BAC Information

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BAC

Clone NameB6Ng01-333F06
Chromosome6 (Build37)5 (Build37)
Map Location 74,199,855 - 74,201,02377,979,507 - 77,979,728
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSuclg1, Olfr210-ps1, 4931417E11Rik, LOC100043338
Downstream geneEG668132, LOC668136
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333F06.bB6Ng01-333F06.g
ACCGA119170GA119171
length1,1671,038
definitionB6Ng01-333F06.b B6Ng01-333F06.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(74,199,855 - 74,201,023)(77,979,507 - 77,979,728)
sequence
gaattctctaagaatttgtgtgtttatttgaatgacaaatgtcctctata
ggattcattctatgaagtcataggcctcttgaactttgttcatgcctgat
ggataaaataacaaagaaacaaacaaaatggtcttgtatctttgatgtta
tgattaacaggatctcctgatatcaattcatgttttattattagtaagta
tactttctgtcattgcatctaaaaggactctaccatagcagtttgacagt
ttaaaaatactcctgaggacaacatatgagcagaatcttggaaggtgaga
tgatttttaattctccctttgctgtttcaattataagcttagagtcagtt
taaatccctttgacagaaatccacatcgaatggctcagcaaatataacca
ccatgcattatttagcaagaattttgctctaatttctatagtcagcgtat
tcttacattcatcatagtccttattgctgagtgttctgtgtaatggtcct
gctttaggtattagtcttcctcagatttcacaccgtaaaccatttgccca
actgtggtttaagtgtgaaatgtaccaccggaactcaagtgctcaaacat
tttgtaccaagtggtggtggtgttttacaaggttctgaaacctttacgat
gcagaggaaataggccttttgtgtgagcttaaagttttctaatatagttc
ccttcctatcggttcttgcttccccttccaccgagccttgagaaggtgag
gcctgagaatagtacactcttgacactgtggagatgtttgttgtcatgcc
ttccccacacagggacagactgtggcctctgaaactaagtaaaaaggcac
acttcctttcttcaagtgcttcttggcagatacttgatcacagtgagcca
acaagaagtaccaggtctggcaagaaaggcttagaaggtaaaactgctta
atccagattccacatggtggaaagggtgtactgagtttttcttctaagca
ctacatatgtgcctttgcctgtacatgtatgtgtggacttgtgcacagca
tactcctcccactaaataaagaacccactatcaacagaagaagcacttaa
gaacaccttctattatactatttctgtagatcgtggtgacaaagaatggg
tgatcatgagttttctg

gaattcctgtaatgatttgcctgtttcaaagaagacgtttcttgatgagg
ggtgataaaaaaaaggtatcttgtaggtatcttgtgatatctgtaggtat
ttggacaaatatttcaaatttagtaaggagttatgatagtttagtaagat
ggtaattgcagattcttctacaaaatctatgaattcaccagcactaagca
gttggctaggtttccagttccagacatgaactgcctattgttggatcgtt
cttaagtaaattgagactgtccagtctcagtgtacacatctccttcaacc
actcctaagggatcattgcagcaatgagtgtagaaagcttgtaaaagtta
tttggaataggaattttactgtgagattgtatgtctaagtaacatcagac
actacactcctaatgtctcatcagcataagttttgaaatatgagctgaac
aagaacaagttatatttaaaagtggactaggaaaggacatgagatgttat
tcttacacaaagaaacaagggaatgctgaaagcagaaaaaaaaagttttc
ccaactgtaaaacacaccaattgctattcccataacaaatgcttagccct
gaaaacatgaaaacagatatatgcttttgtatgtaacaacaattcatatt
aaagaacctatcatttttatctttggaagtacaaatagtttattttattg
actaattgattttatgaaaaataaaattttctcacataatatatcctgac
tatagtttccacattttctattcttccaaattcttccccagttcctttgc
tatttattttttaatattttttattattacgcattttcctcaattacatt
tagaatgctatcccaaaagtcccccatacccttccccccacttccctacc
cacccatttcccatttttttgggccctggcattcccctgtactgaggcat
ataaagtttgcgtgtccaatgggcctctctttccagtgatggccgactag
gccatcttttgatacatatgcagctagagtcagagctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_74199855_74201023
seq2: B6Ng01-333F06.b_48_1214

seq1  GAATTCTCTAAGAATTTGTGTGTTTATTTGAATGACAAATGTCCTCTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAAGAATTTGTGTGTTTATTTGAATGACAAATGTCCTCTATA  50

seq1  GGATTCATTCTATGAAGTCATAGGCCTCTTGAACTTTGTTCATGCCTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCATTCTATGAAGTCATAGGCCTCTTGAACTTTGTTCATGCCTGAT  100

seq1  GGATAAAATAACAAAGAAACAAACAAAATGGTCTTGTATCTTTGATGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAAATAACAAAGAAACAAACAAAATGGTCTTGTATCTTTGATGTTA  150

seq1  TGATTAACAGGATCTCCTGATATCAATTCATGTTTTATTATTAGTAAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAACAGGATCTCCTGATATCAATTCATGTTTTATTATTAGTAAGTA  200

seq1  TACTTTCTGTCATTGCATCTAAAAGGACTCTACCATAGCAGTTTGACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCTGTCATTGCATCTAAAAGGACTCTACCATAGCAGTTTGACAGT  250

seq1  TTAAAAATACTCCTGAGGACAACATATGAGCAGAATCTTGGAAGGTGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATACTCCTGAGGACAACATATGAGCAGAATCTTGGAAGGTGAGA  300

