BAC Information

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BAC

Clone NameB6Ng01-327J22
Chromosome5 (Build37)
Map Location 91,857,965 - 92,025,080
singlet/doubletdoublet
Overlap gene9130213B05Rik
Upstream geneAlb1, Afp, Afm, LOC100040105, LOC622307, Rassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1, Cxcl2, 1110019K23Rik, Epgn, Ereg, Areg, Btc
Downstream geneEG665860, LOC665864, LOC100040506, Ppia-ps5_892.1, Rchy1, Thap6, Gm1045, Cdkl2, LOC100040574, G3bp2, Vdp, LOC100040605, U90926, Ppef2, Asahl, Sdad1, Cxcl9, Cxcl10, Cxcl11, LOC100040228, Art3, Nup54, Scarb2, Gm1381
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327J22.bB6Ng01-327J22.g
ACCGA115119GA115120
length9771,196
definitionB6Ng01-327J22.b B6Ng01-327J22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,857,965 - 91,858,922)(92,023,917 - 92,025,080)
sequence
gaattcattaccaggctcctgtgcctgaaggtcagcgagatttcaaatta
tatagcaagaaacaaaattcataaagagcctgaagtagtgatggaagatt
ttctgaaacagggtcaagatgtatctcggtgtatttcactggcaagatca
tgacacaccctgggttcttcacctccactttcctgattcttccagcaaaa
tgcatgtgtgtaacctgcggagatcagagtcctcagccctctcttttgga
gccccttctttatacacaaatataatctagagaggagtatccactatgca
ctgggacatagttcaaggctctaggcagatagtgaaaccagtctctgttc
tcggaatgtactacgtaattggagagcagaaaaataagtcaaagcttttg
taatgatcataaatagaaggatatcaaccatgagagagagagagagagag
agagagagagagagagagagagagagagagagagagagagagagaaactg
aaccatttgctcctgtggcactctctgcttctgacaagttgacagtcact
tgattctacatgcagtgcatagtttcaaaactgcagttttctttgatgca
gagagccatataaagatgttttgctgaaatggttcactgcccaaataagg
ggatacagtgcagggataagcatgttgtccatgatgagaatgacagagga
tgcccacatggggagaattttgaccaatcacaactaagaaaggcttatgg
ggagactctcagagactgtaatccccctgttgctctttatttaggcaatt
atcttttcttaaaatcattttcccttaatctaaaatgatgtttaaatgtt
tcttgtcaattcaaccagggccattagtgtgcccagatattcatgttagg
tcattattctggagtgtcactatgagatcattttttagatttagccacag
ctctttggaattggggaagaatattgt
gaattctggagggataaagggaagagaacatgcaggcaacggtgttaagg
gcccaaagggaaaggtggacaggaccacgcccacaggcatgaatgtagat
gatccctctatgagagatggatttcacgaaacccactctgctttagctga
cctagagtcgcgaacagagtgccaaggagatacagattccccaccccgct
gcaggcctgccctccacccgtcgccacctgactcttcactgtacggcagg
ctccacttgtcctggtttctggccacaggtaggatgggaggctgtttagc
agaggagagtgttgcactcaagggagaggctcttctgtcatggaggtggt
cttttcatagggcttagtaagttctggtttcagctcttttctgtctcagg
cctgacccccagtatgcctcctgtaccccagtcagggctctgtagtaggc
tccttcattccaactggaatgtttctttcattcttgctcccctcactgat
atgccccagccttttgaaataagattacatgtatagatataatatattat
acataatatgtatacatacattacatatattaatatatacaatgttattt
tatatacatattatatacatatgcaatgtattttattacatcaatagtaa
atataataaatatgttatttttattatataatatatacatattttatata
tctatatgttatataatagtctataatatctgtattataatatataatat
gttatattatatataaatattatactcatatttagaacataaataatata
gatttgatagacatatttattttattgctagtagactgtgtctaccaatt
catagttctcaaggaatttacttgcctgactggcctacaaggctcttcca
attagaagtcactgcttggctaattttagctttctcttttccgccctctc
tctggtacttattttctattcagagcacttgctttattttcatttaaaga
tgtttatcttctcgccgtaaaggagaaaagtggaattctttccccctctt
ttaaggaaaagtgttgaactattcctcctccttcatcagacttctttttt
aattttaaaattcttctgtaatgccatgggcaattccccaccttggaacc
agggtagactgaattctgagccttgacactcctgctttgtttctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_91857965_91858922
seq2: B6Ng01-327J22.b_47_1023

