BAC Information

Click to search

BAC

Clone NameB6Ng01-323D18
Chromosome5 (Build37)
Map Location 91,680,706 - 91,813,202
singlet/doubletdoublet
Overlap geneBtc
Upstream geneAnkrd17, Alb1, Afp, Afm, LOC100040105, LOC622307, Rassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1, Cxcl2, 1110019K23Rik, Epgn, Ereg, Areg
Downstream gene9130213B05Rik, EG665860, LOC665864, LOC100040506, Ppia-ps5_892.1, Rchy1, Thap6, Gm1045, Cdkl2, LOC100040574, G3bp2, Vdp, LOC100040605, U90926, Ppef2, Asahl, Sdad1, Cxcl9, Cxcl10, Cxcl11, LOC100040228
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323D18.bB6Ng01-323D18.g
ACCGA111869GA111870
length1,1271,168
definitionB6Ng01-323D18.b B6Ng01-323D18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,680,706 - 91,681,847)(91,812,033 - 91,813,202)
sequence
gaattccagaaattttattttttaaatataaaacatcaattgtttggaca
aaatcaaagcttttgaatcttcctagacaagccactgtgcagtggaaggc
tttcttagtagtattacacaaagaggatctgtcttgtggaagaaaaacaa
gtcaccatatgaacagttccttcgcagtggagaccttgacttcttagggg
catcaagtcttaataaatgtcactgtagatgttgtgcttccaggacacct
aagagatgatttataaacaattgattatggattatacttgaaaattggtg
ttactcatgctattgacaaagcatcattaatgccacacagatttcagtag
agctaatccaaaatttcctgtctcctgtattctcactgtgaattgatctc
tggagtattgtattttcttgttcctttttgttgttgttgttgttttaagt
cttgacacttttcggaatcaacactgaagagacaggggttgactttaatg
ctatggcctctgtcatgaccacttcacacacacacacaaaaaaatgtcaa
ctagagagagaaaaaaaatgattacctaggcaagagaagtaggctatgca
tacttgggaaaaaatacactctaaaattaaataactagaatttcctcatc
cccatatgttactatatcatgtcagctgaattccatatgcttttttttta
tgagcaatgcctaacacatccagaaattgctatcaatttcttggctcttt
gcatggacccttaaggaccatccaaggaacatctgcccagcagtaattaa
agcaaggcagctttgtatgggtttgtagaggaggctaacactcaactgca
ttttattgacctcctaggcagataatactatcatcctagttgcctgactt
acaatgaatatcataggttgggtttaagaaaaaagagtttctctccatca
ttaagacattgagcatgacccacatcttcaaatacattttttaacaggat
ggacctggcagagagcacatgaagtcactcaaaatgaaattacaaaaagt
catgtgactatgagtggaaaatgttgtttttttctgcacttgcatatcag
acaagagctctgagtggaagccgtgat
gaattctttgacagttaaagcttcatacaatacattttaaaaaggaatat
atatatatatcctgtctgcttagatgaaatacaaaagatgaagcaaaaga
gaacagaaacagagggaaaacatgtccatctagtcactgcttcctagcaa
cacaagaattttgtaggtgtgctttatggtaggcagaataaaacttcatt
atttattgtgacagcccagaagggctgacagactatccattactagaagt
gttgggactgagaacagtactcgtgtctgtcctttaaggaccatgctggg
tggtactttgcattaacatgaagaagataaggcttttaacatatctaata
cggtatgcttgaaggagtccccctacccacccacccaatatgcttagctt
gagaagagaaagctccacagggaatcttagtagccagatacaaatatttt
gtaatcttctttgggaaagagaggcttcagatatttttaggtggttctaa
agagaaagtgcaagaaaaatgagctacacagtcaaaggtgtttgtagcat
tatagcttcagacacaggtttgaatgagcgaatgaatgtgacccatagca
tccatggttggtcttgagatcggcctatcttacagcagacaggatccctc
cactgaaattttaaatatggcttcggtggatgctttgaaagaatggtttc
tgagtgcagagttggtaggatattaaaaaaccttcagaattcttggtaac
ttaatataagttgtgatattttttgattgggagttatattccttctacat
acctaccccaactttttatcatgatttctccagaacacaatgtattcttc
gtctctaaatacattggtaactttaatgatccatgcttcttaaaacttct
tggtttttcattaattttcataaaatcgattatgagatgggcagaaaaat
ctattatccaaagtttttcttttggaaatagaattgtcttcattagctcc
aagtcacatagtgaactattatgactctgggggacttgtcatgagtagtg
actcttaaaaagtacgtatgaagtcacagtaataagctcgaagcctgcat
tgtcagtgggtttccatttgaagggacttggtaaaattgcaagctgcacc
ttagattaaccttatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_91680706_91681847
seq2: B6Ng01-323D18.b_44_1170

