BAC Information

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BAC

Clone NameB6Ng01-328N16
Chromosome9 (Build37)5 (Build37)
Map Location 82,276,213 - 82,276,71618,201,562 - 18,202,689
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039038, Htr1b, LOC671392, 4930486G11Rik, LOC100039085
Downstream geneIrak1bp1, Phip, LOC100039144, Hmgn3, LOC100039159
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328N16.bB6Ng01-328N16.g
ACCGA116002GA116003
length8481,129
definitionB6Ng01-328N16.b B6Ng01-328N16.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(82,276,213 - 82,276,716)(18,201,562 - 18,202,689)
sequence
gaattcttaggatcacttatgtatactatcatatcatctgcaaaaagtga
tattttgacttcttcctttccaatttgtatccccttgatctccttttgtt
gtctaattgctctggctaggacttcaagtactatgttgaataggtaagga
gaaaatgggcagccttgtctagtccatgattttagtgggattgcttccag
cttctcaccatttactttgatgttggctactggtttgctgtagattgctt
ttatcatgtttaggtatgggccttgaattcctgatctttccaagactttt
atcatgaatgggtgttggattttgtcaaatgttttctccgcatctaacaa
gatgatcatgtggttgttttttgtgtttgtgtttgtttatacagtggatt
actttgatggatttccaaatattagaccttccctgcatccctgtaataaa
acctacttggtcaggatggatgattgttttgatgtgttcttggattcagt
tagtgagaattttattgagtatttttgcatcgatattgataagggaaatt
ggtctgaagttctctatctttgttgggtctttctgtggtttagggatcag
agtaattgtggcttcatagaatgagttgggtagagtaccttctgcttcta
ctttgtggaatagtttgtgaagaattagaattagatcttctttgaagacc
ttatagaacactgcactaaacccatgctgtcctgggcttttttttttttt
ttttttttttttttttttttgggtggggagattattaatgactgcttcta
tttctttaggggatataggactgtttagatcattaatctgatcctgat

gaattcagtagtttttttctcaatggtctccttagattttggctgctttt
cttgggatattaaattgttaaagactgagttttaaacttcctctttgttt
tcaccataaatcaggacagaggaaaggaataatgagttcataaaaaggat
ttttgtttgatttaacaaatacaagtaatgggtgatatggcccaaagtct
taaactgttggtagaatcagtatcagatatatgactctttcaaatcaatt
aaaaaatttgttatttattttaataacatttaatattttgcatatgtgat
gttaaaatgagtcatctaaatgaaatagcatataagtaaataataagttt
tgaactgttgggtactttttaatgtttctaccagaaattgtttaaattca
aatgacatatttatggtggacagagtgagtattctttgccatataaaaga
aatatcattgttctctttaagaatcttttaacataatatttgaaaatatg
tttaaaatactgtgtggaattttaaggattgagtaataatattgaaaaat
gatatagtagagagccttagcagacccatgaggcagattctcctttccat
acagcaaatggtaagttccattttttcatcactgggacttgggataacag
ccactggtatataaatttatgactgccaacagtgacattttttcaataag
catttgtcaataaaaattaaggcatttagaaaactaaaaattatttcata
ttttaaatgtttcaatgttatatttggctgtaaaggaaatgccccatagg
gcaatacttagtagggtttatatataagcataattctctcaaccaaaact
ctattaacattttccttacatttagtatacatacacagtttgcaaaatat
caattaaaataaaactatcaagctagcatgtttctggcgttctctgggac
catggtagaagtgcattatatcaacctgcatattctggatagaaaataga
aagtgaaagctctgtatgatagaatttcaagtctctgaagaaggaaattg
agagatctcagaagaatgaaagaatcctcccaatgcatgctccatggatt
cgcaggataatattagtaaaattgctatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_82276213_82276716
seq2: B6Ng01-328N16.b_373_896 (reverse)

seq1  ATCAGGATCAGATTAATGATCTAAACAGTCCTATATCCCCTAAAGAAAT-  49
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATCAGGATCAGATTAATGATCTAAACAGTCCTATATCCCCTAAAGAAATA  50