seq1  GAATTCATTACCAGGCTCCTGTGCCTGAAGGTCAGCGAGATTTCAAATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTACCAGGCTCCTGTGCCTGAAGGTCAGCGAGATTTCAAATTA  50

seq1  TATAGCAAGAAACAAAATTCATAAAGAGCCTGAAGTAGTGATGGAAGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCAAGAAACAAAATTCATAAAGAGCCTGAAGTAGTGATGGAAGATT  100

seq1  TTCTGAAACAGGGTCAAGATGTATCTCGGTGTATTTCACTGGCAAGATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAACAGGGTCAAGATGTATCTCGGTGTATTTCACTGGCAAGATCA  150

seq1  TGACACACCCTGGGTTCTTCACCTCCACTTTCCTGATTCTTCCAGCAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACACCCTGGGTTCTTCACCTCCACTTTCCTGATTCTTCCAGCAAAA  200

seq1  TGCATGTGTGTAACCTGCGGAGATCAGAGTCCTCAGCCCTCTCTTTTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTGTGTAACCTGCGGAGATCAGAGTCCTCAGCCCTCTCTTTTGGA  250

seq1  GCCCCTTCTTTATACACAAATATAATCTAGAGAGGAGTATCCACTATGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTTCTTTATACACAAATATAATCTAGAGAGGAGTATCCACTATGCA  300

seq1  CTGGGACATAGTTCAAGGCTCTAGGCAGATAGTGAAACCAGTCTCTGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACATAGTTCAAGGCTCTAGGCAGATAGTGAAACCAGTCTCTGTTC  350

seq1  TCGGAATGTACTACGTAATTGGAGAGCAGAAAAATAAGTCAAAGCTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAATGTACTACGTAATTGGAGAGCAGAAAAATAAGTCAAAGCTTTTG  400

seq1  TAATGATCATAAATAGAAGGATATCAACCATGAGAGAGAGAGAGAGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATCATAAATAGAAGGATATCAACCATGAGAGAGAGAGAGAGAGAG  450

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACTG  500

seq1  AACCATTTGCTCCTGTGGCACTCTCTGCTTCTGACAAGTTGACAGTCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTTGCTCCTGTGGCACTCTCTGCTTCTGACAAGTTGACAGTCACT  550

seq1  TGATTCTACATGCAGTGCATAGTTTCAAAACTGCAGTTTTCTTTGATGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTACATGCAGTGCATAGTTTCAAAACTGCAGTTTTCTTTGATGCA  600

seq1  GAGAGCCATATAAAGATGTTTTGCTGAAATGGTTCACTGCCCAAATAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCCATATAAAGATGTTTTGCTGAAATGGTTCACTGCCCAAATAAGG  650

seq1  GGATACAGTGCAGGGATAAGCATGTTGTCCATGATGAGAATGACAGAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACAGTGCAGGGATAAGCATGTTGTCCATGATGAGAATGACAGAGGA  700

seq1  TG-CCACATGGGGAGAA-TTTGACCAATCACAACTAAGAAAGGCTTATGG  748
      || |||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGCCCACATGGGGAGAATTTTGACCAATCACAACTAAGAAAGGCTTATGG  750