seq1  GAATTCCAGAAATTTTATTTTTTAAATATAAAACATCAATTGTTTGGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAATTTTATTTTTTAAATATAAAACATCAATTGTTTGGACA  50

seq1  AAATCAAAGCTTTTGAATCTTCCTAGACAAGCCACTGTGCAGTGGAAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAAGCTTTTGAATCTTCCTAGACAAGCCACTGTGCAGTGGAAGGC  100

seq1  TTTCTTAGTAGTATTACACAAAGAGGATCTGTCTTGTGGAAGAAAAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAGTAGTATTACACAAAGAGGATCTGTCTTGTGGAAGAAAAACAA  150

seq1  GTCACCATATGAACAGTTCCTTCGCAGTGGAGACCTTGACTTCTTAGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCATATGAACAGTTCCTTCGCAGTGGAGACCTTGACTTCTTAGGGG  200

seq1  CATCAAGTCTTAATAAATGTCACTGTAGATGTTGTGCTTCCAGGACACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAGTCTTAATAAATGTCACTGTAGATGTTGTGCTTCCAGGACACCT  250

seq1  AAGAGATGATTTATAAACAATTGATTATGGATTATACTTGAAAATTGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATGATTTATAAACAATTGATTATGGATTATACTTGAAAATTGGTG  300

seq1  TTACTCATGCTATTGACAAAGCATCATTAATGCCACACAGATTTCAGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCATGCTATTGACAAAGCATCATTAATGCCACACAGATTTCAGTAG  350

seq1  AGCTAATCCAAAATTTCCTGTCTCCTGTATTCTCACTGTGAATTGATCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAATCCAAAATTTCCTGTCTCCTGTATTCTCACTGTGAATTGATCTC  400

seq1  TGGAGTATTGTATTTTCTTGTTCCTTTTTGTTGTTGTTGTTGTTTTAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTATTGTATTTTCTTGTTCCTTTTTGTTGTTGTTGTTGTTTTAAGT  450

seq1  CTTGACACTTTTCGGAATCAACACTGAAGAGACAGGGGTTGACTTTAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACACTTTTCGGAATCAACACTGAAGAGACAGGGGTTGACTTTAATG  500

seq1  CTATGGCCTCTGTCATGACCACTTCACACACACACACAAAAAAATGTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGCCTCTGTCATGACCACTTCACACACACACACAAAAAAATGTCAA  550

seq1  CTAGAGAGAGAAAAAAAATGATTACCTAGGCAAGAGAAGTAGGCTATGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAGAGAAAAAAAATGATTACCTAGGCAAGAGAAGTAGGCTATGCA  600

seq1  TACTTGGGAAAAAATACACTCTAAAATTAAATAACTAGAATTTCCTCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGGGAAAAAATACACTCTAAAATTAAATAACTAGAATTTCCTCATC  650

seq1  CCCATATGTTACTATATCATGTCAGCTGAATTCCATATGCTTTTTTTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATGTTACTATATCATGTCAGCTGAATTCCATATGCTTTTTTTTTA  700

seq1  TGAGCAATGCCTAACACATCCAGAAATTGCTATCAATTTCTTGGCTCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAATGCCTAACACATCCAGAAATTGCTATCAATTTCTTGGCTCTTT  750

