BAC Information

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BAC

Clone NameB6Ng01-331J20
Chromosome5 (Build37)
Map Location 14,996,189 - 15,028,711
singlet/doubletdoublet
Overlap genenone
Upstream geneSema3e, LOC100042957, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1
Downstream geneSpeer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331J20.bB6Ng01-331J20.g
ACCGA117933GA117934
length1,190994
definitionB6Ng01-331J20.b B6Ng01-331J20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,027,525 - 15,028,711)(14,996,189 - 14,997,194)
sequence
gaattctcttacttctaacatatagtactctgtaacacacatccattcat
gatcctgtggaccagatactgagtaatataccgtcattactctaaagctg
ccaaggaaataaaaatattcacaaaggattataaaataaatgaggaaggc
cagagccatatgcctcagttttacttgcaatacagcatcagtgacaacca
cacagcagatataatgaccttccaagtcctactgggaaatagcttttgat
agatgctgttgtccttgaccataaacttgctgtgcttttgctgttgctga
ttagacttatgtttaacatttatgtgaatgggtgtttttcctactgaatg
taatactgtatgtggctcctcccgagagacatttccctcagaggacagaa
ggaatcacaaccattcctggagatgattgttaggcaccatgtgggtcttc
tagagagtagcagatatctaacctgtgaggcatcctcacacctcctgcag
ttggcttttgtcctttcagtgcatttcctgcattagatggacaggatcaa
gtccagttgagtggagaaatctcaggagatgtctaggtacagtgcctgac
ctgcacatactcattgtcctaggctgccaggcatgtatgcagggctctga
tattaccactgctagttttgtgttcaggatattgcctcagtatcttttat
tttcaattttagagcagatcttcacctctcatataggatgacaatgtaga
ttgggtacttttgtaaaatttagaattgagattagcttcctagaagcttg
attgggaaaaagaaccctcttgatagcatgaaatgtttctattgtttctt
tttaagtcagatatgtttttatttagatttcaagtgctatccgctttcct
ggtttcccctctgaaaacgccctatctccttccctttccccctgctcacc
aaccattccactgtggcttcctagcctgggcattcccctacacagggtca
aggcctttcctcccattgatgaacaacaaagccatcatctactacatatt
gcagctggagcatgagttccactgttactctagtgttgtgtagtttctgg
agctctgggggttactggcctagtcataatgctgtcctttctaatgggac
tgcatcaatggtcagctaccttgagtccgtttttctagct
gaattcacatcttatttccataaaacatatatgctgtagcatacatacat
acatacatacatacacacatacacacatacacacatacacacatacacac
atacacacatacacacatacacacatacacacatacacacatacacacat
acacacatacacacatactcacatacaattggtttgtttagttttggatg
ggtttgaggtgtggttgttgttggtttgtttttgaaacagagtctgtcta
tgtagccctggctgtcatggaatttgctttgtagatcaggctggcctcaa
attcagagattcaccttcttctgtcttctgagaactagtagtcaagtctc
cacgcccagcagtttgaattgttggattaaagattttggacatttgtcta
ctttatcttttctattaagatagaaagaagatagcctattattcaaattt
actcagaaaattattttatagtcagtcatggctggaatgcagatataaaa
aaattcaaattgtttgaaactgaaaattaaaagattaaaaagtttaagaa
actctttaaaaatttcccttttcaaaaactggctggccattcatatagct
catgaatcttaaggtttaacagtataaatgaatagcctcagcttatttca
gtttgtcttaaatttaatttaggtttaatcatgtgtctatagacctgtac
ttttatcatcgtgttattttccttatagcttaactgttaacattaataga
cctcaaaaaataatacatttaaatccgatgagcacaagatgctcagtatt
gttagcaaacgtcttgctttgtcactgtagcttctaggccccaagtacag
ctcattctgaggatttctgttacgccgaatggacttaggaattgtctgct
catctgggtctacacgtcacagagaatccagtgactgaaaaggaaagaaa
gaaacagatggtatcatgtcttgatgagcgtgagccactagagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15027525_15028711
seq2: B6Ng01-331J20.b_48_1237 (reverse)

