
Downstream gene3110032G18Rik, Ncor2, Scarb1, Ubc, Dhx37, Bri3bp, Aacs, Tmem132b, EG231736, LOC100039178
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322G14.bB6Ng01-322G14.g
ACCGA111258GA111259
length1,167330
definitionB6Ng01-322G14.b B6Ng01-322G14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,319,727 - 125,320,895)(125,472,470 - 125,472,795)
sequence
gaattctcttccttatcctccctgaatataccccagcagtactaggtcag
cgagcagccgcctcttgaactgcagactgcactgtggctgagtaccgcag
gcatctgctgctctagggcaaggctggcagctgtgtgcccagtgcttcca
tcatactgtgcagaacacggtcacttgcaggtgtgtgggtcaccaaggat
taatcatgtggccatatcagcatggggagtgggcctcgtgcagcagcgga
cccgactccacatcccgacagtggtctggtcagcagccatgagcctgcac
ccacctgtgcagtgctgctgcagccgccggatctcggcgtgcagcccctt
gagtgtgctggcgtgctcccgctggaggaagagcaggttcttctgtgcac
tgtgcagctggttctccaggtttgtggctgccatgctgacatccaggtga
cctaccggaaacataagactctggtcactgtttcaagcacgagggttgag
agaagatgggctctgggtacacatcatggaaatatgtgggagcagatgag
gtcctggggctccaggaaccccttctgactgctggggcacaggcccttaa
ctcatctctcacagagcacctgccacacatcagctctatgtgaggaccag
ctgagggcaggagtggcacccagtacagggcgccaggctgctgcttgttc
tggagaggaagcaggtctgaggcggatgaagagtcagcagcatagagcag
ggtttcttcaaactcagaaccctcaagtctaggtgctaccttcccagatg
tcctgacttatgtgactggccctaccctcaatttcaactggagcaatatg
aagtcaggccagctttctagaataattcaagacacctgccccagcactga
gaaacacttaggacagaatgcagaccagtctatgcagctctcagtgtctt
tcccatgggccatgctagagagcactccctgcagaagccccatggctcag
ggctgccagcatgccgatgacatctgctcagtgtgtgcttgtggtggcga
caagcacagccgctgctcccacttcaggagtttgtgttcaccacttagga
ctgtccccacaaggacttcagacgtgcttcacttcacaccatcaggctta
gcagtcggtccacccag
tctcttccctgaccttccttgttaggatggtgggtcccgtcacaaccttg
agttctgcccgaatactctagtgctcttgggtcttctccactgtgtgtgt
ctctgtgagtggtgtatcacagaggccctgtggaagccagtcagcatccg
ctgaatgcaaaggacagagcccagtggccagtctacacaggttgtcattg
gttatgccaatccaacccctctgggcgatttaggagaatagttataaaac
cttcttgcagttctctttctagttccttccagcctcagtgtgtgtgtgtg
tgtgtgtgtgtccgtatgtctatgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_125319727_125320895
seq2: B6Ng01-322G14.b_48_1214

seq1  GAATTCTCTTCCTTATCCTCCCTGAATATACCCCAGCAGTACTAGGTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCCTTATCCTCCCTGAATATACCCCAGCAGTACTAGGTCAG  50

seq1  CGAGCAGCCGCCTCTTGAACTGCAGACTGCACTGTGGCTGAGTACCGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCAGCCGCCTCTTGAACTGCAGACTGCACTGTGGCTGAGTACCGCAG  100

seq1  GCATCTGCTGCTCTAGGGCAAGGCTGGCAGCTGTGTGCCCAGTGCTTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGCTGCTCTAGGGCAAGGCTGGCAGCTGTGTGCCCAGTGCTTCCA  150

seq1  TCATACTGTGCAGAACACGGTCACTTGCAGGTGTGTGGGTCACCAAGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACTGTGCAGAACACGGTCACTTGCAGGTGTGTGGGTCACCAAGGAT  200

seq1  TAATCATGTGGCCATATCAGCATGGGGAGTGGGCCTCGTGCAGCAGCGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATGTGGCCATATCAGCATGGGGAGTGGGCCTCGTGCAGCAGCGGA  250

seq1  CCCGACTCCACATCCCGACAGTGGTCTGGTCAGCAGCCATGAGCCTGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGACTCCACATCCCGACAGTGGTCTGGTCAGCAGCCATGAGCCTGCAC  300

seq1  CCACCTGTGCAGTGCTGCTGCAGCCGCCGGATCTCGGCGTGCAGCCCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGTGCAGTGCTGCTGCAGCCGCCGGATCTCGGCGTGCAGCCCCTT  350

seq1  GAGTGTGCTGGCGTGCTCCCGCTGGAGGAAGAGCAGGTTCTTCTGTGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGCTGGCGTGCTCCCGCTGGAGGAAGAGCAGGTTCTTCTGTGCAC  400

seq1  TGTGCAGCTGGTTCTCCAGGTTTGTGGCTGCCATGCTGACATCCAGGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGCTGGTTCTCCAGGTTTGTGGCTGCCATGCTGACATCCAGGTGA  450

seq1  CCTACCGGAAACATAAGACTCTGGTCACTGTTTCAAGCACGAGGGTTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCGGAAACATAAGACTCTGGTCACTGTTTCAAGCACGAGGGTTGAG  500