seq1  GCATGGACCCTTAAGGACCATCCAAGGAACATCTGCCCAGCAGTAATTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGACCCTTAAGGACCATCCAAGGAACATCTGCCCAGCAGTAATTAA  800

seq1  AGCAAGGCAGCTTTGTATGGGTTTGTAGAGGAGGCTAACACTCAACTGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGCAGCTTTGTATGGGTTTGTAGAGGAGGCTAACACTCAACTGCA  850

seq1  TTTTATTGACCTCCTAGGCAGATAATACTATCATCCTAGTTGCCTGACTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTGACCTCCTAGGCAGATAATACTATCATCCTAGTTGCCTGACTT  900

seq1  ACAATGAATATCATAGGTTGGGTTTAAGAAAAAAGAGTTTCTCTCCATCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAATATCATAGGTTGGGTTTAAGAAAAAAGAGTTTCTCTCCATCA  950

seq1  TTAAGACATTGAGCATGAACCCACATCTTCAAATACA-TTTTTAACAGGA  999
      ||||||||||||||||| ||||||||||||||||||| ||||||||||||
seq2  TTAAGACATTGAGCATG-ACCCACATCTTCAAATACATTTTTTAACAGGA  999

seq1  TTGGGACCTGGCAGAGAGCACATGAAAGTCACTCAAAAATGGAAAATTAC  1049
      |  ||||||||||||||||||||| ||||||||| ||||||  |||||||
seq2  T--GGACCTGGCAGAGAGCACATG-AAGTCACTC-AAAATG--AAATTAC  1043

seq1  AAAAAGTCATGTGACTAATGAGTTGAAAAATGTTGTTTTTTCCCTGCCAC  1099
      |||||||||||||||| ||||| || |||||||||||||||  ||||   
seq2  AAAAAGTCATGTGACT-ATGAG-TGGAAAATGTTGTTTTTT-TCTGCACT  1090

seq1  TGCATAATCAGACAAGAGCTCTGAGGTGGGAAAAGGCCGTGAT  1142
      ||||| |||||||||||||||||| ||||    | ||||||||
seq2  TGCAT-ATCAGACAAGAGCTCTGA-GTGG----AAGCCGTGAT  1127

seq1: chr5_91812033_91813202
seq2: B6Ng01-323D18.g_64_1231 (reverse)

seq1  TATAT-AGTTTAATCTAAAGTGCAGCTTGCATTTTTTACCATGTCCCTT-  48
      ||||| || ||||||||| ||||||||||||  |||||||| ||||||| 
seq2  TATATAAGGTTAATCTAAGGTGCAGCTTGCA-ATTTTACCAAGTCCCTTC  49

seq1  TAATGTGAACCAACTGTACATGGCAGCCTTCGAGGCTAATACTGTGACTT  98
       ||||  |||| |||| |||  |||| |||||||  || |||||||||||
seq2  AAATGGAAACCCACTG-ACAATGCAGGCTTCGAGCTTATTACTGTGACTT  98

seq1  CATACGGTCTTTTAAAGAGTCACTACCTCATGACAAGGTCCCCAGAGTCA  148
      ||||||  ||||| ||||||||||| |||||||||||  |||||||||| 
seq2  CATACGTACTTTTTAAGAGTCACTA-CTCATGACAAGTCCCCCAGAGTC-  146

seq1  ATAATTAGTTCACTATGTGACTTGGAGCTAATGAAGACAATTTCTATTTT  198
      |||| ||||||||||||||||||||||||||||||||||| |||||||| 
seq2  ATAA-TAGTTCACTATGTGACTTGGAGCTAATGAAGACAA-TTCTATTTC  194

seq1  CCAAAG-AAAACTTTGGATAATAGATTTTTCTGCCCATCTCATAATCGAT  247
      | |||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAAAAACTTTGGATAATAGATTTTTCTGCCCATCTCATAATCGAT  244

seq1  TTTATGAAAATTAATGAAAAA-CAAGAAGTTTTAAGAAGCATGGATCATT  296
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTTATGAAAATTAATGAAAAACCAAGAAGTTTTAAGAAGCATGGATCATT  294