seq1  --AGCAGTCATTAATAGTCTCCCAACC-------------AAAAAAAAAA  84
        |||||||||||||| |||||| |||             ||||||||||
seq2  GAAGCAGTCATTAATAATCTCCCCACCCAAAAAAAAAAAAAAAAAAAAAA  100

seq1  AAAAAAAAAAAGCCCAGGGCCAGATGGATTTAGTGCAGAGTTCTATCAGA  134
      |||||||||||||||||| |   |||| |||||||||| ||||||| || 
seq2  AAAAAAAAAAAGCCCAGGACAGCATGGGTTTAGTGCAGTGTTCTATAAGG  150

seq1  CCTTCTAAAAAGATCTAATTCCAGTTCTTCACAAACTATTCCACAAAATA  184
       |||| || |||||||||||| | ||||||||||||||||||||||| ||
seq2  TCTTCAAAGAAGATCTAATTCTAATTCTTCACAAACTATTCCACAAAGTA  200

seq1  GAAGCAGAAGGTATTCTATCCAATTCATTCTATGAAGCCACAATTACTCT  234
      ||||||||||||| |||| |||| ||||||||||||||||||||||||||
seq2  GAAGCAGAAGGTACTCTACCCAACTCATTCTATGAAGCCACAATTACTCT  250

seq1  GATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAA  284
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAA  300

seq1  TTTCCATTATGAATATCAATGCAAAAATACTCAATAAAATTCTCACTAAC  334
      ||||| |||| |||||| ||||||||||||||||||||||||||||||||
seq2  TTTCCCTTATCAATATCGATGCAAAAATACTCAATAAAATTCTCACTAAC  350

seq1  TGAATCCAAGAACACATCAAAACAATCATCCATCCTGACCAAGTAGGTTT  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCCAAGAACACATCAAAACAATCATCCATCCTGACCAAGTAGGTTT  400

seq1  CATTCCAGGGATGTAGGGATGGTTTAATATATGGAAATCCATCAACGTAA  434
       ||| |||||||| ||||| ||| |||||| |||||||||||||| ||||
seq2  TATTACAGGGATGCAGGGAAGGTCTAATATTTGGAAATCCATCAAAGTAA  450

seq1  TTCACTATATAAATAAACTCAAAGACAAAAAA----CACCTGATCATTTT  480
      | |||| |||||| |||| |||| ||||||||    ||| ||||||| ||
seq2  TCCACTGTATAAACAAACACAAACACAAAAAACAACCACATGATCATCTT  500

seq1  GTTAGATGTGGAGAAAGCATTTGA  504
      |||||||| ||||||| |||||||
seq2  GTTAGATGCGGAGAAAACATTTGA  524


seq1: chr5_18201562_18202689
seq2: B6Ng01-328N16.g_69_1197

seq1  GAATTCAGTAGTTTTTTTCTCAATGGTCTCCTTAGATTTTGGCTGCTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAGTTTTTTTCTCAATGGTCTCCTTAGATTTTGGCTGCTTTT  50

seq1  CTTGGGATATTAAATTGTTAAAGACTGAGTTTTAAACTTCCTCTTTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGATATTAAATTGTTAAAGACTGAGTTTTAAACTTCCTCTTTGTTT  100

seq1  TCACCATAAATCAGGACAGAGGAAAGGAATAATGAGTTCATAAAAAGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATAAATCAGGACAGAGGAAAGGAATAATGAGTTCATAAAAAGGAT  150

seq1  TTTTGTTTGATTTAACAAATACAAGTAATGGGTGATATGGCCCAAAGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTGATTTAACAAATACAAGTAATGGGTGATATGGCCCAAAGTCT  200

seq1  TAAACTGTTGGTAGAATCAGTATCAGATATATGACTCTTTCAAATCAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTGTTGGTAGAATCAGTATCAGATATATGACTCTTTCAAATCAATT  250

seq1  AAAAAATTTGTTATTTATTTTAATAACATTTAATATTTTGCATATGTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTTGTTATTTATTTTAATAACATTTAATATTTTGCATATGTGAT  300