seq1  GGAGACTCTCAGGAGACTGTAAT-CCCCTGTTGCTCTTTATTTAGGCAAT  797
      ||||||||||| ||||||||||| ||||||||||||||||||||||||||
seq2  GGAGACTCTCA-GAGACTGTAATCCCCCTGTTGCTCTTTATTTAGGCAAT  799

seq1  TATC-TTTCTT-AAATCATTTTCCCTTAATCT-AAATGATGTTTAAATG-  843
      |||| |||||| |||||||||||||||||||| |||||||||||||||| 
seq2  TATCTTTTCTTAAAATCATTTTCCCTTAATCTAAAATGATGTTTAAATGT  849

seq1  TTCATGTCAATTCAA-CAGGGCCA-TAGTGTGCCCAGATATTCA-GTTAG  890
      ||| ||||||||||| |||||||| ||||||||||||||||||| |||||
seq2  TTCTTGTCAATTCAACCAGGGCCATTAGTGTGCCCAGATATTCATGTTAG  899

seq1  GT-ATTATTCT-GAGTGTAACTATGAGA-CA-TTTATAGA-TTAG-CACA  934
      || |||||||| |||||| ||||||||| || ||| |||| |||| ||||
seq2  GTCATTATTCTGGAGTGTCACTATGAGATCATTTTTTAGATTTAGCCACA  949

seq1  GCACTT--GAATTGGG--AGAATATTGT  958
      || |||  ||||||||  ||||||||||
seq2  GCTCTTTGGAATTGGGGAAGAATATTGT  977

seq1: chr5_92023917_92025080
seq2: B6Ng01-327J22.g_65_1260 (reverse)

seq1  AGAG-AACAAAGCAGGA--GTCTAGGCTCAGAAATCAGTCTACCTTGTTT  47
      |||| ||||||||||||  ||| |||||||||| |||||||||| || ||
seq2  AGAGAAACAAAGCAGGAGTGTCAAGGCTCAGAATTCAGTCTACCCTGGTT  50

seq1  C--AGGT-GGGAAT--GCCAT-GCA-TACAG-AGA--TTTAAAAT--AAA  85
      |  |||| ||||||   |||| ||| ||||| |||  ||||||||  |||
seq2  CCAAGGTGGGGAATTGCCCATGGCATTACAGAAGAATTTTAAAATTAAAA  100

seq1  AAG-AGTCTGATGAA-GAGGAGGAATAG-TCACAACTTTTCCTT-TAAGA  131
      ||| ||||||||||| |||||||||||| |||  ||||||||||  ||||
seq2  AAGAAGTCTGATGAAGGAGGAGGAATAGTTCAACACTTTTCCTTAAAAGA  150

seq1  GGGG--AAG-ATTCCACTTTTCCTCCTTTTACGGCGAG-AGATAAACATC  177
      ||||  ||| ||||||||||| |||| ||||||||||| |||||||||||
seq2  GGGGGAAAGAATTCCACTTTT-CTCC-TTTACGGCGAGAAGATAAACATC  198

seq1  TTTTAATGAAAAT-AAGCAAGTGCTCTGAATAGAAA--TAGTACCAGAGA  224
      ||| ||||||||| ||||||||||||||||||||||   |||||||||||
seq2  TTTAAATGAAAATAAAGCAAGTGCTCTGAATAGAAAATAAGTACCAGAGA  248

seq1  GAGGGCGG-AAAGAGAAAGCTAAAATTAGCCAAGCAGTGACTTCT-ATTG  272
      |||||||| |||||||||||||||||||||||||||||||||||| ||||
seq2  GAGGGCGGAAAAGAGAAAGCTAAAATTAGCCAAGCAGTGACTTCTAATTG  298

seq1  GAAGAGCC-TGTAGGCCAGTCAGGCAAGT-AATTCC-TGAGAACTATG-A  318
      |||||||| |||||||||||||||||||| |||||| ||||||||||| |
seq2  GAAGAGCCTTGTAGGCCAGTCAGGCAAGTAAATTCCTTGAGAACTATGAA  348