seq1  AGCTAGAAAAAC-GACCCAAGG-AGCTGA-CATTGTTTGCAGCCCCA-TA  46
      |||||||||||| ||| ||||| |||||| |||||  ||||| |||| ||
seq2  AGCTAGAAAAACGGACTCAAGGTAGCTGACCATTG-ATGCAGTCCCATTA  49

seq1  GAAGGAACAGCAATATGAACTA-GCCAGT-ACCCCCAGAGCTCCCAGAAA  94
      ||| | |||||| |||| |||| |||||| |||||||||||| |||||||
seq2  GAAAGGACAGCATTATG-ACTAGGCCAGTAACCCCCAGAGCT-CCAGAAA  97

seq1  CTACACCACCAACTAGAGT-ACAGTGGAACTCATGGCTCCAGCTGC-ATA  142
      |||||| ||  |||||||| |||||||||||||| ||||||||||| |||
seq2  CTACACAAC--ACTAGAGTAACAGTGGAACTCAT-GCTCCAGCTGCAATA  144

seq1  TGTAGTAGATGATGGCTTTGTTGTTCATCAATGGGAGGAAAGGCCTTGAC  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTAGATGATGGCTTTGTTGTTCATCAATGGGAGGAAAGGCCTTGAC  194

seq1  CCTGTGTAGGGGAATGCCCAGGCTAGGAAGCCAGAGTGGAATGGTTGGTG  242
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCTGTGTAGGGGAATGCCCAGGCTAGGAAGCCACAGTGGAATGGTTGGTG  244

seq1  AGCAGGGGGACAGGGGAGGAGATAGGGCGTTTTCAGAGGGGAAACCAGGA  292
      |||||||||| |||| ||||||||||||||||||||||||||||||||||
seq2  AGCAGGGGGAAAGGGAAGGAGATAGGGCGTTTTCAGAGGGGAAACCAGGA  294

seq1  AAGGGGATAACACTTGAAATGTAAATAAAAACATATCTGACTTAAAAAGA  342
      ||| ||||| |||||||||| |||||||||||||||||||||||||||||
seq2  AAGCGGATAGCACTTGAAATCTAAATAAAAACATATCTGACTTAAAAAGA  344

seq1  AACAATAGAAACATTTCATGCTATCAAGAGGGTTCTTTTTCCCAATCAAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAGAAACATTTCATGCTATCAAGAGGGTTCTTTTTCCCAATCAAG  394

seq1  CTTCTAGGAAGCTAATCTCAATTCTAAATTTTACAAAAGTGCCCAATCTA  442
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTTCTAGGAAGCTAATCTCAATTCTAAATTTTACAAAAGTACCCAATCTA  444

seq1  CATTGTCATCCTATATGAGAGGTGAAGATCTGCTCTAAAATTGAAAATAA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCATCCTATATGAGAGGTGAAGATCTGCTCTAAAATTGAAAATAA  494

seq1  AAGATACTGAGGCAATATCCTGAACACAGAACTGGCAGTGGTAATATCAG  542
      |||||||||||||||||||||||||||| |||| ||||||||||||||||
seq2  AAGATACTGAGGCAATATCCTGAACACAAAACTAGCAGTGGTAATATCAG  544

seq1  AGCCCTGCATACATGCCTGGCAGCCTAGGACAATGAGTATGTGCAGGTCA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGCATACATGCCTGGCAGCCTAGGACAATGAGTATGTGCAGGTCA  594

seq1  GGCACTGTACCTAGACATCTCCTGAGATTTCTCCACTC-ACTGGACTTGA  641
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGCACTGTACCTAGACATCTCCTGAGATTTCTCCACTCAACTGGACTTGA  644

seq1  TCCTGTCCATCTAATGCAGGACATGCACTGAAAGGACAAAAGCCAACTGC  691
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCCTGTCCATCTAATGCAGGAAATGCACTGAAAGGACAAAAGCCAACTGC  694

seq1  AGGAGGTGTGGGGATGCCTCACAGGTTAGATATCTGCTACTCTCTAGAAG  741
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTGTGAGGATGCCTCACAGGTTAGATATCTGCTACTCTCTAGAAG  744

seq1  ACCCACATGGTGCCTAACAATCATCTCCAGGAATGGTTGTGATTCCTTCT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACATGGTGCCTAACAATCATCTCCAGGAATGGTTGTGATTCCTTCT  794