seq1  TGATTTTTAATTCTCCCTTTGCTGTTTCAATTATAAGCTTAGAGTCAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTAATTCTCCCTTTGCTGTTTCAATTATAAGCTTAGAGTCAGTT  350

seq1  TAAATCCCTTTGACAGAAATCCACATCGAATGGCTCAGCAAATATAACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCCCTTTGACAGAAATCCACATCGAATGGCTCAGCAAATATAACCA  400

seq1  CCATGCATTATTTAGCAAGAATTTTGCTCTAATTTCTATAGTCAGCGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCATTATTTAGCAAGAATTTTGCTCTAATTTCTATAGTCAGCGTAT  450

seq1  TCTTACATTCATCATAGTCCTTATTGCTGAGTGTTCTGTGTAATGGTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACATTCATCATAGTCCTTATTGCTGAGTGTTCTGTGTAATGGTCCT  500

seq1  GCTTTAGGTATTAGTCTTCCTCAGATTTCACACCGTAAACCATTTGCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAGGTATTAGTCTTCCTCAGATTTCACACCGTAAACCATTTGCCCA  550

seq1  ACTGTGGTTTAAGTGTGAAATGTACCACCGGAACTCAAGTGCTCAAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGTTTAAGTGTGAAATGTACCACCGGAACTCAAGTGCTCAAACAT  600

seq1  TTTGTACCAAGTGGTGGTGGTGTTTTACAAGGTTCTGAAACCTTTACGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACCAAGTGGTGGTGGTGTTTTACAAGGTTCTGAAACCTTTACGAT  650

seq1  GCAGAGGAAATAGGCCTTTTGTGTGAGCTTAAAGTTTTCTAATATAGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGAAATAGGCCTTTTGTGTGAGCTTAAAGTTTTCTAATATAGTTC  700

seq1  CCTTCCTATCGGTTCTTGCTTCCCCTTCCACCGAGCCTTGAGAAGGTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTATCGGTTCTTGCTTCCCCTTCCACCGAGCCTTGAGAAGGTGAG  750

seq1  GCCTGAGAATAGTACACTCTTGACACTGTGGAGATGTTTGTTGTCATGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAGAATAGTACACTCTTGACACTGTGGAGATGTTTGTTGTCATGCC  800

seq1  TTCCCCACACAGGGACAGACTGTGGCCTCTGAAACTAAGTAAAAAGGCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCACACAGGGACAGACTGTGGCCTCTGAAACTAAGTAAAAAGGCAC  850

seq1  ACTTCCTTTCTTCAAGTGCTTCTTGGCAGATACTTGATCACAGTGAGCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTTTCTTCAAGTGCTTCTTGGCAGATACTTGATCACAGTGAGCCA  900

seq1  ACAAGAAGTACCAGGTCTGGCAAG-AAGGCTTAGAAGGTAAAACTGCTTA  949
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACAAGAAGTACCAGGTCTGGCAAGAAAGGCTTAGAAGGTAAAACTGCTTA  950

seq1  ATCCAGATTCCACATGGTGGAAAGGGTGTACTGAGTTTTTCTTCTAAGCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGATTCCACATGGTGGAAAGGGTGTACTGAGTTTTTCTTCTAAGCA  1000

seq1  CTACATATGTGCCTTTGCCTGTACATGTATGTGTGGACTTGTGCACAAGC  1049
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTACATATGTGCCTTTGCCTGTACATGTATGTGTGGACTTGTGCAC-AGC  1049

seq1  ATACCTCCTCCCACTAAATAAAGAAACCCACTATCAACAG-AGAAGCACC  1098
      ||| ||||||||||||||||||| |||||||||||||||| |||||||| 
seq2  ATA-CTCCTCCCACTAAATAAAG-AACCCACTATCAACAGAAGAAGCACT  1097

seq1  TAAG-ACA-CTTCTA-TATACCTATTCCTGTAGGATCGTGGTGACAAAGA  1145
      |||| ||| |||||| |||| ||||| ||||| |||||||||||||||||
seq2  TAAGAACACCTTCTATTATA-CTATTTCTGTA-GATCGTGGTGACAAAGA  1145

seq1  ATGGGTGATCAATGGAGTTTTCTG  1169
      |||||||||||   ||||||||||
seq2  ATGGGTGATCA--TGAGTTTTCTG  1167


seq1: chr5_77979507_77979728
seq2: B6Ng01-333F06.g_883_1104 (reverse)

seq1  GAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCA  50
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTC-TGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCA  49

seq1  TCACTGGAAAGAGAGGCCCACTGGACAGGCAAACTTTATATGCCCCAGTA  100
      |||||||||||||||||||| |||||| |||||||||||||||| |||||
seq2  TCACTGGAAAGAGAGGCCCATTGGACACGCAAACTTTATATGCCTCAGTA  99

seq1  CAGGGGAATGCCAGGGCC--AAAAAATGGG-AATGGGTGGGTAGGGGAGT  147
      ||||||||||||||||||  |||||||||| ||||||||||||||| |  
seq2  CAGGGGAATGCCAGGGCCCAAAAAAATGGGAAATGGGTGGGTAGGGAA--  147

seq1  GTGGGGGGGAGGGTGTGGGAGACTTTTGGGATAGCATTGGAAATGTAATT  197
      |||||||| ||||| |||| ||||||||||||||||||  ||||||||||
seq2  GTGGGGGGAAGGGTATGGGGGACTTTTGGGATAGCATTCTAAATGTAATT  197

seq1  GAGGAAAATACGTAATAAAAAAAAA  222
      ||||||||| |||||||| ||||||
seq2  GAGGAAAATGCGTAATAATAAAAAA  222


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