seq1  TTGGTAGACACAGTCTACTAGCAAT-AAATAAATATGTCTATCAAATCTA  367
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTGGTAGACACAGTCTACTAGCAATAAAATAAATATGTCTATCAAATCTA  398

seq1  TATTATTTATGTTCTAAATATGAGTATAATATTTATATATAATATAACAT  417
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTATGTTCTAAATATGAGTATAATATTTATATATAATATAACAT  448

seq1  ATTATATATTATAATACAGATATTATAGACTATTATATAACATATAGATA  467
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATATTATAATACAGATATTATAGACTATTATATAACATATAGATA  498

seq1  TAT-AAATATGTATATATTATATAATAAAAATAACATATTTATTATATTT  516
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATATGTATATATTATATAATAAAAATAACATATTTATTATATTT  548

seq1  ACTATTGATGTAATAAAATACATTGCATATGTATATAATATGTATATAAA  566
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTGATGTAATAAAATACATTGCATATGTATATAATATGTATATAAA  598

seq1  ATAACATTGTATATATTAATATATGTAATGTATGTATACATATTATGTAT  616
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATTGTATATATTAATATATGTAATGTATGTATACATATTATGTAT  648

seq1  AATATATTATATCTATACATGTAATCTTATTTCAAAAGGCTGGGGCATAT  666
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTATATCTATACATGTAATCTTATTTCAAAAGGCTGGGGCATAT  698

seq1  CAGTGAGGGGAGCAAGAATGAAAGAAACATTCCAGTTGGAATGAAGGAGC  716
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGGGGAGCAAGAATGAAAGAAACATTCCAGTTGGAATGAAGGAGC  748

seq1  CTACTACAGAGCCCTGACTGGGGTACAGGAGGCATACTGGGGGTCAGGCC  766
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTACAGAGCCCTGACTGGGGTACAGGAGGCATACTGGGGGTCAGGCC  798

seq1  TGAGACAGAAAAGAGCTGAAACCAGAACTTACTAAGCCCTATGAAAAGAC  816
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAGAAAAGAGCTGAAACCAGAACTTACTAAGCCCTATGAAAAGAC  848

seq1  CACCTCCATGACAGAAGAGCCTCTCCCTTGAGTGCAACACTCTCCTCTGC  866
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCATGACAGAAGAGCCTCTCCCTTGAGTGCAACACTCTCCTCTGC  898

seq1  TAAACAGCCTCCCATCCTACCTGTGGCCAGAAACCAGGACAAGTGGAGCC  916
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGCCTCCCATCCTACCTGTGGCCAGAAACCAGGACAAGTGGAGCC  948

seq1  TGCCGTACAGTGAAGAGTCAGGTGGCGACGGGTGGAGGGCAGGCCTGCAG  966
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGTACAGTGAAGAGTCAGGTGGCGACGGGTGGAGGGCAGGCCTGCAG  998

seq1  CGGGGTGGGGAATCTGTATCTCCTTGGCACTCTGTTCGCGACTCTAGGTC  1016
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGTGGGGAATCTGTATCTCCTTGGCACTCTGTTCGCGACTCTAGGTC  1048

seq1  AGCTAAAGCAGAGTGGGTTTCGTGAAATCCATCTCTCATAGAGGGATCAT  1066
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAAGCAGAGTGGGTTTCGTGAAATCCATCTCTCATAGAGGGATCAT  1098

seq1  CTACATTCATGCCTGTGGGCGTGGTCCTGTCCACCTTTCCCTTTGGGCCC  1116
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTCATGCCTGTGGGCGTGGTCCTGTCCACCTTTCCCTTTGGGCCC  1148

seq1  TTAACACCGTTGCCTGCATGTTCTCTTCCCTTTATCCCTCCAGAATTC  1164
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACCGTTGCCTGCATGTTCTCTTCCCTTTATCCCTCCAGAATTC  1196