seq1  GTCCTCTGAGAGAAATGTCTCTCGGGAGGAGCCACATACAGTATTACATT  841
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTGAGGGAAATGTCTCTCGGGAGGAGCCACATACAGTATTACATT  844

seq1  CAGTAGGAAAAACACCCATTCATATAAATGTTAAACATAAGTCTAATCAG  891
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CAGTAGGAAAAACACCCATTCACATAAATGTTAAACATAAGTCTAATCAG  894

seq1  CAACAGCAAAACCACAGCAAGCTTATGGTCAAGGACAACAGCATCTATCA  941
      ||||||||||| ||||||||| ||||||||||||||||||||||||||||
seq2  CAACAGCAAAAGCACAGCAAGTTTATGGTCAAGGACAACAGCATCTATCA  944

seq1  AAAGCTATTTCCCAGTAGGACTTGGAAGGTCATTATATCTGCTGTGTGGT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTATTTCCCAGTAGGACTTGGAAGGTCATTATATCTGCTGTGTGGT  994

seq1  TGTCACTGATGCTGTGTTGCAAGCAAAACTGAGGCATATGGCTCTGGCCT  1041
      ||||||||||||||| ||||||| ||||||||||||||||||||||||||
seq2  TGTCACTGATGCTGTATTGCAAGTAAAACTGAGGCATATGGCTCTGGCCT  1044

seq1  TCCTCATTTATTTTATATTCCTTTGTGAATATTTTTATTTCCTGGGCAGC  1091
      ||||||||||||||||| ||||||||||||||||||||||||| ||||||
seq2  TCCTCATTTATTTTATAATCCTTTGTGAATATTTTTATTTCCTTGGCAGC  1094

seq1  TTTAGAGTAATTACAGTATATTACTCAGTATCTGGTCCACAGGATCCTGA  1141
      ||||||||||| || ||||||||||||||||||||||||||||||| |||
seq2  TTTAGAGTAATGACGGTATATTACTCAGTATCTGGTCCACAGGATCATGA  1144

seq1  ATGGATGTGTGTTACAGAGTACTATATGTTAGAAGTAAGAGAATTC  1187
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGTGTGTTACAGAGTACTATATGTTAGAAGTAAGAGAATTC  1190

seq1: chr5_14996189_14997194
seq2: B6Ng01-331J20.g_69_1062

seq1  GAATTTACATCTTATTTCCATAAAACATATATGCTGTAG----CATACAT  46
      ||||| |||||||||||||||||||||||||||||||||    |||||||
seq2  GAATTCACATCTTATTTCCATAAAACATATATGCTGTAGCATACATACAT  50

seq1  ACATACACACATACACACATACACACATACACACATACACACATACACAC  96
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATACATACACACATACACACATACACACATACACACATACACAC  100

seq1  ATACACACATACACACATACACACACACACACACACACACACATACACAC  146
      ||||||||||||||||||||||||| ||||||| ||||||    | ||||
seq2  ATACACACATACACACATACACACATACACACATACACAC----ATACAC  146

seq1  ACATACACACATACACACATACACACAAACAATTGGTTTGTCTGTTTAGT  196
      |||||||||||||||||||||| |||| ||||||||||    ||||||||
seq2  ACATACACACATACACACATACTCACATACAATTGGTT----TGTTTAGT  192

seq1  TTTGGATGGGTTTGAGGTATGGTTGTTGTTGGTTTGTTTTTGAAAC--AG  244
      |||||||||||||||||| |||||||||||||||||||||||||||  ||
seq2  TTTGGATGGGTTTGAGGTGTGGTTGTTGTTGGTTTGTTTTTGAAACAGAG  242

seq1  TCTGTCTATGTAGCCTTGGCTGTCATGGAATTTGCTTTGTAAACCAGGCT  294
      ||||||||||||||| ||||||||||||||||||||||||| | ||||||
seq2  TCTGTCTATGTAGCCCTGGCTGTCATGGAATTTGCTTTGTAGATCAGGCT  292