seq1  AGAAGATGGGCTCTGGGTACACATCATGGAAATATGTGGGAGCAGATGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATGGGCTCTGGGTACACATCATGGAAATATGTGGGAGCAGATGAG  550

seq1  GTCCTGGGGCTCCAGGAACCCCTTCTGACTGCTGGGGCACAGGCCCTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGGGCTCCAGGAACCCCTTCTGACTGCTGGGGCACAGGCCCTTAA  600

seq1  CTCATCTCTCACAGAGCACCTGCCACACATCAGCTCTATGTGAGGACCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTCTCACAGAGCACCTGCCACACATCAGCTCTATGTGAGGACCAG  650

seq1  CTGAGGGCAGGAGTGGCACCCAGTACAGGGCGCCAGGCTGCTGCTTGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGCAGGAGTGGCACCCAGTACAGGGCGCCAGGCTGCTGCTTGTTC  700

seq1  TGGAGAGGAAGCAGGTCTGAGGCGGATGAAGAGTCAGCAGCATAGAGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGGAAGCAGGTCTGAGGCGGATGAAGAGTCAGCAGCATAGAGCAG  750

seq1  GGTTTCTTCAAACTCAGAACCCTCAAGTCTAGGTGCTACCTTCCCAGATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTTCAAACTCAGAACCCTCAAGTCTAGGTGCTACCTTCCCAGATG  800

seq1  TCCTGACTTATGTGACTGGCCCTACCCTCAATTTCAACTGGAGCAATATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACTTATGTGACTGGCCCTACCCTCAATTTCAACTGGAGCAATATG  850

seq1  AAGTCAGGCCAGCTTTCTAGAATAATTCAAGACACCTGCCCCAGCACTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGGCCAGCTTTCTAGAATAATTCAAGACACCTGCCCCAGCACTGA  900

seq1  GAAACACTTAGGACAGAATGCAGACCAGTCTATGCAGCTCTCAGTGTCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACTTAGGACAGAATGCAGACCAGTCTATGCAGCTCTCAGTGTCTT  950

seq1  TCCCAT-GGCCATGCTAGAGAGCACTCCCTGCAGAAGCCCCATGGCTCAA  999
      |||||| ||||||||||||||||||||||||||||||||||||||||| |
seq2  TCCCATGGGCCATGCTAGAGAGCACTCCCTGCAGAAGCCCCATGGCTC-A  999

seq1  GGGCTGCCAGCATGCCGATGACATCTGCTCAGTGTGTGCTTGTGGTGGCG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGCCAGCATGCCGATGACATCTGCTCAGTGTGTGCTTGTGGTGGCG  1049

seq1  AC-AGCACAGCCGCTGCTCCCACTTCAGGAG-TTGTGTTCACCACTAAGA  1097
      || |||||||||||||||||||||||||||| |||||||||||||| || 
seq2  ACAAGCACAGCCGCTGCTCCCACTTCAGGAGTTTGTGTTCACCACTTAGG  1099

seq1  ACTGTCCCCACAGGGACTTCAGACCGTGCCTTCAC-TCACACCATCA-GC  1145
      |||||||||||| |||||||||| |||| |||||| ||||||||||| ||
seq2  ACTGTCCCCACAAGGACTTCAGA-CGTG-CTTCACTTCACACCATCAGGC  1147

seq1  TTAGGCAGCCGGGGCTCCACCCAG  1169
      ||| |||| |||   |||||||||
seq2  TTA-GCAGTCGG---TCCACCCAG  1167

seq1: chr5_125472470_125472795
seq2: B6Ng01-322G14.g_68_403 (reverse)

seq1  CACACACA----------CACACACACACACACACACACACACTGAGGCT  40
      ||||||||           |||||||||||||||||||||||||||||||
seq2  CACACACATAGACATACGGACACACACACACACACACACACACTGAGGCT  50

seq1  GGAAGGAACTAGAAAGAGAACTGCAAGAAGGTTTTATAACTATTCTCCTA  90
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAACTAGAAAGAGAACTGCAAGAAGGTTTTATAACTATTCTCCTA  100

seq1  AATCGCCCAGAGGGGTTGGATTGGCATAACCAATGACAACCTGTGTAGAC  140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGCCCAGAGGGGTTGGATTGGCATAACCAATGACAACCTGTGTAGAC  150

seq1  TGGCCACTGGGCTCTGTCCTTTGCATTCAGCGGATGCTGACTGGCTTCCA  190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCACTGGGCTCTGTCCTTTGCATTCAGCGGATGCTGACTGGCTTCCA  200

seq1  CAGGGCCTCTGTGATACACCACTCACAGAGACACACACAGTGGAGAAGAC  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCTCTGTGATACACCACTCACAGAGACACACACAGTGGAGAAGAC  250

seq1  CCAAGAGCACTAGAGTATTCGGGCAGAACTCAAGGTTGTGACGGGACCCA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGCACTAGAGTATTCGGGCAGAACTCAAGGTTGTGACGGGACCCA  300

seq1  CCATCCTAACAAGGAAGGTCAGGGAAGAGAGAATTC  326
      ||||||||||||||||||||||||||||||||||||
seq2  CCATCCTAACAAGGAAGGTCAGGGAAGAGAGAATTC  336