seq1  AAAGTTACCAATGTATTTAGAGACGAAGAATACATTGTGTTCTGGAGAAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTACCAATGTATTTAGAGACGAAGAATACATTGTGTTCTGGAGAAA  344

seq1  TCATGATAAAAAGTTGGGGTAGGTATGTAGAAGGAATATAACTCCCAATC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATAAAAAGTTGGGGTAGGTATGTAGAAGGAATATAACTCCCAATC  394

seq1  AAAAAATATCACAACTTATATTAAGTTACCAAGAATTCTGAAGGTTTTTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATATCACAACTTATATTAAGTTACCAAGAATTCTGAAGGTTTTTT  444

seq1  AATATCCTACCAACTCTGCACTCAGAAACCATTCTTTCAAAGCATCCACC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCTACCAACTCTGCACTCAGAAACCATTCTTTCAAAGCATCCACC  494

seq1  GAAGCCATATTTAAAATTTCAGTGGAGGGATCCTGTCTGCTGTAAGATAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCATATTTAAAATTTCAGTGGAGGGATCCTGTCTGCTGTAAGATAG  544

seq1  GCCGATCTCAAGACCAACCATGGATGCTATGGGTCACATTCATTCGCTCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGATCTCAAGACCAACCATGGATGCTATGGGTCACATTCATTCGCTCA  594

seq1  TTCAAACCTGTGTCTGAAGCTATAATGCTACAAACACCTTTGACTGTGTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACCTGTGTCTGAAGCTATAATGCTACAAACACCTTTGACTGTGTA  644

seq1  GCTCATTTTTCTTGCACTTTCTCTTTAGAACCACCTAAAAATATCTGAAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTTTTCTTGCACTTTCTCTTTAGAACCACCTAAAAATATCTGAAG  694

seq1  CCTCTCTTTCCCAAAGAAGATTACAAAATATTTGTATCTGGCTACTAAGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTTTCCCAAAGAAGATTACAAAATATTTGTATCTGGCTACTAAGA  744

seq1  TTCCCTGTGGAGCTTTCTCTTCTCAAGCTAAGCATATTGGGTGGGTGGGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGTGGAGCTTTCTCTTCTCAAGCTAAGCATATTGGGTGGGTGGGT  794

seq1  AGGGGGACTCCTTCAAGCATACCGTATTAGATATGTTAAAAGCCTTATCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGACTCCTTCAAGCATACCGTATTAGATATGTTAAAAGCCTTATCT  844

seq1  TCTTCATGTTAATGCAAAGTACCACCCAGCATGGTCCTTAAAGGACAGAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATGTTAATGCAAAGTACCACCCAGCATGGTCCTTAAAGGACAGAC  894

seq1  ACGAGTACTGTTCTCAGTCCCAACACTTCTAGTAATGGATAGTCTGTCAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGTACTGTTCTCAGTCCCAACACTTCTAGTAATGGATAGTCTGTCAG  944

seq1  CCCTTCTGGGCTGTCACAATAAATAATGAAGTTTTATTCTGCCTACCATA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTGGGCTGTCACAATAAATAATGAAGTTTTATTCTGCCTACCATA  994

seq1  AAGCACACCTACAAAATTCTTGTGTTGCTAGGAAGCAGTGACTAGATGGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACACCTACAAAATTCTTGTGTTGCTAGGAAGCAGTGACTAGATGGA  1044

seq1  CATGTTTTCCCTCTGTTTCTGTTCTCTTTTGCTTCATCTTTTGTATTTCA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTTCCCTCTGTTTCTGTTCTCTTTTGCTTCATCTTTTGTATTTCA  1094

seq1  TCTAAGCAGACAGGATATATATATATATTCCTTTTTAAAATGTATTGTAT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGCAGACAGGATATATATATATATTCCTTTTTAAAATGTATTGTAT  1144

seq1  GAAGCTTTAACTGTCAAAGAATTC  1170
      ||||||||||||||||||||||||
seq2  GAAGCTTTAACTGTCAAAGAATTC  1168