seq1  GGCCTCAAATTCAGAGATTCACTTTCTTCTGTCTTCTGAGACCTAGTAGT  344
      |||||||||||||||||||||| |||||||||||||||||| ||||||||
seq2  GGCCTCAAATTCAGAGATTCACCTTCTTCTGTCTTCTGAGAACTAGTAGT  342

seq1  CAAGTCTCCTCGCCCAGCAGTTTGAATTGTTGGATTAAAGATTTTGGACA  394
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTCCACGCCCAGCAGTTTGAATTGTTGGATTAAAGATTTTGGACA  392

seq1  TTTTTCTACTTTATCTTTTCTATTAAGATAGAAAGAAGATAGCCTATTAT  444
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTACTTTATCTTTTCTATTAAGATAGAAAGAAGATAGCCTATTAT  442

seq1  TCAAATTTACTCAGAAAATTATTTTATAGTCAGTCATGGCTGGAATGCAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTTACTCAGAAAATTATTTTATAGTCAGTCATGGCTGGAATGCAG  492

seq1  ATATAAAAAAA-TCAGATTGTTTGGAACTGAAAA-AAAAAGA-TAAAAAG  541
      ||||||||||| ||| |||||||| |||||||||  |||||| |||||||
seq2  ATATAAAAAAATTCAAATTGTTTGAAACTGAAAATTAAAAGATTAAAAAG  542

seq1  TTTAAGAAACTCTTTAAAAATTTCCCTTTTC-AAAACTGGCTGGCCATTC  590
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTTAAGAAACTCTTTAAAAATTTCCCTTTTCAAAAACTGGCTGGCCATTC  592

seq1  ATACAGCTCATGAATCTTAAGGTTTAACAATATAAGTGAGTAGCCTCAGC  640
      ||| ||||||||||||||||||||||||| ||||| ||| ||||||||||
seq2  ATATAGCTCATGAATCTTAAGGTTTAACAGTATAAATGAATAGCCTCAGC  642

seq1  TTATTTCAGTTTGTCTTAAATTTAATTTAGGTTTAATCATGTGTCTATAG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCAGTTTGTCTTAAATTTAATTTAGGTTTAATCATGTGTCTATAG  692

seq1  ACCTGTACTTTTATCATCGTGTTATTTTTCCTTATAACTTAACTGTTAAC  740
      |||||||||||||||||||||||| ||||||||||| |||||||||||||
seq2  ACCTGTACTTTTATCATCGTGTTA-TTTTCCTTATAGCTTAACTGTTAAC  741

seq1  ATTAATAGACCTCAAAAAAATAAATACATTTAAATCCGATGAGCACAAGA  790
      |||||||||||||||||||   ||||||||||||||||||||||||||||
seq2  ATTAATAGACCTCAAAAAA--TAATACATTTAAATCCGATGAGCACAAGA  789

seq1  TGTTCAGAATTGTTAGCAAACGTCTTGCTTTTGTTACTGTAGCTTCTAGG  840
      || |||| |||||||||||||||||||| ||||| |||||||||||||||
seq2  TGCTCAGTATTGTTAGCAAACGTCTTGC-TTTGTCACTGTAGCTTCTAGG  838

seq1  CCCCAAGTACAGC-CATTCTGGGGATTTCTGTTAGCGCCGAAGTGACTTA  889
      ||||||||||||| ||||||| |||||||||||| |||||||  ||||||
seq2  CCCCAAGTACAGCTCATTCTGAGGATTTCTGTTA-CGCCGAATGGACTTA  887

seq1  GGAATTGCCTTGCTCATCTGGTGTCTTACATGTCTCAGAGAATCCAAGTG  939
      ||||||| | ||||||||||| ||| |||| ||| |||||||||| ||||
seq2  GGAATTGTC-TGCTCATCTGG-GTC-TACACGTCACAGAGAATCC-AGTG  933

seq1  ACGTGATAAAGGAAAGGAAAGGAAACAGAATGGGATCAGTTTCTGGATGA  989
      || ||| |||||||||  || ||||||| |||| |||| | ||| |||||
seq2  AC-TGA-AAAGGAAAG--AAAGAAACAG-ATGGTATCA-TGTCTTGATGA  977

seq1  GAGTGAGCCACTAGAGC  1006
      | |||||||||||||||
seq2  GCGTGAGCCACTAGAGC  994