seq1  GTTAAAATGAGTCATCTAAATGAAATAGCATATAAGTAAATAATAAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAATGAGTCATCTAAATGAAATAGCATATAAGTAAATAATAAGTTT  350

seq1  TGAACTGTTGGGTACTTTTTAATGTTTCTACCAGAAATTGTTTAAATTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTGTTGGGTACTTTTTAATGTTTCTACCAGAAATTGTTTAAATTCA  400

seq1  AATGACATATTTATGGTGGACAGAGTGAGTATTCTTTGCCATATAAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACATATTTATGGTGGACAGAGTGAGTATTCTTTGCCATATAAAAGA  450

seq1  AATATCATTGTTCTCTTTAAGAATCTTTTAACATAATATTTGAAAATATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCATTGTTCTCTTTAAGAATCTTTTAACATAATATTTGAAAATATG  500

seq1  TTTAAAATACTGTGTGGAATTTTAAGGATTGAGTAATAATATTGAAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATACTGTGTGGAATTTTAAGGATTGAGTAATAATATTGAAAAAT  550

seq1  GATATAGTAGAGAGCCTTAGCAGACCCATGAGGCAGATTCTCCTTTCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAGTAGAGAGCCTTAGCAGACCCATGAGGCAGATTCTCCTTTCCAT  600

seq1  ACAGCAAATGGTAAGTTCCATTTTTTCATCACTGGGACTTGGGATAACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAATGGTAAGTTCCATTTTTTCATCACTGGGACTTGGGATAACAG  650

seq1  CCACTGGTATATAAATTTATGACTGCCAACAGTGACATTTTTTCAATAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGTATATAAATTTATGACTGCCAACAGTGACATTTTTTCAATAAG  700

seq1  CATTTGTCAATAAAAATTAAGGCATTTAGAAAACTAAAAATTATTTCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTCAATAAAAATTAAGGCATTTAGAAAACTAAAAATTATTTCATA  750

seq1  TTTTAAATGTTTCAATGTTATATTTGGCTGTAAAGGAAATGCCCCATAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATGTTTCAATGTTATATTTGGCTGTAAAGGAAATGCCCCATAGG  800

seq1  GCAATACTTAGTAGGGTTTATATATAAGCATAATTCTCTCAACCAAAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATACTTAGTAGGGTTTATATATAAGCATAATTCTCTCAACCAAAACT  850

seq1  CTATTAACATTTTCCTTACATTTAGTATACATACACAGTTTGCAAAATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAACATTTTCCTTACATTTAGTATACATACACAGTTTGCAAAATAT  900

seq1  CAATTAAAATAAAACTATCAAGCTAGCATGTTTCTGGCGTTCTCT-GGAC  949
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CAATTAAAATAAAACTATCAAGCTAGCATGTTTCTGGCGTTCTCTGGGAC  950

seq1  CATGGTAGAAGTGCATTATATCAACCTGCATATTCTGGATAGAAAATAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTAGAAGTGCATTATATCAACCTGCATATTCTGGATAGAAAATAGA  1000

seq1  AAGTGAAAGCTCTGTATGATAAGAATTTCAAGTCTCTGAAGAAAGAAATT  1049
      |||||||||||||||||||| |||||||||||||||||||||| ||||||
seq2  AAGTGAAAGCTCTGTATGAT-AGAATTTCAAGTCTCTGAAGAAGGAAATT  1049

seq1  GAAGAAGATCTCAGAAGATGGAAAGA--TCTCCC-ATGCATGCT-CATGG  1095
      ||   |||||||||||||  ||||||   ||||| ||||||||| |||||
seq2  GA--GAGATCTCAGAAGAATGAAAGAATCCTCCCAATGCATGCTCCATGG  1097

seq1  ATTCGCAGGATTAATA-TAGTAAAAATGGCTATC  1128
      |||||||||| ||||| |||| ||||| ||||||
seq2  ATTCGCAGGA-TAATATTAGT-AAAATTGCTATC  1129


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