BAC Information

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BAC

Clone NameB6Ng01-328O20
Chromosome5 (Build37)
Map Location 5,779,961 - 5,781,160
singlet/doubletsinglet
Overlap genenone
Upstream genePftk1, 1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1
Downstream geneLOC727711, LOC546854, LOC100041208, EG435830
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328O20.bB6Ng01-328O20.g
ACCGA116050GA116051
length1,1811,021
definitionB6Ng01-328O20.b B6Ng01-328O20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcaggtttccttgtttatctcttcactcccatactcctcacct
taagtggcttagttggaggatgaaacccgtatattgatatctttccatct
ttgggaggcaatggtcaaacataatttagtacatctataagatagacatg
gtcttataaaaaagttagctctttgctttgcaattcagaggaattgccaa
tacaacatgttaaagagaaatcaaattggaacaacatttaatgtggtaaa
aataaagtttattttggaatgatcataattggcgaaagagaactcaggac
agagctggcctaggttccaaatataatgtaatgtaatataatataatata
atataatataatataatataatataataatatagacaggtgtggatttgt
catcgaggccaaagtagggctccatgcttgggaattactaaaaggacaga
agggtacaaagggcagtctggccacctgacttcatagggtgcttgctgca
gagaggccagaatgaccaggcacagaagcaggaagaagaacagaaagaaa
cggtggggatcctttagaaactgagttagttggattcttactagaactta
gtaggaaaggctaacaagatgggtacaatgacaaatcctagttgagagaa
gggctttgatcagcctggcaaaagtttggctaagggaaagaatgtttgtc
aattattaaatgtaagttaaatgattaagtatgaagatatacacatcctg
cactgaggattagatacatgcacgttctttgtagagaaatggtaggaccc
ttacactgccccagaggtcactgataatcttgatgaacattagtcatggt
tctcaagggtaacagaagttttagaaattatctctttttatatatagaaa
tgggatttattagaatgacttccaggctgtgatccagctaatccaaaatg
actatccatgaatgaaaaatctaagaattaagtagttactcagtcttaga
gttggatgtctgagctggtcttcagcatatttctggagttccaaagaatt
atgcctctaagcgagagagccgacttgctagccagggtgaacagcaacag
caaagagcaaagctcctagtcatgtcctggctcagtaggccagacgacta
tgggaagtccttctcacttaagaattgggat

gaattccacacaccactctcaccaatggacagattctggaaacacaaact
aaacagagactcatggacactgacagaagttatgaatcaaatggatttaa
taaatatctacagaatatttatcctaaaacaaaaggatataccttcttct
cagagccacatggtacctcctccaaaattgaccatataattggtcacaaa
acaggcctccagagatacaaaaatattgaaatattcccatacatcctatc
taatcaccacagactaaggctgatcttcaataacaacataaataatagaa
agccaacatgcatgtggaaactgaacaacacactactcaatgattctttg
gtcaaggatgaaataaagaaagagattaaagactttttagagtttaatga
aaatgaagccacaacatagccaaatttatgagatacaatgaaggcagtcc
taagaagaaaactcatagccctgagtgcctccaaaaagaaactagaggga
acatacactaccagcctaacagcatacctagaagctttagaactaaagga
agcaaattcactcaagaggatgagactgcaggaaataatcaatctcaggg
ctaaaataaaacaagtggaaataaaaggaactattcaaagaatcaaccaa
accaggagctggttctttgaaaaaaatcaacaagatagattaacccttag
ccagactaactagagggaacagggacagtatcctaattaacaaaatcaaa
aatgaaaaaggagacataacaacagaacctgaggaaatacaaaacatcat
cagatcctactacaaaaggctatactcaacaaaactagaaaatctggatg
aaatggacaacttcctagacaaataccaggtaccaaagttaaattaggat
aagattaacgatataaacagtcccatttcccctaaagaattagaagcagt
catcaatagtctcccaaccaaaagagcccaggaccagatagtttagtgca
gagttctatcagacgttcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_5779961_5781160
seq2: B6Ng01-328O20.b_45_1225

seq1  GAATTCTTCAGGTTTCCTTGTTTATCTCTTCACTCCCATACTCCTCACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGGTTTCCTTGTTTATCTCTTCACTCCCATACTCCTCACCT  50

seq1  TAAGTGGCTTAGTTGGAGGATGAAACCCGTATATTGATATCTTTCCATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGGCTTAGTTGGAGGATGAAACCCGTATATTGATATCTTTCCATCT  100

seq1  TTGGGAGGCAATGGTCAAACATAATTTAGTACATCTATAAGATAGACATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGGCAATGGTCAAACATAATTTAGTACATCTATAAGATAGACATG  150

seq1  GTCTTATAAAAAAGTTAGCTCTTTGCTTTGCAATTCAGAGGAATTGCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATAAAAAAGTTAGCTCTTTGCTTTGCAATTCAGAGGAATTGCCAA  200

seq1  TACAACATGTTAAAGAGAAATCAAATTGGAACAACATTTAATGTGGTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACATGTTAAAGAGAAATCAAATTGGAACAACATTTAATGTGGTAAA  250

seq1  AATAAAGTTTATTTTGGAATGATCATAATTGGCGAAAGAGAACTCAGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGTTTATTTTGGAATGATCATAATTGGCGAAAGAGAACTCAGGAC  300

seq1  AGAGCTGGCCTAGGTTCCAAATATAATGTAATGTAATATAATATAATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGGCCTAGGTTCCAAATATAATGTAATGTAATATAATATAATATA  350

seq1  ATATAATATAATATAATATAATATAATAATATAGACAGGTGTGGATTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATATAATATAATATAATATAATAATATAGACAGGTGTGGATTTGT  400

seq1  CATCGAGGCCAAAGTAGGGCTCCATGCTTGGGAATTACTAAAAGGACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGAGGCCAAAGTAGGGCTCCATGCTTGGGAATTACTAAAAGGACAGA  450

seq1  AGGGTACAAAGGGCAGTCTGGCCACCTGACTTCATAGGGTGCTTGCTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTACAAAGGGCAGTCTGGCCACCTGACTTCATAGGGTGCTTGCTGCA  500

seq1  GAGAGGCCAGAATGACCAGGCACAGAAGCAGGAAGAAGAACAGAAAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCCAGAATGACCAGGCACAGAAGCAGGAAGAAGAACAGAAAGAAA  550

seq1  CGGTGGGGATCCTTTAGAAACTGAGTTAGTTGGATTCTTACTAGAACTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGGGGATCCTTTAGAAACTGAGTTAGTTGGATTCTTACTAGAACTTA  600

seq1  GTAGGAAAGGCTAACAAGATGGGTACAATGACAAATCCTAGTTGAGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAAAGGCTAACAAGATGGGTACAATGACAAATCCTAGTTGAGAGAA  650

seq1  GGGCTTTGATCAGCCTGGCAAAAGTTTGGCTAAGGGAAAGAATGTTTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTTGATCAGCCTGGCAAAAGTTTGGCTAAGGGAAAGAATGTTTGTC  700

seq1  AATTATTAAATGTAAGTTAAATGATTAAGTATGAAGATATACACATCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTAAATGTAAGTTAAATGATTAAGTATGAAGATATACACATCCTG  750

seq1  CACTGAGGATTAGATACATGCACGTTCTTTGTAGAGAAATGGTAGGACCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGGATTAGATACATGCACGTTCTTTGTAGAGAAATGGTAGGACCC  800

seq1  TTACACTGCCCCAGAGGTCACTGATAATCTTGATGAACATTAGTCATGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTGCCCCAGAGGTCACTGATAATCTTGATGAACATTAGTCATGGT  850

seq1  TCTCAAGGGTAACAGAAGTTTTAGAAATTATCTCTTTTTATATATAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGGGTAACAGAAGTTTTAGAAATTATCTCTTTTTATATATAGAAA  900

seq1  TGGGATTTATTAGAATGACTTCCAGGCTGTGATCCAGCTAATCCAAAATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTTATTAGAATGACTTCCAGGCTGTGATCCAGCTAATCCAAAATG  950

seq1  ACTATCCATGAATGAAAAAATCTAAGAATTAAGTAGTTACTCAGTCTTAG  1000
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACTATCCATGAATG-AAAAATCTAAGAATTAAGTAGTTACTCAGTCTTAG  999

seq1  AGGTTGGATGTCTGAGCTGGTCTTCAGCATA-TTCTGGAGTTCCAAAGAA  1049
      | ||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  A-GTTGGATGTCTGAGCTGGTCTTCAGCATATTTCTGGAGTTCCAAAGAA  1048

seq1  TTATG-CTCTAAAGCGAGAGAAGGAAGGGACTTGCTAGCAAGGTGAAACA  1098
      ||||| |||| ||||||||    ||   ||||||||||| |||   ||||
seq2  TTATGCCTCT-AAGCGAGA----GAGCCGACTTGCTAGCCAGGGTGAACA  1093

seq1  GGCAAACAGGCAAAGAGCAAAAGCTTCCTTAGTCCATGTCCTTGGGCTTC  1148
      |   |||| ||||||||| ||||||  | |||| ||||||||  ||||  
seq2  G--CAACA-GCAAAGAGC-AAAGCT--CCTAGT-CATGTCCT--GGCT--  1132

seq1  CAGTAGGCAAGACCCAGACTAAAGGGGAGT-CTTCTCACTTTAAGATTGG  1197
      |||||||| ||||   |||| | ||| ||| |||||||||| |  |||||
seq2  CAGTAGGCCAGAC---GACT-ATGGGAAGTCCTTCTCACTTAAGAATTGG  1178

seq1  GAT  1200
      |||
seq2  GAT  1181


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